BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G30040.1
Length=1284
Score E
Sequences producing significant alignments: (Bits) Value
Ahg944997 jgi|Araly1|944997|scaffold_701226.1 1917 0.0
> Ahg944997 jgi|Araly1|944997|scaffold_701226.1
Length=1358
Score = 1917 bits (1038), Expect = 0.0
Identities = 1202/1283 (94%), Gaps = 4/1283 (0%)
Strand=Plus/Plus
Query 1 ATGGCGATTTTCTTTACATCTCCCCTCTTCTTTCTCATCATCCTTTGTTTCTCTATCTCC 60
||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||
Sbjct 21 ATGGCGATTTTCTTTACATCTCCCCTCTTCTTTTTCATCATCCTTTGTTTCTTTATCTCC 80
Query 61 GTGGTTCACTTGTCAGCATCACCAACTCTTGTTCTCAATCTCGTTCATTCCTACCACATA 120
|| ||||||||||||||||||||||||||||||||||||||||||| ||| |||| |||
Sbjct 81 GTATTTCACTTGTCAGCATCACCAACTCTTGTTCTCAATCTCGTTCACTCCAACCAAATA 140
Query 121 TACTCTCGAAAACCACCACATGTCTATCATATCAAGGAAGCGTCGGTCGAACGTCTAGAG 180
|| || | | || ||||||| |||| ||||||||||||||| || || ||||||||||||
Sbjct 141 TATTCCCTACAATCACCACAAGTCTCTCATATCAAGGAAGCATCCGTTGAACGTCTAGAG 200
Query 181 TACTTGAAAGCCAAGACAACTGGAGATATCATTGCACACCTTTCCCCTAACGTCCCTATC 240
||||||||||||||| |||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 201 TACTTGAAAGCCAAGGCAACGGGAGATATCATCGCACACCTTTCCCCTAACGTCCCTATC 260
Query 241 ATCCCACAAGCTTTCTTAGTGAACATATCAATAGGTAGCCCACCAATCACACAACTTCTC 300
||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||
Sbjct 261 ATCCCACAAGCTTTCTTAGTGAACATATCAATAGGTAGCCCACCAGTCACGCAACTTCTC 320
Query 301 CACATGGACACGGCTAGTGATCTTCTATGGATACAATGTCTTCCTTGTATCAATTGCTAT 360
|||||||||||||| ||||||||||||||| ||||||||| |||||| ||||||||||||
Sbjct 321 CACATGGACACGGCCAGTGATCTTCTATGGCTACAATGTCGTCCTTGCATCAATTGCTAT 380
Query 361 GCTCAAAGTCTTCCTATTTTCGATCCTTCTCGATCTTATACTCACCGCAACGAAACATGT 420
||||||||||||||||| |||||||||||| ||||||||||||| ||||||||| | |||
Sbjct 381 GCTCAAAGTCTTCCTATCTTCGATCCTTCTAGATCTTATACTCATCGCAACGAATCTTGT 440
Query 421 AGAACATCTCAATACTCTATGCCTAGCTTAAAATTCAATGCAAACACAAGATCTTGCGAG 480
||||| ||||||||||||||||||||||||| |||||||||||| || ||||||||||||
Sbjct 441 AGAACTTCTCAATACTCTATGCCTAGCTTAAGATTCAATGCAAAAACCAGATCTTGCGAG 500
Query 481 TATTCCATGAGATACGTGGATGATACAGGGAGCAAAGGCATACTAGCTAGAGAAATGTTG 540
||||||||||||||| |||||| |||||||||||||||||||||||||| ||||||| ||
Sbjct 501 TATTCCATGAGATACATGGATGGTACAGGGAGCAAAGGCATACTAGCTAAAGAAATGCTG 560
Query 541 CTGTTTAATACAATCTACGATGAGTCTTCGTCAGCTGCTTTACATGACGTTGTTTTTGGT 600
|||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 561 ATGTTTAATACAATCTACGATGAGTCTTCATCAGCTGCTTTACATGATGTTGTTTTTGGT 620
