BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G30060.1
Length=2003
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491750 jgi|Araly1|491750|fgenesh2_kg.7__1183__AT4G30060.1 2654 0.0
Ahg480818 jgi|Araly1|480818|fgenesh2_kg.3__3519__AT2G19160.1 989 0.0
> Ahg491750 jgi|Araly1|491750|fgenesh2_kg.7__1183__AT4G30060.1
Length=1920
Score = 2654 bits (1437), Expect = 0.0
Identities = 1829/2002 (91%), Gaps = 92/2002 (5%)
Strand=Plus/Plus
Query 12 AAAAATTTGCTTCCTCTGTTTCGAACCCAATTGGGCATCTTCGTCGTCTTCTTCTTCAAC 71
|||||||||||||||||||||||||||||||| || | | | ||||| |||||| |
Sbjct 1 AAAAATTTGCTTCCTCTGTTTCGAACCCAATT-GG-----T-GGCATCTTCGTCTTCATC 53
Query 72 ATTCATCATCGTCATCAATTTCTCTGTAGCT-CTTTCACAAGTATTTCTTCAATTTCATA 130
|||||||||||||||||| | ||||||||| |||||||||| |||||||||||||||||
Sbjct 54 -TTCATCATCGTCATCAATATATCTGTAGCTCCTTTCACAAGCATTTCTTCAATTTCATA 112
Query 131 GCGAGAGAGAAATAAAAGGGAGAACACAGAGATCAGAGAGAAATTCAAAAACGAATCCGT 190
|| ||||| | ||| |||||||||||||||| | ||||||||||||
Sbjct 113 GC--GAGAG-------A--GAG-----AGAGATCAGAGAGAAAAAC-GAAACGAATCCGT 155
Query 191 GTGAGGACGTTTTAAAACTGCCAAAGAGACGTTTTACTTTTACATGCAC--ATAGAGACA 248
| ||| | | ||||||||| |||||||||| ||| ||||||||| ||| ||| |
Sbjct 156 GAGAGAAAATCTTAAAACTGACAAAGAGACG--TTA----TACATGCACATATATAGATA 209
Query 249 TACGTTTATTTTGTGTAGCTATAGCTC-TTAAGAGTTTGAATTTTCTCGAGATCTTTGAC 307
||||||| ||||||||||||||||||| || ||||||||||||||| |||||||||||||
Sbjct 210 TACGTTTGTTTTGTGTAGCTATAGCTCTTTGAGAGTTTGAATTTTCCCGAGATCTTTGAC 269
Query 308 CGGAGCGAAAACGACGAAGATATAGAAAATCTAGCGAAACGACGATTCGGACTTGGGAGA 367
||||| |||||||| |||||||||| ||||||||| ||| |||| | || || | |
Sbjct 270 CGGAGGGAAAACGAAGAAGATATAG-AAATCTAGC--AAC-ACGA--C-GA-TT-CG-G- 318
Query 368 CTCTCTTGCGTTGTGCTTGGATCTGGTTCCGTTGTAAATTTGAGGTTTTGATTGAC-CAG 426
||||||| ||||||||||||||||||||||||||||||| ||||| ||| | |||
Sbjct 319 --CTCTTGCCTTGTGCTTGGATCTGGTTCCGTTGTAAATTTCAGGTTCCAATT--CTCAG 374
Query 427 AGGAAGTTAGC-TTTGTTCATCTAGATTAGGCTATTATTGAGGTGTTGTTGTGGCTCTGA 485
| ||||||||| |||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 375 ACGAAGTTAGCTTTTGTTCACCTAGATTAGGC---TATTGAGGTGTTGTTGTGGCTCTG- 430
Query 486 AGCAATAAAGGATTTGATGAGATGAAGGCAGTTAAAAGATGGAGTATAGGGAACTTA-GC 544
| |||||||| ||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 431 CG-AATAAAGGTTTTGATGAGATGAAGGCAGTTAAAAGATGGAGTCTAGGGAACTTAGGC 489
Query 545 GGACATTCCCGTGTCTTTGCCTGGAGCTCGATACCGTGCTCCTCCTCCAGGAAGAAGACG 604
