BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G30020.1
Length=2960
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491754 jgi|Araly1|491754|fgenesh2_kg.7__1187__AT4G30020.1 4518 0.0
Ahg480817 jgi|Araly1|480817|fgenesh2_kg.3__3518__AT2G19170.1 2410 0.0
> Ahg491754 jgi|Araly1|491754|fgenesh2_kg.7__1187__AT4G30020.1
Length=2918
Score = 4518 bits (2446), Expect = 0.0
Identities = 2753/2900 (95%), Gaps = 25/2900 (1%)
Strand=Plus/Plus
Query 2 CTCTCTCTCCGTCTCTCACTAAAAGCTTCTCACTTACATTTCTGCTTTCATTCATTAATC 61
|||||||||||||||| ||||||| ||| |||||||||||||| ||||| |||||| |||
Sbjct 1 CTCTCTCTCCGTCTCTAACTAAAAACTTGTCACTTACATTTCTTCTTTCTTTCATTTATC 60
Query 62 TCTGTGTTTCCTTCTTTTGATCTTTTTGGCAAGATCTCTATTTTTCTTCCaaaaaaggaa 121
||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 61 TCTGTTTTTCCTTCTTTTGATCTTTTTTGCAAGATCTCTATTTTTCTTCCAAAAAAGGAA 120
Query 122 aaataaaaaGATCATAACTTCAGAATCAAAGTTTCTCTTTGTTCACA-TTGTTCTATCCA 180
||| ||||| | | | |||| ||||||||||||| |||| | |||||||||| |
Sbjct 121 AAA-AAAAA-A--A-GA----AGAAGCAAAGTTTCTCTTCGTTCGGATTTGTTCTATCTA 171
Query 181 TCTGCACATTTGATTCATGTAGTGACTAATCTCACAGTCTCGTTCTCAAA-----TTTAC 235
||||||||||||||| |||||||||||||||||||||||||||||||||| |||||
Sbjct 172 TCTGCACATTTGATTTATGTAGTGACTAATCTCACAGTCTCGTTCTCAAATTTGCTTTAC 231
Query 236 TTTATCT-GCTTGATTCGTTTCGTGAATCCAAATTTAGTCTGAAGAGAATTAAGCTTGGC 294
||||||| || ||||||||||||||||||||| |||||||| ||| |||| ||||||||
Sbjct 232 TTTATCTGGC-TGATTCGTTTCGTGAATCCAAGTTTAGTCTTAAGCGAATAAAGCTTGGT 290
Query 295 GCTTCTTTGGTGAGAAGCAAGATGGATATCGGGTGTAAAGTTCTCGTCTTTTTCACATGT 354
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 291 GCTTCTTTGGTGAGAAGCAAGATGGATATCGGGTGTAAAGTTATCGTCTTTTTCACATGT 350
Query 355 TTCCTCACTGTGACAGCAGAGATTTACATTGTGACTATGGAAGGAGAACCAATCATTAGT 414
||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 351 TTCTTCTCTGTGACAGCAGAGATTTACATTGTGACTATGGAAGGAGAACCAATCATTAGT 410
Query 415 TACAAAGGTGGTGATAATGGATTTGAAGCAACTGCTGTGGAATCTGATGAGAAAATTGAT 474
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 411 TACAAAGGTGGTGATAATGGATTTGAAGCAACTGCTGTGGAATCTGATGAGAAAATTGAT 470
Query 475 ACTACAAGTGAACTGGTGACATCATACGCCCGTCACCTTGAGAGGAAGCATGATATGCTT 534
|| || |||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 471 ACGACTAGTGAACTGGTGACATCATATGCCCGTCACCTTGAGAGGAAGCATGATATGCTT 530
Query 535 CTTGGAATGCTCTTTGTGGAAGGATCTTACAAAAAGCTTTACAGCTATAAACACCTCATT 594
|||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||
Sbjct 531 CTTGGAATGCTCTTTGAGGAAGGATCTTACAAAAAGCTTTATAGCTATAAACACCTCATT 590
Query 595 AATGGTTTTGCAGCTCATGTATCCCCTGATCAGGCGGAAATGCTTCGTCGCGCGCCTGGT 654