Query 601 TGTGGCCATGATAACTACGGTGAGCCTCTAGTTGGAACCGGCATTCTCGGTTTAGGGTAT 660
||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 621 TGTGGCCATGATAACTACGGTGAACCTCTAGTTGGAACCGGCATTCTCGGTTTAGGATAT 680
Query 661 GGTGAATTCTCGTTGGTTCATAGATTTGGTA-AAAAGTTCTCATACTGCTTTGGAAGCTT 719
||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||
Sbjct 681 GGTGAATTCTCGTTGGTTCATAGATTTGGTACAAAA-TTCTCATACTGCTTTGGAAGCTT 739
Query 720 AGATGATCCTTCTTATCCACATAACGTCTTAGTCTTGGGAGATGATGGTGCCAACATTTT 779
|||||||||||||||||| |||||||| ||||| ||||||||||||||||||||||||||
Sbjct 740 AGATGATCCTTCTTATCCTCATAACGTTTTAGTTTTGGGAGATGATGGTGCCAACATTTT 799
Query 780 GGGAGATACCACACCGTTAGAGATCCACAATGGTTTTTATTACGTTACAATCGAAGCCAT 839
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||
Sbjct 800 GGGAGATACCACACCGTTAGAGATTTACAATGGTTTTTATTACGTTACAATCGAAGCGAT 859
Query 840 AAGCGTGGATGGAATCATTCTCCCGATCGATCCACGTGTATTCAACCGTAATCACCAAAC 899
|||||||||||||| |||||||||||||||||| | |||||||||||||||||||||||
Sbjct 860 CAGCGTGGATGGAATAATTCTCCCGATCGATCCATGGGTATTCAACCGTAATCACCAAAC 919
Query 900 CGGTTTAGGCGGTACAATAATCGACACGGGAAATTCATTAACAAGCCTAGTCGAAGAAGC 959
|||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 920 TGGTTTAGGTGGTACAATAATCGACACAGGAAATTCATTAACAAGCCTAGTCGAAGAAGC 979
Query 960 TTACAAGCCATTGAAGAACAGAATTGAAGAT-ATTTTTGAAGGAAGGTTTACGGCAGCGG 1018
||||||||||||||||||| |||||||||| ||||| ||||||||||||||||| ||||
Sbjct 980 ATACAAGCCATTGAAGAACAAAATTGAAGATTATTTT-GAAGGAAGGTTTACGGCCGCGG 1038
Query 1019 ATGTGAGTCAAGATGACATGATTAAAATGGAGTGCTACAATGGAAACTTTGAGCGAGATT 1078
|||||| ||||||||||||| ||||| |||||||||||||||||||||| ||||||||||
Sbjct 1039 ATGTGAATCAAGATGACATGTTTAAAGTGGAGTGCTACAATGGAAACTTAGAGCGAGATT 1098
Query 1079 TGGTCGAGTCTGGATTTCCGATTGTAACGTTTCATTTCTCAGAAGGAGCAGAGTTGTCAT 1138
|||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1099 TGGTCGAGTCCGGATTTCCGATTGTAACGTTTCATTTCTCAGATGGAGCAGAGTTGTCAT 1158
Query 1139 TGGATGTGAAGAGTTTGTTCATGAAGCTTTCACCAAATGTTTTCTGCTTAGCCGTGACTC 1198
|||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1159 TGGATGTGAAAAGTGTGTTCATGAAGCTTTCACCAAATGTTTTCTGCTTAGCCGTGACCC 1218
Query 1199 CTGGTAATTTGAACAGCATTGGTGCGACGGCTCAACAGAGTTATAACATAGGCTATGATC 1258
|||||||| ||||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 1219 CTGGTAATATGAACAGCATTGGTGCGACGGCTCAACAGAGCTATAACATAGGGTATGATC 1278
Query 1259 TCGAAGCAATGGAGGTTTCTTTT 1281
| ||||||| | || | ||||||
Sbjct 1279 TTGAAGCAAAGAAGATCTCTTTT 1301
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47996752503
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5