BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G30060.1 Length=2003 Score E Sequences producing significant alignments: (Bits) Value Ahg491750 jgi|Araly1|491750|fgenesh2_kg.7__1183__AT4G30060.1 2654 0.0 Ahg480818 jgi|Araly1|480818|fgenesh2_kg.3__3519__AT2G19160.1 989 0.0 > Ahg491750 jgi|Araly1|491750|fgenesh2_kg.7__1183__AT4G30060.1 Length=1920 Score = 2654 bits (1437), Expect = 0.0 Identities = 1829/2002 (91%), Gaps = 92/2002 (5%) Strand=Plus/Plus Query 12 AAAAATTTGCTTCCTCTGTTTCGAACCCAATTGGGCATCTTCGTCGTCTTCTTCTTCAAC 71 |||||||||||||||||||||||||||||||| || | | | ||||| |||||| | Sbjct 1 AAAAATTTGCTTCCTCTGTTTCGAACCCAATT-GG-----T-GGCATCTTCGTCTTCATC 53 Query 72 ATTCATCATCGTCATCAATTTCTCTGTAGCT-CTTTCACAAGTATTTCTTCAATTTCATA 130 |||||||||||||||||| | ||||||||| |||||||||| ||||||||||||||||| Sbjct 54 -TTCATCATCGTCATCAATATATCTGTAGCTCCTTTCACAAGCATTTCTTCAATTTCATA 112 Query 131 GCGAGAGAGAAATAAAAGGGAGAACACAGAGATCAGAGAGAAATTCAAAAACGAATCCGT 190 || ||||| | ||| |||||||||||||||| | |||||||||||| Sbjct 113 GC--GAGAG-------A--GAG-----AGAGATCAGAGAGAAAAAC-GAAACGAATCCGT 155 Query 191 GTGAGGACGTTTTAAAACTGCCAAAGAGACGTTTTACTTTTACATGCAC--ATAGAGACA 248 | ||| | | ||||||||| |||||||||| ||| ||||||||| ||| ||| | Sbjct 156 GAGAGAAAATCTTAAAACTGACAAAGAGACG--TTA----TACATGCACATATATAGATA 209 Query 249 TACGTTTATTTTGTGTAGCTATAGCTC-TTAAGAGTTTGAATTTTCTCGAGATCTTTGAC 307 ||||||| ||||||||||||||||||| || ||||||||||||||| ||||||||||||| Sbjct 210 TACGTTTGTTTTGTGTAGCTATAGCTCTTTGAGAGTTTGAATTTTCCCGAGATCTTTGAC 269 Query 308 CGGAGCGAAAACGACGAAGATATAGAAAATCTAGCGAAACGACGATTCGGACTTGGGAGA 367 ||||| |||||||| |||||||||| ||||||||| ||| |||| | || || | | Sbjct 270 CGGAGGGAAAACGAAGAAGATATAG-AAATCTAGC--AAC-ACGA--C-GA-TT-CG-G- 318 Query 368 CTCTCTTGCGTTGTGCTTGGATCTGGTTCCGTTGTAAATTTGAGGTTTTGATTGAC-CAG 426 ||||||| ||||||||||||||||||||||||||||||| ||||| ||| | ||| Sbjct 319 --CTCTTGCCTTGTGCTTGGATCTGGTTCCGTTGTAAATTTCAGGTTCCAATT--CTCAG 374 Query 427 AGGAAGTTAGC-TTTGTTCATCTAGATTAGGCTATTATTGAGGTGTTGTTGTGGCTCTGA 485 | ||||||||| |||||||| ||||||||||| |||||||||||||||||||||||| Sbjct 375 ACGAAGTTAGCTTTTGTTCACCTAGATTAGGC---TATTGAGGTGTTGTTGTGGCTCTG- 430 Query 486 AGCAATAAAGGATTTGATGAGATGAAGGCAGTTAAAAGATGGAGTATAGGGAACTTA-GC 544 | |||||||| ||||||||||||||||||||||||||||||||| ||||||||||| || Sbjct 431 CG-AATAAAGGTTTTGATGAGATGAAGGCAGTTAAAAGATGGAGTCTAGGGAACTTAGGC 489 Query 545 GGACATTCCCGTGTCTTTGCCTGGAGCTCGATACCGTGCTCCTCCTCCAGGAAGAAGACG 604 || ||||||||||||||||||||||||||| ||||||||||| | || | |||| |||| Sbjct 490 -GATATTCCCGTGTCTTTGCCTGGAGCTCGACACCGTGCTCCT-C-CC-GCAAGACGACG 545 Query 605 AGTATGGATCATCATGGTGCTTTCACTGATCACCATGTTCTTTATTATGGCTTACATGTA 664 |||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| Sbjct 546 AGTATGGATCATCATGGTGCTTTCACTGATCAGCATGTTCTTTATTACGGCTTACATGTA 605 Query 665 TCCTCATCATAGTAAACGTGCTTGTTATATGATTTCATCAAGAGGATGCAAGGCTTTAGC 724 ||||||||||||||| | |||||||||||||||||||||||||||||||| |||||||| Sbjct 606 CCCTCATCATAGTAAAAGGGCTTGTTATATGATTTCATCAAGAGGATGCAAAGCTTTAGC 665 Query 725 TGATTGGCTTCCACCTTCTCTGAGGGAATATTCAGATGATGAGATTGCAGCTCGTGTAGT 784 ||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||| Sbjct 666 TGATTGGCTTCCACCTTCTCTGAGGGAATTTTCAGATGATGAGATTGCAGCTCGCGTAGT 725 Query 785 CATTAGAGAAATATTGAGTTCACCTCCTGTTATTAGAAAGAACTCTAAAATTGCTTTCAT 844 |||||||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||| Sbjct 726 CATTAGAGAAATATTGAGTTCACCTCCTGTCATTAGAAAGAATTCTAAAATTGCATTCAT 785 Query 845 GTTTTTAACTCCTGGTACATTGCCTTTTGAGAGGCTTTGGGACAGATTTTTCCTGGGCCA 904 |||||||||||| |||||||| ||||| ||||||||||||||||||||||||| |||||| Sbjct 786 GTTTTTAACTCCCGGTACATTACCTTTCGAGAGGCTTTGGGACAGATTTTTCCAGGGCCA 845 Query 905 TGAAGGGAAATTCTCTGTTTATATACATGCATCAAAGGAAAGGCCAGTTCACTACAGTCG 964 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 846 TGAAGGGAAATTCTCTGTTTATATACATGCATCAAAGGAAAGGCCAGTTCACTACAGTCG 905 Query 965 TTACTTTCTCAACCGCGAAATTCGTAGTGATGAGGTGGTGTGGGGAAGGATATCAATGGT 1024 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 906 TTACTTTGTCAACCGCGAAATTCGTAGTGATGAGGTGGTGTGGGGAAGGATATCAATGGT 965 Query 1025 TGACGCAGAGAGACGGTTGTTAGCTAATGCTCTTAGAGACACTTCTAACCAGCAATTTGT 1084 ||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| Sbjct 966 TGACGCAGAGAGACGGTTGTTAGCTAATGCTCTCAGAGACACTTCAAACCAGCAATTTGT 1025 Query 1085 TTTACTCTCTGATAGTTGTGTACCACTTCGAAGTTTTGAATACATTTACAATTACCTGAT 1144 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1026 TTTACTCTCTGATAGTTGTGTACCACTTCGAAGTTTTGAATACATTTACAATTACCTGAT 1085 Query 1145 GCACAGCAATCTCAGCTATGTTGACTGCTTTGACGATCCAGGTCAACATGGAGCAGGCAG 1204 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1086 GCACAGCAATCTCAGCTATGTTGACTGCTTTGACGATCCAGGTCAACATGGAGCAGGCAG 1145 Query 1205 GCATATGAATCACATGTTGCCTGAAATCCCAAAGAAGGATTTTCGAAAGGGTGCACAGTG 1264 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1146 GCATATGAATCACATGTTGCCTGAAATCCCAAAGAAGGATTTTCGAAAGGGTGCACAGTG 1205 Query 1265 