|||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 591 AATGGTTTTGCAGCTCATGTTTCCCCTGATCAGGCGGAAATGCTTCGTCGTGCGCCTGGT 650
Query 655 GTGAAATCTGTGGA-TAGAGATTGGAAAGTTAGGAAACTTACTACACATACACCACAGTT 713
||||||||||| || ||||||||||||||| |||||||| || |||||||||||||||||
Sbjct 651 GTGAAATCTGT-GAGTAGAGATTGGAAAGTGAGGAAACTCACCACACATACACCACAGTT 709
Query 714 TTTGGGATTACCAACTGATGTTTGGCCAACTGGTGGTGGTTATGATAGAGCAGGGGAAGA 773
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 710 TTTGGGATTACCAACTGATGTTTGGCCAACTGGTGGTGGTTATGATAGAGCAGGAGAAGA 769
Query 774 TATTGTTATTGGCTTTATTGACTCAGGGATATTTCCACATCACCCAAGTTTTGCCTCTCA 833
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 770 TATTGTTATTGGCTTTATTGACTCAGGGATATTTCCACATCACCCAAGTTTTGCCTCTCA 829
Query 834 CCACACAACAGTACCTTATGGCCCTCATCCTAGTTACAAAGGGAAATGTGAAGAAGATCC 893
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 830 CCACACAACAGTACCTTATGGCCCTCATCCTAGTTACAAAGGGAAATGTGAAGAAGATCC 889
Query 894 TCATACTAAGATCAGTTTCTGCAATGGGAAGATCATAGGAGCGCAGCATTTTGCTGAAGC 953
|||| ||||| ||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 890 TCATTCTAAGCTCAGTTTCTGCAACGGGAAGATCATAGGAGCCCAGCATTTTGCTGAAGC 949
Query 954 CGCTAAAGCAGCTGGTGC-TTTCAATCCGGATATCGACTTTGCTTCACCAATGGATGGCG 1012
||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||
Sbjct 950 TGCTAAAGCAGCTGGTGCATTT-AATCCGGATATCGACTTTGCTTCACCAATGGATGGCG 1008
Query 1013 ATGGACATGGAAGTCACACAGCAGCTATTGCAGCTGGGAACAATGGTATTCCAGTGAGGA 1072
|||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1009 ATGGACATGGAAGTCATACAGCAGCTATTGCAGCTGGGAATAATGGTATTCCAGTGAGGA 1068
Query 1073 TGCACGGTTATGAGTTTGGAAAAGCAAGCGGGATGGCTCCTCGTGCAAGGATTGCTGTTT 1132
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1069 TGCACGGCTATGAGTTTGGAAAAGCAAGCGGGATGGCTCCTCGTGCAAGGATTGCTGTTT 1128
Query 1133 ACAAAGCTCTCTACCGACTTTTTGGAGGCTTTGTAGCTGATGTGGTGGCTGCCATTGATC 1192
|||||||||||||||| || |||||||||||||||||||||||||| |||||||||||||
Sbjct 1129 ACAAAGCTCTCTACCGGCTCTTTGGAGGCTTTGTAGCTGATGTGGTTGCTGCCATTGATC 1188
Query 1193 AGGCTGTTCATGATGGAGTAGATATTTTGAGTCTCTCGGTTGGTCCAAACAGTCCTCCAG 1252
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1189 AGGCTGTTCATGATGGAGTAGATATTTTGAGTCTCTCGGTTGGTCCAAACAGTCCTCCAG 1248
Query 1253 CTACTACAAAGACAACATTCTTGAATCCATTTGATGCTACACTTCTTGGGGCTGTAAAAG 1312
||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1249 CTACTACCAAGACAACATTCTTAAATCCATTTGATGCTACACTTCTTGGGGCTGTAAAAG 1308
Query 1313 CTGGTGTTTTTGTTGCTCAAGCTGCTGGAAACGGAGGTCCCTTTCCGAAAACTCTGGTTT 1372
