BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G30050.1
Length=748
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491751 jgi|Araly1|491751|fgenesh2_kg.7__1184__AT4G30050.1 846 0.0
> Ahg491751 jgi|Araly1|491751|fgenesh2_kg.7__1184__AT4G30050.1
Length=681
Score = 846 bits (458), Expect = 0.0
Identities = 623/698 (89%), Gaps = 29/698 (4%)
Strand=Plus/Plus
Query 52 ATTCCGTTTTAAAATCTTACAAGA--TCTTCAATACAAAATCTAATATATTT-CTaaaaa 108
||||| | |||||||||||||||| ||||| ||| ||||||||||| ||| |||| ||
Sbjct 1 ATTCCATATTAAAATCTTACAAGACCTCTTCCATATGAAATCTAATATGTTTCCTAACAA 60
Query 109 gaaaaaaaaaaTCTA-TATATTAATGAAGCCCTAATTAACCTTATCCAAT-AAGACGCCA 166
| |||| ||||| || | | ||||||||||||||||||||||| ||| || ||||||
Sbjct 61 G-AAAATAAAAT-TACAAGACAAATGAAGCCCTAATTAACCTTATAAAATAAATACGCCA 118
Query 167 AAAATGTCCACTCGATTGGGAAAACTCAG--T-TTCTTCTTCATCATCGCCTTCCTCGTC 223
| ||||||||||| ||| ||||||||||| | |||||||||||||||||||||||||||
Sbjct 119 ACAATGTCCACTCAATTAGGAAAACTCAGCTTCTTCTTCTTCATCATCGCCTTCCTCGTC 178
Query 224 CTGCTTTTTGTGGGAGCTTCAAAGGCTCGCTATCTCTATCGTCAGCCAATCATCACTGCT 283
||||||||||||||||||||||||||||||| || | ||| ||| |||||||||||
Sbjct 179 TTGCTTTTTGTGGGAGCTTCAAAGGCTCGCTA--TC--T--TCACCCACTCATCACTGCT 232
Query 284 GATCAAATCCAAATAAATCATAACCAAATTGAAGAATATGTCGAGCCAACCAACGAGAAT 343
|||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||
Sbjct 233 GATCAAATCCAAATAAATCATAACCAAATTGAAGAATATGTCGACCCAACCGACGAGAAT 292
Query 344 GCTAAATCAGCAGCGTATTATGTTGACCTAATCAATCAGAATACCAAATCCGCATACCAT 403
| ||||||||||| ||||||||||||||||||||| ||||| ||||||| |||||||||
Sbjct 293 ACCAAATCAGCAGCATATTATGTTGACCTAATCAATGAGAATGCCAAATCTGCATACCAT 352
Query 404 GCTTACTTGCATACTAAGCGTCTAAACATATTCGGCACCGAATGGCTATGGAGGATTGAT 463
||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct 353 GCTTACTTGCATACTAAGCGTCTAAACATATTCGGAATCGAATGGCTATGGAGGATTGAT 412
Query 464 GTActtctccttcttctttgtttgtctttctttgttaccgatttatcttctagggttttc 523
|| ||| |||||||||||||||| ||||| || |||||||||||||||| ||||||||||
Sbjct 413 GTCCTTTTCCTTCTTCTTTGTTTATCTTTGTTCGTTACCGATTTATCTTTTAGGGTTTTC 472
Query 524 ttttgCATCGCAAGCAGATGTTCTGCTAAGGTTTCAAAATCTATATGATACTTGAGATCG 583
|||||||||||| ||||||||||||||||| |||||||||||||||||| | | |
Sbjct 473 TTTTGCATCGCAGGCAGATGTTCTGCTAAGTTTTCAAAATCTATATGAT-C--G---T-- 524
Query 584 TTTGTTATCGttttttt-GGATTATTCATTCAACGTTGTTCCAAGCATTTTTACTTATGA 642
|| ||||| |||||||| ||||||||||||||||||||||||||| |||||||||||||
Sbjct 525 TT-GTTATTGTTTTTTTTGGATTATTCATTCAACGTTGTTCCAAGTTTTTTTACTTATGA 583
Query 643 TTCGTGCTACATCATTTCTTTGAAACTATCGAACT---GTCCAAGTAACAATGAAAATGT 699
||| |||||||| |||||||||||||||||| ||| ||||||||||||||||||||||
Sbjct 584 TTCTTGCTACATTATTTCTTTGAAACTATCGTACTCATGTCCAAGTAACAATGAAAATGT 643
Query 700 AACTACTAACAATTGTATCTTATTTTCAGGCAATCAAG 737
|||||||||||||||||||||||||||| |||||||||
Sbjct 644 AACTACTAACAATTGTATCTTATTTTCACGCAATCAAG 681
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27562868991
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5