BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G30030.1
Length=1275
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491753 jgi|Araly1|491753|fgenesh2_kg.7__1186__AT4G30030.1 1740 0.0
> Ahg491753 jgi|Araly1|491753|fgenesh2_kg.7__1186__AT4G30030.1
Length=1305
Score = 1740 bits (942), Expect = 0.0
Identities = 1198/1314 (91%), Gaps = 48/1314 (4%)
Strand=Plus/Plus
Query 1 ATGGCCATCACTCTACTACCATTACGTATTCGTGCCTCCCTTCTTATCATTATATTCGCT 60
|||||||| |||| ||| |||||| ||||||| || |||||||||||||| ||||||||
Sbjct 1 ATGGCCAT--CTCT-CTAACATTACATATTCGTCCCGCCCTTCTTATCATTCTATTCGCT 57
Query 61 CTCACT-TGTTCAAAGGAATGCACCTCG---C-A-TT-C-C--CGACT-TACGC-TAA-G 107
|||| | || |||| ||||||||||| | | || | | | || || | ||
Sbjct 58 CTCA-TGTGCCCAAACCAATGCACCTCGTATCGATTTACGCTAAGGCTACACACAAAATC 116
Query 108 AACCAAAACCCAAGAATCATCGAAAATCAAAATC-GGTTACTTGCATTCCAAGTCAA-CC 165
|| ||||||| |||||||| | ||||| |||| | |||||||||||||||||||||| ||
Sbjct 117 AATCAAAACCAAAGAATCACCAAAAAT-AAAACCTGGTTACTTGCATTCCAAGTCAACCC 175
Query 166 CC-CG-CTTCTCGCCTAGATAACTTGT-------GG----A-C------CGTCTCACATG 205
|| || ||||||||||||||||||||| || | | |||||||||||
Sbjct 176 CCGCGCCTTCTCGCCTAGATAACTTGTGGACCACGGAAATAGCGGATATCGTCTCACATG 235
Query 206 TCACTCCTATTCCGAATCCAGCAGCATTCCTTGCAAATATTTCTATCGGCAATCCACCTG 265
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
Sbjct 236 TCACTCCTATTCCGAATCCAGCAGCATTCCTTGCAAATATTTCTATCGGCGATCCACCGG 295
Query 266 TCCCGCAACTCTTACTCATAGATACAGGTAGTGACCTAACTTGGATCCATTGTCTTCCCT 325
|||| ||||||||||||||||| |||||||||||||||||||||||||| ||||| ||||
Sbjct 296 TCCCACAACTCTTACTCATAGACACAGGTAGTGACCTAACTTGGATCCAGTGTCTCCCCT 355
Query 326 GCAAATGTTACCCTCAAACAATCCCTTTTTTCCACCCTTCAAGATCTTCCACTTACCGAA 385
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 356 GCAAATGTTACCCTCAAACAATCCCTTTTTTCCACCCTTCAAGATCTTCCACTTACCGTA 415
Query 386 ACGCTTCTTGTGTATCCGCACCACACGCCATGCCCCAAATCTTTCGCGACGAAAAGACTG 445
||||||| |||| |||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 416 ACGCTTCCTGTGAATCCGCACCACATGCCATGCCCCAAATCTTTCGCGACGAAAAGACTG 475
Query 446 GAAACTGCCAATATCACCTACGCTACCGCGACTTTTCTAACACCAGAGGCATTTTAGCTG 505
||||||||| |||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 476 GAAACTGCCGATATCACCTACGCTACCGTGACTTTTCTAACACAAGAGGCATTTTAGCTA 535
Query 506 AGGAAAAACTCACATTTGAAACATCTGACGACGGTTTAATCTCTAAACAAAACATTGTTT 565
| ||||||||||||||| ||||||||||||| || ||||||||||||| |||||||||||
Sbjct 536 AAGAAAAACTCACATTTCAAACATCTGACGAGGGCTTAATCTCTAAACCAAACATTGTTT 595
Query 566 TCGGATGCGGACAAGATAACTCCGGTTTCAC-CAAATATAGCGGCGTGCTCGGTTTAGGT 624