GTTCACCATGAAGCGACAACACGCTGTAGCAACTATGGCAGACAGTCTTTACTACTCTAA 1324 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 1206 GTTCACCATGAAGCGACAACACGCTGTAGCAACTATGGCAGATAGTCTTTACTACTCTAA 1265 Query 1325 ATTCCGAGATTACTGCGGGCCAGGTATAGAGAACAACAAGAACTGCATAGCTGATGAACA 1384 ||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1266 ATTTCGGGATTACTGCGGGCCAGGTATAGAGAACAACAAGAACTGCATAGCTGATGAACA 1325 Query 1385 CTATCTGCCAACATTCTTTCATATGCTTGATCCCGGTGGCATTGCTAACTGGACTGTAAC 1444 ||||||||||||||||||||||||||| ||||||||||| ||| |||||||||||||||| Sbjct 1326 CTATCTGCCAACATTCTTTCATATGCTCGATCCCGGTGGTATTTCTAACTGGACTGTAAC 1385 Query 1445 ACAAGTTGATTGGTCTGAGAGAAAGTGGCATCCCAAAACATATATGCCTGAGGATATCAC 1504 ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 1386 ACAAGTTGATTGGTCTGAGAGAAAGTGGCATCCCAAAACGTATATGCCTGAGGATATCAC 1445 Query 1505 ACACGAGTTACTAAACAACCTCACGTCTACTGACACACTCGTACATGTCACAAGTGTTGG 1564 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1446 ACCCGAGTTACTAAACAACCTCACGTCTACTGACACACTCGTACATGTCACAAGTGTTGG 1505 Query 1565 GATGGGTGAAGAAATATGGATGCCTTGTATGTGGAACGGAATCCAAAGACCGTGTTACTT 1624 ||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| Sbjct 1506 GATGGGTGAAGAAATATGGATGCCTTGTATGTGGAACGGAATCAAAAGACCGTGCTACTT 1565 Query 1625 GTTTGGAAGGAAATTTCACCCGGATACACTCGATAAACTGTTGGATCTCTTCTCAAATTA 1684 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1566 GTTTGGAAGAAAATTTCACCCGGATACACTCGATAAACTGTTGGATCTCTTCTCAAATTA 1625 Query 1685 CACAAGATCAGTCACTTGGAATTTGTGATTAAAATCAG-ATTTTTCTTCATATACAC--A 1741 |||||||||||||||||||||||||||||||||| || |||||||||| ||||||| | Sbjct 1626 CACAAGATCAGTCACTTGGAATTTGTGATTAAAAG-AGTATTTTTCTTC-TATACACTCA 1683 Query 1742 GTATTCTTTGACCAATGTTCGACTCCCCCACCCACATGAATCAATATCACCTTTGAAGCT 1801 | ||||||||||||||||||| |||||||||||| ||||||||| ||||||||||||||| Sbjct 1684 G-ATTCTTTGACCAATGTTCGTCTCCCCCACCCATATGAATCAAAATCACCTTTGAAGCT 1742 Query 1802 GTAACACTGCAAGTCTAGAAGCTTAAGGAGGTATGAGATATTTTATCTCATAATATGCTT 1861 ||||||| ||||| ||||||||||||||||||| | | || |||| Sbjct 1743 GTAACACCACAAGTATAGAAGCTTAAGGAGGTAT-A----------CG-AT-----GCTT 1785 Query 1862 CATTTGGTTGGAAGGATACGTTGGTTTTATTCTTCTCTACTCTGttttttttttGGCTAT 1921 |||||||||||||||| |||||||||||||| || |||||||||||||||| |||||| Sbjct 1786 CATTTGGTTGGAAGGAGACGTTGGTTTTATTTTTATCTACTCTGTTTTTTT---GGCTAT 1842 Query 1922 ATATCTCATTGTTACTTTACTGTTGTTTTGTGTTCAGAATGTTGAACAAACAAAAGTTAT 1981 || ||||||||||| ||||||||||| ||||||||||||||| |||||||||| |||| Sbjct 