BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G30010.1
Length=671
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491755 jgi|Araly1|491755|fgenesh2_kg.7__1188__AT4G30010.1 1064 0.0
> Ahg491755 jgi|Araly1|491755|fgenesh2_kg.7__1188__AT4G30010.1
Length=674
Score = 1064 bits (576), Expect = 0.0
Identities = 647/679 (95%), Gaps = 13/679 (2%)
Strand=Plus/Plus
Query 1 ATCTTCGGAAAGTCTCATTTCTCGATCCCCAATTCGTGGATTAGGGTTAAAA-GAACCAT 59
||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1 ATCTTCGAAAAGTCTCATTTCTCGATCCCCAATTCGTGGATTAGGGTTAAAAGGAACCAT 60
Query 60 TTTTATTCTCGTCG-C-GCAACAACAAATC-CAGATCGAAAAAGGAAGAAGAGATCGAAA 116
|||||||||||||| | ||||||||||| ||||||||| |||||||||||||||||||
Sbjct 61 TTTTATTCTCGTCGCCAAAAACAACAAATCTCAGATCGAAGAAGGAAGAAGAGATCGAAA 120
Query 117 TGGCGTTGAGAAGGGTTTACAGTGAAATCAGAGGGAAGAAGGTGACGGAGCTTCCAGGCT 176
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 121 TGGCGTTGAGAAGGGTTTACAGTGAAATCAAAGGGAAGAAGGTGACGGAGCTTCCAGGCT 180
Query 177 ATATCAAATCGACTTTTTCAATGGAGACCGTGAAGACCTCTGTGAAGAGAGGACTCGATA 236
|| | |||||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 181 ATTTGAAATCGACGTTTTCAATGGAGACCGTGAAGACATCTGTGAAGAGAGGACTCGATA 240
Query 237 ACTACAACGAAAAATACATTCAGACCAGCTCCGTTGATCCTATCCTTCATATCTGCTTCT 296
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 241 ACTACAACGAAAAATACATTCAGACCAGCTCCGTTGACCCTATCCTTCATATCTGCTTCT 300
Query 297 ACGGCATGGCTTTCTCTTACCTTGTCGCTCTCCCTAATGAGCGTCGCCATCTTGAGCATC 356
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 301 ACGGCATGGCTTTCTCTTACCTTGTCGCTCTCCCTAATGAGCGTCGTCATCTTGAGCATC 360
Query 357 AGCAGCATGCTAAGGAGCACGGTGGTCATTGATCTCGTGGGAATCGTTTCGATCTCGAGA 416
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 361 AGCAGCATGCTAAGGAGCACGGTGGTCATTGATCTCGTCGGAATCGTTTCGATCTCGAGA 420
Query 417 TGATTTTAGGGGGGTTGCTGTGAAATCTTTCTCTGCTTGATGGTGACGACGACTCAAGAA 476
|||||||||||||||||||||||||||||||| ||||||||||||||| | |||||||
Sbjct 421 TGATTTTAGGGGGGTTGCTGTGAAATCTTTCT--GCTTGATGGTGACGA--A-TCAAGAA 475
Query 477 TTGTGTCTTATTGTTTCGTTTTCTTGAATTTTCCTGGATAATGTTGACCTAAAGGAAAAC 536
|||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 476 TTGTGTCTTATTGTTTTGTTTTCTTGAATTTTCCTGGATATTGTTGACCTAAAGGAAAAC 535
Query 537 CTTTCTTTCGAATTACACTCCATGATAGTCAATAATTGAAGCATCATGATGATATCCATG 596
|||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 536 CTTTCTTTTGAATTGCACTCCATGATAGTCAATAATTGAAGCATCATGATGATATCCATG 595
Query 597 AATAATGAAAC-t-tttttttt--GTTCCGTGAAGTTGTGAATTCAGCAATTGTTTTATC 652
||||||||||| | |||||||| ||||| |||||||||||||||| || ||||||||||
Sbjct 596 AATAATGAAACCTGTTTTTTTTTTGTTCCATGAAGTTGTGAATTCACCATTTGTTTTATC 655
Query 653 ATATTTGATCGATTCAATG 671
|||||||||||||||||||
Sbjct 656 ATATTTGATCGATTCAATG 674
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24627404382
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5