BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G30064.1

Length=237
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg889117 jgi|Araly1|889117|Al_scaffold_0007_1103                    318    9e-87
  Ahg887514 jgi|Araly1|887514|Al_scaffold_0146_1                       150    4e-36


> Ahg889117 jgi|Araly1|889117|Al_scaffold_0007_1103
Length=240

 Score =  318 bits (172),  Expect = 9e-87
 Identities = 214/234 (91%), Gaps = 4/234 (2%)
 Strand=Plus/Plus

Query  1    ATGGCCAAGACAGCTTCTTCACTTGTTCTCCCCATCATCTTCCTTGTAATGTTTGCATTA  60
            ||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct  1    ATGGCAAAGACAGCTTCTTCACTTGTTCTCCCCATCATCTTCCTTGTTATGTTTGCTTTA  60

Query  61   GTTGAGCAGAATATGGGATGCATGGCAGTTCTTGGCTCGTGTGGTGTGATTACCGACTGT  120
            |||| |||||||||||||||||||||||||||||||||||||||||| ||||  ||||| 
Sbjct  61   GTTGCGCAGAATATGGGATGCATGGCAGTTCTTGGCTCGTGTGGTGTTATTAGTGACTGC  120

Query  121  AGTGGGGAATGCATTTCTAGATTTGGACCACAA-GCACGTGGCTACTGTGACCGAGATGG  179
            |||  ||  ||||  |||| ||||||| || || ||||||||||||||||||||||||||
Sbjct  121  AGTATGGCTTGCAAGTCTAAATTTGGATCA-AACGCACGTGGCTACTGTGACCGAGATGG  179

Query  180  TGGTTCTGGAACATGTGTTTGCGTTTATCCTTGTCCGGCTGATAAG-CCACATA  232
            |||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct  180  TGGTTCTGGAACATGTGTTTGCGTTTATCCTTGTCCGGCTGATAAGTCC-CATA  232


> Ahg887514 jgi|Araly1|887514|Al_scaffold_0146_1
Length=198

 Score =  150 bits (81),  Expect = 4e-36
 Identities = 163/201 (81%), Gaps = 11/201 (5%)
 Strand=Plus/Plus

Query  44   TTGTAATGTTTGCATTAGTTGAGCAGAATATGGGATGCATGGCAGTTCTTGGCTCGTGTG  103
            |||| ||||| || |||||||| || |||||||||||||||||||||||||||||||| |
Sbjct  2    TTGTGATGTTAGCCTTAGTTGAACAAAATATGGGATGCATGGCAGTTCTTGGCTCGTGCG  61

Query  104  GTGTGATTACCGACTGTAGTGGGGA-ATGCATTTCTA-GATTTGGACCACAAGC-ACGTG  160
            |||| ||||| ||||| |||||| | |||||   ||| | ||||||| | | || | |||
Sbjct  62   GTGTTATTACAGACTGCAGTGGG-ACATGCAAGACTAAG-TTTGGACAAGATGCGA-GTG  118

Query  161  GCTACTGTGACCGAGATGGTGGT-TCTGGAACATGTGTTTGCGTTTATCCTTGTCCGGC-  218
            || | |||||||| || |||||| | ||||||||||||||| | |||| | |||||  | 
Sbjct  119  GCGATTGTGACCGCGACGGTGGTGT-TGGAACATGTGTTTGTGGTTATTCGTGTCCATCA  177

Query  219  --TGATAAGCCACATATGTGA  237
              | ||||||| |||||||||
Sbjct  178  CCTCATAAGCCCCATATGTGA  198



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 8172287854


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5