1843 AT--CTCATTGTTACGTTACTGTTGTTGTGTGTTCAGAATGTTAAACAAACAAA--TTAT 1898 Query 1982 ACAGGTTTATAGAGTTTCTTTG 2003 |||||||||||||||||||||| Sbjct 1899 ACAGGTTTATAGAGTTTCTTTG 1920 > Ahg480818 jgi|Araly1|480818|fgenesh2_kg.3__3519__AT2G19160.1 Length=1991 Score = 989 bits (535), Expect = 0.0 Identities = 1002/1222 (82%), Gaps = 53/1222 (4%) Strand=Plus/Plus Query 487 GCAATAAAGGATTTGATGAGATGAAGGCAGTT-AAAAGATGGAGTATAGG-GAACTTAGC 544 |||||||||| ||| |||||||||||||| || || ||||| || |||| || | | Sbjct 421 GCAATAAAGGTTTTTATGAGATGAAGGCA-TTCAAGGGATGGCGTCTAGGCAAAATCA-A 478 Query 545 GGACATTCCCGTGTCTTTGCCTGGAGCTCGATACCGTGCTCCTCCTCCAGGAAGAAGACG 604 | | | | |||||||||||| ||||| | |||| ||||| || | |||| | Sbjct 479 TTATA-T-GC-AGTCTTTGCCTGGGGCTCGCCATCGTG---CTCCTACA--AGGAAG-CC 529 Query 605 AGTATGGATCATCATGGTGCTTTCACTGATCA-CCATGTTCT-TTATTATG-GCTTACAT 661 ||||||||||||| |||||||||||||| | | ||||| | | ||| | |||||||| Sbjct 530 AGTATGGATCATCGCAGTGCTTTCACTGAT-AGCAATGTT-TGTAATT-GGTGCTTACAT 586 Query 662 GTAT-CCTCATCATAGTAAACG-TGCTTGTTATATGATTTCATC-AAGAGGATGCAAGGC 718 || | |||||||| || ||| | ||||||||||||| ||||||| || ||| ||||||| Sbjct 587 GT-TCCCTCATCACAG-AAAAGCTGCTTGTTATATGTTTTCATCTAA-AGGGTGCAAGGG 643 Query 719 TTTAGCTGATTGGCTTCCACCTTCTCTGAGGGAATATTCAGATGATG-AGATTGCAGCTC 777 || |||||||||||||||| || |||||||||||||| ||||| | || ||||||||| Sbjct 644 GCTAACTGATTGGCTTCCACCATCACTGAGGGAATATTCGGATGACGAAG-TTGCAGCTC 702 Query 778 GTGTAGTCATT-AGAGAAATATTGAGTTCACCTCCTGTTATTAGAAAGAACTCTAAAATT 836 ||||||| ||| || ||||| ||||| || |||| |||||| | ||||| ||||||||| Sbjct 703 GTGTAGTGATTAAG-GAAATTTTGAGCTCCCCTCGTGTTATAAAAAAGAGTTCTAAAATT 761 Query 837 GC-TTTCATGTTTTTAACTCCTGGTACATTGCCTTTTGAGAGGCTTTGGGACAGATTTTT 895 || ||| ||||| |||||||| ||||||||||||||||| | ||| |||||| ||||| Sbjct 762 GCATTT-ATGTTCTTAACTCCGGGTACATTGCCTTTTGAAAAGCTATGGGACCTCTTTTT 820 Query 896 CCTGGGCCATGAAGGGAAATTCTCTGTTTATATACATGCATCAAAGGAAAGGCCAGTTCA 955 || ||| ||||| |||| ||||||||||||||| ||||| |||||||| | || ||||| Sbjct 821 CCAGGGTCATGAGGGGAGATTCTCTGTTTATATTCATGCGTCAAAGGATACTCCGGTTCA 880 Query 956 CTA-CAGTCGTTACTTTCTCAACCGCGAAATTCGTAGTGATGAGGTGGTGTGGGGAAGGA 1014 | | ||||||||||||| | ||||| || ||||| ||||| |||||||| ||||| || | Sbjct 881 C-ACCAGTCGTTACTTTGTTAACCGTGAGATTCGAAGTGACGAGGTGGTCTGGGGTAGAA 939 Query 1015 TATCAATGGTTGACGCAGAGAGACGGTTGTTAG-CTAATGCTCTTAGAGA-CACTTCTAA 1072 |||||||| ||||||| || ||||| ||||| | | |||||||||||||| | | || Sbjct 940 