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1309 CTGGTGTTTTTGTTGCTCAAGCTGCTGGAAACGGAGGTCCCTTTCCGAAAACTTTGGTTT 1368
Query 1373 CATACAGCCCTTGGATAACTACTGTGGCTGCTGCAATTGATGATCGCAGATACAAAAATC 1432
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1369 CGTACAGCCCTTGGATAACTACTGTGGCTGCTGCAATTGATGATCGCAGATACAAAAATC 1428
Query 1433 ATCTGACTCTTGGAAATGGTAAAATGCTTGCCGGAATAGGATTATCTCCTTCTACTCGAC 1492
||||||| ||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct 1429 ATCTGACACTTGGAAATGGTAAAATGCTTGCAGGAATAGGATTATCCCCTTCTACTCGAC 1488
Query 1493 CTCATCGTTCATACAAGATGGTTTCTGCAAATGATGTTCTGCTTGGTTCTTCTGGTATGA 1552
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1489 CTCATCGTTCATACAAGATGGTCTCTGCAAATGATGTTCTGCTTGGTTCTTCTGGTATGA 1548
Query 1553 AATACAATCCGTCGGACTGCCAGAAGCCAGAAGTCTTGAACAAAAAATTAGTCGAAGGAA 1612
|||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1549 AATACAATCCGTCGGATTGCCAGAAGCCAGAAGTCTTGAACAAAAGATTAGTCGAAGGAA 1608
Query 1613 ACATTCTGCTTTGTGGATATTCTTTCAA-TTTCGTTGCTGGTTCAGCTTCCATCAAGAAA 1671
|||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||
Sbjct 1609 ACATTCTGCTTTGTGGATATTCTTTCAACTTT-GTTGCTGGTTCAGCTTCCATCAAGAAA 1667
Query 1672 GTTGCTGAAACTGCCAAGCATCTAGGCGCTGCTGGTTTCGTTCTTGTTGTCGAAAACGTT 1731
||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| |||
Sbjct 1668 GTTGCTGAAACTGCCAAGCATCTAGGCGCCGCTGGTTTTGTTCTTGTTGTCGAAAATGTT 1727
Query 1732 TCTCCAGGAACAAAATTCGATCCCGTTCCTTCTTGCATTCCTGGGATTCTGATTACAGAT 1791
||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1728 TCTCCTGGAACAAAATTCGATCCTGTTCCTTCTTGCATTCCTGGGATTCTGATTACAGAT 1787
Query 1792 GTCTCTAAGTCAATGGATTTGATTGATTACTACAATGTCACAACGTCAAGAGATTGGATG 1851
|||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 1788 GTCTCTAAGTCAATGGATTTGATTGATTACTACAATGTTACGACGTCAAGAGATTGGATG 1847
Query 1852 GGAAGGGTAAAGGACTTTAAAGCTGAAGGAAGCATCGGAGACGGTTTGGAACCCATTCTT 1911
||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1848 GGAAGAGTAAAGGACTTTAAAGCTGAAGGAAGCATCGGAGATGGTTTGGAACCCATTCTT 1907
Query 1912 CACAAATCCGCACCTGAAGTTGCTCTGTTCTCAGCTCGAGGACCCAATACCAAAGATTTC 1971
|||||||||||||||||||| |||||||| ||||||||||||||||| || |||||||||
Sbjct 1908 CACAAATCCGCACCTGAAGTGGCTCTGTTTTCAGCTCGAGGACCCAACACTAAAGATTTC 1967
Query 1972 AGCTTTCAGGATGCTGATCTTCTCAAACCAGATATTCTTGCTCCAGGCTCTTTAATATGG 2031
|||||||||||||||||||| ||||||||||||||||||||||| |||||| | || |||
Sbjct 1968 AGCTTTCAGGATGCTGATCTCCTCAAACCAGATATTCTTGCTCCCGGCTCTCTGATTTGG 2027
Query 2032 TCTGCCTGGTCTGCAAATGGAACAGACGAGGCTAACTATATCGGCGAAGGATTTGCACTA 2091
||||| ||||||| ||||||||| ||||||||||||||| | ||||||||||||||| ||