|| ||||||||||||||||||||||||||| ||||||||||| | || | |||| ||||
Sbjct 490 -GATATTCCCGTGTCTTTGCCTGGAGCTCGACACCGTGCTCCT-C-CC-GCAAGACGACG 545
Query 605 AGTATGGATCATCATGGTGCTTTCACTGATCACCATGTTCTTTATTATGGCTTACATGTA 664
|||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 546 AGTATGGATCATCATGGTGCTTTCACTGATCAGCATGTTCTTTATTACGGCTTACATGTA 605
Query 665 TCCTCATCATAGTAAACGTGCTTGTTATATGATTTCATCAAGAGGATGCAAGGCTTTAGC 724
||||||||||||||| | |||||||||||||||||||||||||||||||| ||||||||
Sbjct 606 CCCTCATCATAGTAAAAGGGCTTGTTATATGATTTCATCAAGAGGATGCAAAGCTTTAGC 665
Query 725 TGATTGGCTTCCACCTTCTCTGAGGGAATATTCAGATGATGAGATTGCAGCTCGTGTAGT 784
||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||
Sbjct 666 TGATTGGCTTCCACCTTCTCTGAGGGAATTTTCAGATGATGAGATTGCAGCTCGCGTAGT 725
Query 785 CATTAGAGAAATATTGAGTTCACCTCCTGTTATTAGAAAGAACTCTAAAATTGCTTTCAT 844
|||||||||||||||||||||||||||||| ||||||||||| ||||||||||| |||||
Sbjct 726 CATTAGAGAAATATTGAGTTCACCTCCTGTCATTAGAAAGAATTCTAAAATTGCATTCAT 785
Query 845 GTTTTTAACTCCTGGTACATTGCCTTTTGAGAGGCTTTGGGACAGATTTTTCCTGGGCCA 904
|||||||||||| |||||||| ||||| ||||||||||||||||||||||||| ||||||
Sbjct 786 GTTTTTAACTCCCGGTACATTACCTTTCGAGAGGCTTTGGGACAGATTTTTCCAGGGCCA 845
Query 905 TGAAGGGAAATTCTCTGTTTATATACATGCATCAAAGGAAAGGCCAGTTCACTACAGTCG 964
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 846 TGAAGGGAAATTCTCTGTTTATATACATGCATCAAAGGAAAGGCCAGTTCACTACAGTCG 905
Query 965 TTACTTTCTCAACCGCGAAATTCGTAGTGATGAGGTGGTGTGGGGAAGGATATCAATGGT 1024
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 906 TTACTTTGTCAACCGCGAAATTCGTAGTGATGAGGTGGTGTGGGGAAGGATATCAATGGT 965
Query 1025 TGACGCAGAGAGACGGTTGTTAGCTAATGCTCTTAGAGACACTTCTAACCAGCAATTTGT 1084
||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 966 TGACGCAGAGAGACGGTTGTTAGCTAATGCTCTCAGAGACACTTCAAACCAGCAATTTGT 1025
Query 1085 TTTACTCTCTGATAGTTGTGTACCACTTCGAAGTTTTGAATACATTTACAATTACCTGAT 1144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1026 TTTACTCTCTGATAGTTGTGTACCACTTCGAAGTTTTGAATACATTTACAATTACCTGAT 1085
Query 1145 GCACAGCAATCTCAGCTATGTTGACTGCTTTGACGATCCAGGTCAACATGGAGCAGGCAG 1204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1086 GCACAGCAATCTCAGCTATGTTGACTGCTTTGACGATCCAGGTCAACATGGAGCAGGCAG 1145
Query 1205 GCATATGAATCACATGTTGCCTGAAATCCCAAAGAAGGATTTTCGAAAGGGTGCACAGTG 1264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1146 GCATATGAATCACATGTTGCCTGAAATCCCAAAGAAGGATTTTCGAAAGGGTGCACAGTG 1205