TATCAATGATTGACGCCGAAAGACGTTTGTT-GACCAATGCTCTTAGAGATC-CGGAAAA 997 Query 1073 CCAGCAATTTGTTTTACTCTCTGATAGTTGTGTACCACTTCGAAGTTTTGAATACATTTA 1132 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| || Sbjct 998 TCAGCAATTTGTTTTACTCTCTGATAGTTGTGTGCCACTTCGAAGTTTTGAATACATGTA 1057 Query 1133 CAATTACCTGATGCACAGCAATCTCAGCTATGTTGACTGCTTTGACGATCCAGGTCAACA 1192 ||| || |||||||||||||| |||| ||||||||||| ||||||||||| |||| ||| Sbjct 1058 CAACTATATGATGCACAGCAATGTCAGTTATGTTGACTGTTTTGACGATCCTGGTCCACA 1117 Query 1193 TGGAGCAGGCAGGCATATGAATCACATGTTGCCTGAAATCCCAAAG-AAGGATTTTCGAA 1251 |||| | |||||||||||| | ||||||||||| ||||| |||| | ||| ||||||||| Sbjct 1118 TGGAACGGGCAGGCATATGGACCACATGTTGCCGGAAATTCCAAGGGAAG-ATTTTCGAA 1176 Query 1252 AGGGTGCACAGTGGTTCACCATGAAGCGACAACACGCTGTAGCAACTATGGCAGACAGTC 1311 ||||||||||||||||| |||||| ||| || || ||||| | |||| ||||||| | || Sbjct 1177 AGGGTGCACAGTGGTTCTCCATGACGCGTCAGCATGCTGTGGTAACTGTGGCAGATAATC 1236 Query 1312 TTTACTACTCTAAATTCCGAGATTACTGCGGGCCAGGTATAGAGAACAACAAGAACTGCA 1371 ||||||||||||| ||||| || ||||| ||||||||| ||||| |||||||||||||| Sbjct 1237 TTTACTACTCTAAGTTCCGGGACTACTGTGGGCCAGGTGTAGAGGGCAACAAGAACTGCA 1296 Query 1372 TAGCTGATGAACACTATCTGCCAACATTCTTTCATATGCTTGATCCCGGTGGCATTGCTA 1431 | || ||||||||||||||||||||||||||| ||||||||||||| ||||||||||| Sbjct 1297 TCGCGGATGAACACTATCTGCCAACATTCTTTTATATGCTTGATCCTACTGGCATTGCTA 1356 Query 1432 ACTGGACTGTAACACAAGTTGATTGGTCTGAGAGAAAGTGGCATCCCA-AAACATATATG 1490 |||||||||| ||| | ||||||||||||||||||||||||||||| | ||| ||| ||| Sbjct 1357 ACTGGACTGTGACATATGTTGATTGGTCTGAGAGAAAGTGGCATCCAAGAAA-ATACATG 1415 Query 1491 CCTGAGGATATCACAC-ACGAGTTACTAAACAACCTCACGTCTACTGACACACTCGT-AC 1548 ||||| ||| ||||| | |||||| | || ||| ||||||| | |||| || | | || Sbjct 1416 CCTGAAGATGTCACAAGA-GAGTTAATTAAGAACATCACGTCCATTGACGCAGTT-TCAC 1473 Query 1549 ATGTCACAAGTGTTGGGATGGGTGA--AGAAAT-ATGGATGCCTTGTATGTGGAACGGAA 1605 || ||||||| | | ||| || || | | ||||| || ||| |||||||| |||| Sbjct 1474 GCGTAACAAGTGA-GAAAAGGG-GAGTAGTA-TCATGGACGCATTGCATGTGGAATGGAA 1530 Query 1606 TCCAAAGACCGTGTTA-CTTGTTTGGAAGGAAATTTCACCCGGATACACTCGATAAACTG 1664 || ||||||| || || || ||||||||||| ||||| | |||||||||||||||||| Sbjct 1531 TCAAAAGACCTTGCTATCTC-TTTGGAAGGAAGTTTCATGCTGATACACTCGATAAACTG 1589 Query 1665 TTGGATCTCTTCTCAAATTACA 1686 | || ||||||||||| |||| Sbjct 1590 ATCGAACTCTTCTCAAACTACA 1611 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 75304414365 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5