Sbjct 2028 TCTGCATGGTCTGAAAATGGAACTGACGAGGCTAACTATGTTGGCGAAGGATTTGCATTA 2087
Query 2092 ATTTCTGGCACAAGCATGGCTGCACCACACATTGCGGGTATTGCTGCTCTGGTGAAACAG 2151
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 2088 ATTTCTGGCACAAGCATGGCTGCACCACACATTGCGGGTATAGCTGCTCTGGTGAAACAG 2147
Query 2152 AAGCATCCTCAATGGAGTCCAGCTGCCATTAAATCAGCTTTGATGACGACTTCAACAGTC 2211
|||||||||||||||||||||||||| || || ||||||||||||||||||||| |||||
Sbjct 2148 AAGCATCCTCAATGGAGTCCAGCTGCTATCAAGTCAGCTTTGATGACGACTTCAGCAGTC 2207
Query 2212 ATAGATAGAGCAGGAAGACCTCTCCAAGCACAACAATATTCTGAAACAGAGACAGTAACA 2271
|||||| |||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 2208 ATAGATCGAGCAGGAAGGCCTCTCCAAGCACAGCAATATTCTGAAACAGAGACAGTAACA 2267
Query 2272 CTTGTTAAAGCAACTCCGTTTGATTATGGAAGCGGTCATGTCAATCCAAGCGCTGCTCTA 2331
||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 2268 CTTGTTAAAGCAACTCCTTTTGATTATGGAAGTGGTCATGTCAATCCAAGCGCTGCTCTA 2327
Query 2332 GACCCTGGTCTCATCTTTGATGCAGGTTATGAGGATTATATAGGGTTCTTGTGCACCACA 2391
|||||||| |||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 2328 GACCCTGGCCTCATCTTTGATGCAGGTTATGAGGACTATATAGGGTTCTTGTGTACCACG 2387
Query 2392 CCTGGTATCGATGCTCACGAGATAAAAAACTTCACAAACACTCCATGCAATTTCAAAATG 2451
|| ||||| |||||||| ||||||| |||||||||||||||||||||||||||||||||
Sbjct 2388 CCGGGTATTGATGCTCATGAGATAACAAACTTCACAAACACTCCATGCAATTTCAAAATA 2447
Query 2452 GTTCATCCTTCAAACTTCAACACGCCATCCATAGCCATCTCTCATCTCGTCAGAACACAA 2511
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 2448 GTTCATCCTTCAAACTTCAACACGCCATCCATAGCCATCTCTCATCTCGTGAGAACACAA 2507
Query 2512 ACCGTAACCAGAAGAGTGACGAATGTTGCGGAAGAAGAAGAAACATACACAATCACATCG 2571
||||| || |||||||||||||||||||| ||||| ||||||||||||||||| ||||||
Sbjct 2508 ACCGTGACGAGAAGAGTGACGAATGTTGCAGAAGAGGAAGAAACATACACAATTACATCG 2567
Query 2572 AGGATGGAGCCAGCAATCGCCATCGAAGTGAGTCCTCCTGCAATGACAGTAAGAGCGGGC 2631
|||||||||||||| || |||||||||||||||||||||||||||||||| ||||| |||
Sbjct 2568 AGGATGGAGCCAGCCATTGCCATCGAAGTGAGTCCTCCTGCAATGACAGTTAGAGCAGGC 2627
Query 2632 GCTTCTAGAACCTTTTCGGTGACTCTAACAGTGAGATCAGTGACTGGAGCTTATAGCTTC 2691
|| ||||||||||| || || ||||||||||||||||||||||| |||||||||||||||
Sbjct 2628 GCCTCTAGAACCTTCTCCGTAACTCTAACAGTGAGATCAGTGACCGGAGCTTATAGCTTC 2687
Query 2692 GGACAGGTTACATTGAAAGGAAGCCGAGGGCATAAAGTGACTCTCCCTGTGGTTGCTATG 2751
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2688 GGAGAGGTTACATTGAAAGGAAGCCGAGGGCATAAAGTGACTCTCCCTGTGGTTGCTATG 2747
Query 2752 GGACAAAGGCGATAAAGAAA-ACATATGAGATTTTGTAACATTATTATTGTTATTATTTT 2810
||||||||||||| |||||| | |||||||||||||||||||||||||||||| ||||||