Query 1265 GTTCACCATGAAGCGACAACACGCTGTAGCAACTATGGCAGACAGTCTTTACTACTCTAA 1324
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1206 GTTCACCATGAAGCGACAACACGCTGTAGCAACTATGGCAGATAGTCTTTACTACTCTAA 1265
Query 1325 ATTCCGAGATTACTGCGGGCCAGGTATAGAGAACAACAAGAACTGCATAGCTGATGAACA 1384
||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1266 ATTTCGGGATTACTGCGGGCCAGGTATAGAGAACAACAAGAACTGCATAGCTGATGAACA 1325
Query 1385 CTATCTGCCAACATTCTTTCATATGCTTGATCCCGGTGGCATTGCTAACTGGACTGTAAC 1444
||||||||||||||||||||||||||| ||||||||||| ||| ||||||||||||||||
Sbjct 1326 CTATCTGCCAACATTCTTTCATATGCTCGATCCCGGTGGTATTTCTAACTGGACTGTAAC 1385
Query 1445 ACAAGTTGATTGGTCTGAGAGAAAGTGGCATCCCAAAACATATATGCCTGAGGATATCAC 1504
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1386 ACAAGTTGATTGGTCTGAGAGAAAGTGGCATCCCAAAACGTATATGCCTGAGGATATCAC 1445
Query 1505 ACACGAGTTACTAAACAACCTCACGTCTACTGACACACTCGTACATGTCACAAGTGTTGG 1564
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1446 ACCCGAGTTACTAAACAACCTCACGTCTACTGACACACTCGTACATGTCACAAGTGTTGG 1505
Query 1565 GATGGGTGAAGAAATATGGATGCCTTGTATGTGGAACGGAATCCAAAGACCGTGTTACTT 1624
||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||
Sbjct 1506 GATGGGTGAAGAAATATGGATGCCTTGTATGTGGAACGGAATCAAAAGACCGTGCTACTT 1565
Query 1625 GTTTGGAAGGAAATTTCACCCGGATACACTCGATAAACTGTTGGATCTCTTCTCAAATTA 1684
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1566 GTTTGGAAGAAAATTTCACCCGGATACACTCGATAAACTGTTGGATCTCTTCTCAAATTA 1625
Query 1685 CACAAGATCAGTCACTTGGAATTTGTGATTAAAATCAG-ATTTTTCTTCATATACAC--A 1741
|||||||||||||||||||||||||||||||||| || |||||||||| ||||||| |
Sbjct 1626 CACAAGATCAGTCACTTGGAATTTGTGATTAAAAG-AGTATTTTTCTTC-TATACACTCA 1683
Query 1742 GTATTCTTTGACCAATGTTCGACTCCCCCACCCACATGAATCAATATCACCTTTGAAGCT 1801
| ||||||||||||||||||| |||||||||||| ||||||||| |||||||||||||||
Sbjct 1684 G-ATTCTTTGACCAATGTTCGTCTCCCCCACCCATATGAATCAAAATCACCTTTGAAGCT 1742
Query 1802 GTAACACTGCAAGTCTAGAAGCTTAAGGAGGTATGAGATATTTTATCTCATAATATGCTT 1861
||||||| ||||| ||||||||||||||||||| | | || ||||
Sbjct 1743 GTAACACCACAAGTATAGAAGCTTAAGGAGGTAT-A----------CG-AT-----GCTT 1785
Query 1862 CATTTGGTTGGAAGGATACGTTGGTTTTATTCTTCTCTACTCTGttttttttttGGCTAT 1921
|||||||||||||||| |||||||||||||| || |||||||||||||||| ||||||
Sbjct 1786 CATTTGGTTGGAAGGAGACGTTGGTTTTATTTTTATCTACTCTGTTTTTTT---GGCTAT 1842
Query 1922 ATATCTCATTGTTACTTTACTGTTGTTTTGTGTTCAGAATGTTGAACAAACAAAAGTTAT 1981
|| ||||||||||| ||||||||||| ||||||||||||||| |||||||||| ||||