|||| ||||||||||| |||||||||||||| | |||| |||||||||||||||||||||
Sbjct 596 TCGGTTGCGGACAAGACAACTCCGGTTTCACTC-AATACAGCGGCGTGCTCGGTTTAGGT 654
Query 625 CCAGGTACATTCTCCATAGTAACCCGCAATTTCGGCTCTAAGTTCTCGTACTGCTTCGGC 684
|| |||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 655 CCTGGTACATTCTCCATAGTAACCCGCAATTTCGGCTCTAAATTCTCATACTGCTTCGGC 714
Query 685 AGCCTAACCAATCCGACTTACCCTCACAACATT-CTAATCCTCGGAAACGGCGCCAAAAT 743
||||| | | |||||||||||||||||||| || |||||||||||||||||||||| |||
Sbjct 715 AGCCTTATCGATCCGACTTACCCTCACAAC-TTCCTAATCCTCGGAAACGGCGCCAGAAT 773
Query 744 CGAAGGCGATCCAACACCTTTACAAATATTCCAAGACCGTTACTACCTTGACCTCCAAGC 803
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 774 CGAAGGCGATCCAACACCTTTACAAATATTCCAAGACCGTTACTACCTTGACCTGCAAGC 833
Query 804 AATCTCCTTT-GGAGAGAAACTTCTCGATATCGAACCCGGAACT-TTCCAGAGATATCGG 861
||||| |||| |||||||||||||| |||||||||||||||| | |||||||||||| ||
Sbjct 834 AATCT-CTTTAGGAGAGAAACTTCTTGATATCGAACCCGGAA-TCTTCCAGAGATATAGG 891
Query 862 TCCCAAGGAGGCACGGTCATCGACACAGGCTGTTCTCCAACGATTCTAGCCAGAGAAGCT 921
||| ||||||| || ||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 892 TCCAAAGGAGGAACAGTCATCGACACGGGCTGTTCACCAACGATTCTAGCCAGAGAAGCT 951
Query 922 TACGAAACTCTCTCTGAAGAAATTGATTTTCTTCTAGGAGAAGTTCTCAGACGCGTTAAA 981
|| |||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 952 TATGAAACTCTCTCTGAAGAAATCGATTTTCTTCTTGGAGAAGTTCTCAGACGCGTTAAA 1011
Query 982 GATTGGGATCAATACACGACTCCTTGCTACGAAGGGAATCTTAAACTTGATCTCTACGGC 1041
|||||||| |||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 1012 GATTGGGAGCAATACACGAATCATTGCTACGAAGGGAATCTTAAACTTGATCTCTACGGC 1071
Query 1042 TTTCCCGTCGTCACGTTCCATTTCGCCGGCGGCGCTGAGCTGGCGTTAGACGTTGAGAGT 1101
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1072 TTTCCCGTCGTCACGTTCCATTTCGCCGGCGGCGCTGAGCTGGCGTTAGACGTTGAGAGT 1131
Query 1102 TTGTTCGTTAGTAGTGAAAGTGGAGATAGCTTTTGCTTGGCTATGACTATGAACACGTTT 1161
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1132 TTGTTCGTTAGCAGTGAAAGTGGAGATAGCTTTTGCTTGGCTATGACTATGAACACGTTT 1191
Query 1162 GATGATATGAGCGTTATTGGTGCCATGGCTCAGCAGAATTATAATGTTGGCTATAATCTT 1221
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1192 GATGATATGAGCGTTATTGGTGCCATGGCTCAGCAGAATTATAATGTTGGTTATAATCTT 1251
Query 1222 CGAACCATGAAGGTTTATTTCCAGAGAACTGATTGTGAGATTATTGATTCTTAA 1275
||||| |||||||||||||||||||| ||||||||||||||| |||||||||||
Sbjct 1252 CGAACAATGAAGGTTTATTTCCAGAGGACTGATTGTGAGATTCTTGATTCTTAA 1305
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47653646250
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5