Sbjct 2748 GGACAAAGGCGATGAAGAAACAAATATGAGATTTTGTAACATTATTATTGTTACTATTTT 2807
Query 2811 TGTAATATGCAGTAATAATAAGAAGGTAGTTCTGTGTCTTGAGTAAGAAAAGAATAATAC 2870
||||||||||||||||||||||||||||||| |||| | ||||| ||||||||||| ||
Sbjct 2808 TGTAATATGCAGTAATAATAAGAAGGTAGTTATGTGCCCTGAGTT-GAAAAGAATAACAC 2866
Query 2871 AGTTTGTATAATTAGTTTAT 2890
||||||||||||||||||||
Sbjct 2867 AGTTTGTATAATTAGTTTAT 2886
Score = 54.7 bits (29), Expect = 4e-06
Identities = 31/32 (97%), Gaps = 0/32 (0%)
Strand=Plus/Plus
Query 2922 GATAATAGTAATATGATTAAATGATATACATA 2953
||| ||||||||||||||||||||||||||||
Sbjct 2887 GATTATAGTAATATGATTAAATGATATACATA 2918
> Ahg480817 jgi|Araly1|480817|fgenesh2_kg.3__3518__AT2G19170.1
Length=2878
Score = 2410 bits (1305), Expect = 0.0
Identities = 2177/2593 (84%), Gaps = 80/2593 (3%)
Strand=Plus/Plus
Query 282 AATTAAGCTTGGCGCTTC-TTTGGTGAGAAGCAAGATGGATATCGGG-TGTA-AAGTTCT 338
||| ||| |||| ||||| ||| ||| ||| ||| |||||||||||| || | || || |
Sbjct 245 AATAAAG-TTGGAGCTTCATTT-GTGTGAACCAATATGGATATCGGGTTG-AGAA-TTTT 300
Query 339 CGTCTTTTTCACATG-TT-TCCTCACTGTGACAGCAGAGATTTACATTGTGACTATGGAA 396
||| |||| |||| || | | ||||||||||||||| ||||||||||||||||||||
Sbjct 301 TGTC-GTTTC-CATGCTTCTTGTTACTGTGACAGCAGAGGTTTACATTGTGACTATGGAA 358
Query 397 GGAGAACCAATCATTAGTTACAAAGGTGGTGATAATGGATTTGAAGCAACTGCTGTGGAA 456
||||| || ||||| |||||||||||||| || ||||| ||||||||||||||||| ||
Sbjct 359 GGAGATCCGATCATAAGTTACAAAGGTGGAGAAAATGGTTTTGAAGCAACTGCTGTTGAC 418
Query 457 TCTGATGAGAAAATTGATACTA-CAAGTGAACTGGTGACATCATACGCCCGTCACCTT-G 514
||||||||||| |||||||| | |||||||| |||||||||| || || ||||| ||| |
Sbjct 419 TCTGATGAGAAGATTGATAC-ATCAAGTGAATTGGTGACATCGTATGCTCGTCA-CTTAG 476
Query 515 AGAGGAAGCATGATATGCTTCTTGGAATGCTCTTTGTGGAAGGATCTTACAAAAAGCTTT 574
|||||||||| |||||| ||||||| |||||||||| ||||||||| || ||||||||||
Sbjct 477 AGAGGAAGCACGATATGATTCTTGGGATGCTCTTTGAGGAAGGATCATATAAAAAGCTTT 536
Query 575 ACAGCTATAAACACCTCATTAATGGTTTTGCAGCTCATGTATCCCCTGATCAGGCGGAAA 634
|||||||||||||||| || ||||| |||||||||||||| || || || ||||| ||||
Sbjct 537 ACAGCTATAAACACCTTATAAATGGATTTGCAGCTCATGTTTCTCCAGAGCAGGCAGAAA 596
Query 635 TGCTTCGTCGCGCGCCTGGTGTGAAATCTGTGGATAGAGATTGGAAAGTTAGGAAACTTA 694
||||||||||| |||||||||| |||||| || | |||||||||||| |||| ||| |
Sbjct 597 CACTTCGTCGCGCCCCTGGTGTGAGATCTGTAGACAAAGATTGGAAAGTGAGGAGACTCA 656
Query 695 CTACACATACACCACAGTTTTTGGGA-TTACCAACTGATGTTTGGCCAACTGGTGGTGGT 753
| |||||||||||| ||||| ||||| || ||||| |||||||||||||| || || |||
Sbjct 657 CCACACATACACCAGAGTTTCTGGGACTT-CCAACCGATGTTTGGCCAACAGGAGGCGGT 715
Query 754 TATGATAGAGCAGGGGAAGATATTGTTATTGGCTTTATTGACTCAGGGATATT-TCCACA 812