Sbjct 1843 AT--CTCATTGTTACGTTACTGTTGTTGTGTGTTCAGAATGTTAAACAAACAAA--TTAT 1898
Query 1982 ACAGGTTTATAGAGTTTCTTTG 2003
||||||||||||||||||||||
Sbjct 1899 ACAGGTTTATAGAGTTTCTTTG 1920
> Ahg480818 jgi|Araly1|480818|fgenesh2_kg.3__3519__AT2G19160.1
Length=1991
Score = 989 bits (535), Expect = 0.0
Identities = 1002/1222 (82%), Gaps = 53/1222 (4%)
Strand=Plus/Plus
Query 487 GCAATAAAGGATTTGATGAGATGAAGGCAGTT-AAAAGATGGAGTATAGG-GAACTTAGC 544
|||||||||| ||| |||||||||||||| || || ||||| || |||| || | |
Sbjct 421 GCAATAAAGGTTTTTATGAGATGAAGGCA-TTCAAGGGATGGCGTCTAGGCAAAATCA-A 478
Query 545 GGACATTCCCGTGTCTTTGCCTGGAGCTCGATACCGTGCTCCTCCTCCAGGAAGAAGACG 604
| | | | |||||||||||| ||||| | |||| ||||| || | |||| |
Sbjct 479 TTATA-T-GC-AGTCTTTGCCTGGGGCTCGCCATCGTG---CTCCTACA--AGGAAG-CC 529
Query 605 AGTATGGATCATCATGGTGCTTTCACTGATCA-CCATGTTCT-TTATTATG-GCTTACAT 661
||||||||||||| |||||||||||||| | | ||||| | | ||| | ||||||||
Sbjct 530 AGTATGGATCATCGCAGTGCTTTCACTGAT-AGCAATGTT-TGTAATT-GGTGCTTACAT 586
Query 662 GTAT-CCTCATCATAGTAAACG-TGCTTGTTATATGATTTCATC-AAGAGGATGCAAGGC 718
|| | |||||||| || ||| | ||||||||||||| ||||||| || ||| |||||||
Sbjct 587 GT-TCCCTCATCACAG-AAAAGCTGCTTGTTATATGTTTTCATCTAA-AGGGTGCAAGGG 643
Query 719 TTTAGCTGATTGGCTTCCACCTTCTCTGAGGGAATATTCAGATGATG-AGATTGCAGCTC 777
|| |||||||||||||||| || |||||||||||||| ||||| | || |||||||||
Sbjct 644 GCTAACTGATTGGCTTCCACCATCACTGAGGGAATATTCGGATGACGAAG-TTGCAGCTC 702
Query 778 GTGTAGTCATT-AGAGAAATATTGAGTTCACCTCCTGTTATTAGAAAGAACTCTAAAATT 836
||||||| ||| || ||||| ||||| || |||| |||||| | ||||| |||||||||
Sbjct 703 GTGTAGTGATTAAG-GAAATTTTGAGCTCCCCTCGTGTTATAAAAAAGAGTTCTAAAATT 761
Query 837 GC-TTTCATGTTTTTAACTCCTGGTACATTGCCTTTTGAGAGGCTTTGGGACAGATTTTT 895
|| ||| ||||| |||||||| ||||||||||||||||| | ||| |||||| |||||
Sbjct 762 GCATTT-ATGTTCTTAACTCCGGGTACATTGCCTTTTGAAAAGCTATGGGACCTCTTTTT 820
Query 896 CCTGGGCCATGAAGGGAAATTCTCTGTTTATATACATGCATCAAAGGAAAGGCCAGTTCA 955
|| ||| ||||| |||| ||||||||||||||| ||||| |||||||| | || |||||
Sbjct 821 CCAGGGTCATGAGGGGAGATTCTCTGTTTATATTCATGCGTCAAAGGATACTCCGGTTCA 880
Query 956 CTA-CAGTCGTTACTTTCTCAACCGCGAAATTCGTAGTGATGAGGTGGTGTGGGGAAGGA 1014
| | ||||||||||||| | ||||| || ||||| ||||| |||||||| ||||| || |
Sbjct 881 C-ACCAGTCGTTACTTTGTTAACCGTGAGATTCGAAGTGACGAGGTGGTCTGGGGTAGAA 939
Query 1015 TATCAATGGTTGACGCAGAGAGACGGTTGTTAG-CTAATGCTCTTAGAGA-CACTTCTAA 1072
|||||||| ||||||| || ||||| ||||| | | |||||||||||||| | | ||