| ||||||||||||||||||||||||||| || || ||||||| ||||| || ||| ||
Sbjct 716 TTTGATAGAGCAGGGGAAGATATTGTTATAGGGTTCGTTGACTCGGGGAT-TTATCCGCA 774
Query 813 TCACCCAAGTTTTGCCTCTCACCACACAACAGTACCTTATGGCCCTCATCCT-AGTTACA 871
|||||| ||||| |||||||| | ||| | | ||||||||||||||| |||| | |||||
Sbjct 775 TCACCCGAGTTTCGCCTCTCA-C-CAC-AGATTACCTTATGGCCCTCTTCCTCA-TTACA 830
Query 872 AAGGGAAATGTGAAGAAGATCCTCATACTAAGATCAGTTTCTGCAATGGGAAGATCATAG 931
|||||||||||||||||||||||||||| |||| || |||||||| |||||||| | |
Sbjct 831 AAGGGAAATGTGAAGAAGATCCTCATACCAAGAAGAGCTTCTGCAACAGGAAGATCGTTG 890
Query 932 GAGCGCAGCATTTTGCTGAAGCCGCTAAAGCAGCTGGTGC-TTTCAATCCGGATATCGAC 990
|||| || |||||||||||||| |||||||| || || || ||| || || |||||||||
Sbjct 891 GAGCCCAACATTTTGCTGAAGCTGCTAAAGCGGCGGGGGCATTT-AACCCAGATATCGAC 949
Query 991 TTTGCTTCACCAATGGATGGCGATGGACATGGAAGTCACACAGCAGCTATTGCAGCTGGG 1050
| ||| || ||||||||||| ||||| ||||||||||| ||||||||||| |||||||||
Sbjct 950 TATGCATCGCCAATGGATGGTGATGGGCATGGAAGTCATACAGCAGCTATAGCAGCTGGG 1009
Query 1051 AACAATGGTATTCCAG-TGAGGATGCACGGTTATGAGTTTGGAAAAGCAAGCGGGATGGC 1109
|| || |||||||| | |||||||||| |||||||| ||||||||||| || ||||||||
Sbjct 1010 AATAACGGTATTCC-GTTGAGGATGCATGGTTATGAATTTGGAAAAGCGAGTGGGATGGC 1068
Query 1110 TCCTCGTGCAAGGATTGCTGTTTACAAAGCTCTCTACCGACTTTTTGGAGGCTTTGTAGC 1169
||||||||||||||||||||||||||| ||||| ||||| ||||||||||||||||| ||
Sbjct 1069 TCCTCGTGCAAGGATTGCTGTTTACAAGGCTCTGTACCGGCTTTTTGGAGGCTTTGTTGC 1128
Query 1170 TGATGTGGTGGCTGCCATTGATCAGGCTGTTCATGATGGAGTAGATATTTTGAGTCTCTC 1229
|||||| || ||||| |||||||||||||||||||||||||| ||||| |||| |||||
Sbjct 1129 TGATGTAGTTGCTGCGATTGATCAGGCTGTTCATGATGGAGTTGATATCCTGAGCCTCTC 1188
Query 1230 GGTTGGTCCAAACAGTCCTCCAGCTACTACAAAGACAACATTCTTGAATCCATTTGATGC 1289
||| |||||||||||||||||| | ||||| |||||||| ||||||||||||||||||||
Sbjct 1189 GGTCGGTCCAAACAGTCCTCCAACAACTACCAAGACAACGTTCTTGAATCCATTTGATGC 1248
Query 1290 TACACTTCTTGGGGCTGTAAAAGCTGGTGTTTTTGTTGCTCAAGCTGCTGGAAACGGAGG 1349
||| ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1249 TACTCTTCTTGGGGCCGTAAAAGCTGGTGTTTTCGTTGCTCAAGCTGCTGGAAACGGAGG 1308
Query 1350 TCCCTTTCCGAAAAC-TCTGGTTTCATACAG-CCCTTGGATAACTACTGTGGCTGCTGCA 1407
|||||||||||||| | | || ||||| || ||| |||||||||||||| || ||||||
Sbjct 1309 GCCCTTTCCGAAAACGT-TAGTATCATATAGTCCC-TGGATAACTACTGTCGCCGCTGCA 1366
Query 1408 ATTGATGATCGCAGATACAAAAATCATCTGACTCTTGGAAATGGTAAAATGCTTGCCGGA 1467
|||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||| ||
Sbjct 1367 ATTGATGATCGCAGATACAAAAATCATCTGACCCTTGGGAATGGAAAAATGCTTGCTGGG 1426
Query 1468 ATAGGATTATCTCCTTCTACTCGACCTCATCG-TTCATACAAGATGGTTTCTGCAAATGA 1526
|| || ||||| || | ||||| |||||||| || |||| ||||||||||||||||
Sbjct 1427 ATGGGGTTATCCCCACCAACTCGCCCTCATCGATTG-TACACTTTGGTTTCTGCAAATGA 1485
Query 1527 TGTTCTGCTTGG-TTCTTCTGGTATGAAA-TACAATCCGTCGGACTGCCAGA-AGCCAGA 1583
||||||||| || ||| |||| | | ||| || ||||| || || ||||||| | |||||
Sbjct 1486 TGTTCTGCT-GGATTCATCTGTT-TCAAAGTATAATCCATCTGATTGCCAGAGA-CCAGA 1542
Query 1584 AGTCTTGAACAAAAAATTAGTCGAAGGAAACATTCTGCTTTGTGGATATTCTTTCAA-TT 1642
|||||| ||||| ||||| || || ||||||||||| || ||||||||||| ||||| ||
Sbjct 1543 AGTCTTAAACAAGAAATTGGTTGAGGGAAACATTCTTCTCTGTGGATATTCATTCAACTT 1602
Query 1643 TCGTTGCTGGTTCAGCTTCCATCAAGAAAGTTGCTGAAACTGCCAAGCATCTAGGCGCTG 1702
| |||| |||| ||||||||||||||||||||| || ||| || |||||||| || ||||
Sbjct 1603 T-GTTGTTGGTACAGCTTCCATCAAGAAAGTTGTTGCAACCGCTAAGCATCTCGGTGCTG 1661
Query 1703 CTGGTTTCGTTCTTGTTGTCGAAAACGTTTCTCCAGGAACAAAATTCGATCCCGTTCCTT 1762
||||||| ||||||||||| ||||| || ||||| ||||| ||||||||| | |||||||
Sbjct 1662 CTGGTTTTGTTCTTGTTGTTGAAAATGTATCTCCGGGAACCAAATTCGATTCAGTTCCTT 1721
Query 1763 CTTGC-ATTCCTGGGATTCT-GATTACAGATGTCTCTAAGTCAATGGATTTGATTGATTA 1820
|| || ||||| || || || |||||||||||| |||||||||||||||||||| |||||
Sbjct 1722 CT-GCCATTCCAGGAAT-CTTGATTACAGATGTGTCTAAGTCAATGGATTTGATCGATTA 1779
Query 1821 CTACAATGTCACAACGTCAAGAGATTGGATGGGAAGGGTAAAG-GACTTTAAAGCTGAAG 1879
|||||| |||| || ||||| ||||||| ||| | ||||| | ||||||||| || |
Sbjct 1780 CTACAACGTCAGTACATCAAGGGATTGGACAGGACGAGTAAAAAG-CTTTAAAGCCGAGG 1838
Query 1880 GAAGCATCGGAGACGGTTTGGAACCCATTCTTCACAAATCCGCACCTGAAGTTGC-TCTG 1938
||||||||||||| || || | |||| ||||||||||||| |||||| |||| || | ||
Sbjct 1839 GAAGCATCGGAGATGGCTTAGCACCCGTTCTTCACAAATCAGCACCTCAAGTGGCGT-TG 1897
Query 1939 TTCTCAGCTCGAGGACCCAATACCAAAGATTTCAGCTTTCAGGATGCTGATCTTCTCAAA 1998
||||||||| ||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 1898 TTCTCAGCTAGAGGACCCAATACCAAAGATTTCAGCTTTCAAGATGCTGATCTTCTTAAA 1957
Query 1999 CCAGATATTCTTGCTCCAGGCTCTTTAATATGGTCTGCCTGGTCTGCAAATGGAACAGAC 2058
|||||||||||||| || || | | |||||||| |||| |||| | ||||||| ||||||
Sbjct 1958 CCAGATATTCTTGCACCTGGTTATCTAATATGGGCTGCTTGGTGTCCAAATGGGACAGAC 2017
Query 2059 GAGGCTAACTATATCGGCGAAGGATTTGCACTAATTTCTGGCACAAGCATGGCTGCACCA 2118
||| | || ||| | || ||||||||||| ||||| || || ||||||||||||||||||
Sbjct 2018 GAGCCCAATTATGTTGGTGAAGGATTTGCGCTAATATCAGGAACAAGCATGGCTGCACCA 2077
Query 2119 CACATTGC-GGGTATTGCTGCTCTGGTGAAACAGAAGCATCCTCAATGGAGTCCAGCTGC 2177
||||| || ||| || ||||| || ||||| |||||||||||||||||||| ||||||||
Sbjct 2078 CACATAGCCGGG-ATAGCTGCGCTTGTGAAGCAGAAGCATCCTCAATGGAGCCCAGCTGC 2136