Sbjct 940 TATCAATGATTGACGCCGAAAGACGTTTGTT-GACCAATGCTCTTAGAGATC-CGGAAAA 997
Query 1073 CCAGCAATTTGTTTTACTCTCTGATAGTTGTGTACCACTTCGAAGTTTTGAATACATTTA 1132
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 998 TCAGCAATTTGTTTTACTCTCTGATAGTTGTGTGCCACTTCGAAGTTTTGAATACATGTA 1057
Query 1133 CAATTACCTGATGCACAGCAATCTCAGCTATGTTGACTGCTTTGACGATCCAGGTCAACA 1192
||| || |||||||||||||| |||| ||||||||||| ||||||||||| |||| |||
Sbjct 1058 CAACTATATGATGCACAGCAATGTCAGTTATGTTGACTGTTTTGACGATCCTGGTCCACA 1117
Query 1193 TGGAGCAGGCAGGCATATGAATCACATGTTGCCTGAAATCCCAAAG-AAGGATTTTCGAA 1251
|||| | |||||||||||| | ||||||||||| ||||| |||| | ||| |||||||||
Sbjct 1118 TGGAACGGGCAGGCATATGGACCACATGTTGCCGGAAATTCCAAGGGAAG-ATTTTCGAA 1176
Query 1252 AGGGTGCACAGTGGTTCACCATGAAGCGACAACACGCTGTAGCAACTATGGCAGACAGTC 1311
||||||||||||||||| |||||| ||| || || ||||| | |||| ||||||| | ||
Sbjct 1177 AGGGTGCACAGTGGTTCTCCATGACGCGTCAGCATGCTGTGGTAACTGTGGCAGATAATC 1236
Query 1312 TTTACTACTCTAAATTCCGAGATTACTGCGGGCCAGGTATAGAGAACAACAAGAACTGCA 1371
||||||||||||| ||||| || ||||| ||||||||| ||||| ||||||||||||||
Sbjct 1237 TTTACTACTCTAAGTTCCGGGACTACTGTGGGCCAGGTGTAGAGGGCAACAAGAACTGCA 1296
Query 1372 TAGCTGATGAACACTATCTGCCAACATTCTTTCATATGCTTGATCCCGGTGGCATTGCTA 1431
| || ||||||||||||||||||||||||||| ||||||||||||| |||||||||||
Sbjct 1297 TCGCGGATGAACACTATCTGCCAACATTCTTTTATATGCTTGATCCTACTGGCATTGCTA 1356
Query 1432 ACTGGACTGTAACACAAGTTGATTGGTCTGAGAGAAAGTGGCATCCCA-AAACATATATG 1490
|||||||||| ||| | ||||||||||||||||||||||||||||| | ||| ||| |||
Sbjct 1357 ACTGGACTGTGACATATGTTGATTGGTCTGAGAGAAAGTGGCATCCAAGAAA-ATACATG 1415
Query 1491 CCTGAGGATATCACAC-ACGAGTTACTAAACAACCTCACGTCTACTGACACACTCGT-AC 1548
||||| ||| ||||| | |||||| | || ||| ||||||| | |||| || | | ||
Sbjct 1416 CCTGAAGATGTCACAAGA-GAGTTAATTAAGAACATCACGTCCATTGACGCAGTT-TCAC 1473
Query 1549 ATGTCACAAGTGTTGGGATGGGTGA--AGAAAT-ATGGATGCCTTGTATGTGGAACGGAA 1605
|| ||||||| | | ||| || || | | ||||| || ||| |||||||| ||||
Sbjct 1474 GCGTAACAAGTGA-GAAAAGGG-GAGTAGTA-TCATGGACGCATTGCATGTGGAATGGAA 1530
Query 1606 TCCAAAGACCGTGTTA-CTTGTTTGGAAGGAAATTTCACCCGGATACACTCGATAAACTG 1664
|| ||||||| || || || ||||||||||| ||||| | ||||||||||||||||||
Sbjct 1531 TCAAAAGACCTTGCTATCTC-TTTGGAAGGAAGTTTCATGCTGATACACTCGATAAACTG 1589
Query 1665 TTGGATCTCTTCTCAAATTACA 1686
| || ||||||||||| ||||
Sbjct 1590 ATCGAACTCTTCTCAAACTACA 1611
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 75304414365
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5