Query 2178 CATTAAATCAGCTTTGATGACGACTTCAACAGTCATAGATAGAGCAGGAAGACCTCTCCA 2237
|| ||||||||||||||||| || |||||||||||||||||||||||||| | ||| ||
Sbjct 2137 TATCAAATCAGCTTTGATGACAACCTCAACAGTCATAGATAGAGCAGGAAGGCTTCTTCA 2196
Query 2238 AGCACAACAATATTCTGAAACAGAGACAGTAACACTTGTTAAAGCAACTCCGTTT-GATT 2296
||||| || ||||| || || ||| | || || ||||||||||| ||||| ||| ||||
Sbjct 2197 GGCACAGCAGTATTCAGACACTGAGGCTGTCACGCTTGTTAAAGCTACTCC-TTTCGATT 2255
Query 2297 ATGGAAGCGGTCATGTCAATCCAAGCGCTGCTCTAGACCCTGGTCTCATCTTTGATGCAG 2356
| ||||| ||||||||||| ||||| |||||| |||| |||||||| |||||||||||||
Sbjct 2256 ACGGAAGTGGTCATGTCAACCCAAGTGCTGCTTTAGATCCTGGTCTTATCTTTGATGCAG 2315
Query 2357 GTTATGAGGATTATATAGGGTTCTTGTGCACCACACCTGGTATC-GATGCTCACGAGATA 2415
|||||||||| ||| |||| ||||||||||| || || || ||| | ||| |||||||||
Sbjct 2316 GTTATGAGGACTATCTAGGATTCTTGTGCACAACCCCAGGGATCAG-TGCCCACGAGATA 2374
Query 2416 AAAAACTT-CACAAACACTCCATGCAATTTCAAAATGGTTCATCCTTCAAACTTCAACAC 2474
| ||| || | | ||||| || || || | | | ||| |||||||||||||| || |
Sbjct 2375 AGAAA-TTACTCGAACACACCCTGTAACTACGACATGAAACATCCTTCAAACTTTAATGC 2433
Query 2475 GCCATCCATAGCCA-TCTCTCATCTCGTCAGAACACAAACCGTAACCAGAAGAGTGACGA 2533
||||| ||||| | | ||||| || || | || || |||||||| || ||||| ||||
Sbjct 2434 ACCATCTATAGC-AGTTTCTCACCTTGTGGGGACCCAGACCGTAACAAGGAGAGTAACGA 2492
Query 2534 ATGTTGCGGAAGAAGAAGAAACATACACAATCACATCGAGGATGGAGCCAG-CAATCGCC 2592
|||| || || | ||||||||||||||||| ||| | |||||| |||| | | ||||||
Sbjct 2493 ATGTGGCAGAGGTGGAAGAAACATACACAATAACAGCTAGGATGCAGCC-GTCTATCGCC 2551
Query 2593 ATCGAAGTGAGTCCTCCTGCAATGACAGTAAGAGCGGGCGCTTCTAGAACCTTTTCGGTG 2652
|||||||||| || || ||||||||| | ||| | ||||||||||||||||| || ||
Sbjct 2552 ATCGAAGTGAACCCACCAGCAATGACACTCAGACCAGGCGCTTCTAGAACCTTCTCAGTC 2611
Query 2653 ACTCTAACAGTGAGATCAGTGACTGGAGCT-TATAGCTTCGGACAGGTTACA-TTGAAAG 2710
||| | || |||||||| || |||||| | || |||||||| |||| | | |||||||
Sbjct 2612 ACTATGACCGTGAGATCGGTTTCTGGAG-TATACAGCTTCGGGGAGGTGA-AGTTGAAAG 2669
Query 2711 GAAGCCGAGGGCATAAAGTGACTCTCCCTGTGGTTGCTATGGGACAAAGGCGATAAAGAA 2770
| || ||||||||||| || | | || ||||| ||| | ||||| |||||| || ||
Sbjct 2670 GTAGTCGAGGGCATAAGGTCAGGATTCCGGTGGTGGCTCTAGGACATCGGCGATGAACAA 2729
Query 2771 AACATATGAGATTTTGTAACATTATTATTGTTATTATTTTTGTAATATGCAGTAATAATA 2830
| | | || | |||||||| | |||||| || || | ||||||||||||||||| |
Sbjct 2730 ATCGTGTGGG-TTTTGTAA--T-ATTATT-TT-TT-T----GTAATATGCAGTAATAAGA 2778
Query 2831 AGAAGGTAGTTCT 2843
| |||||||||
Sbjct 2779 -G--GGTAGTTCT 2788
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 111756778830
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5