BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G30067.1

Length=237
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg944991 jgi|Araly1|944991|scaffold_701220.1                        276    6e-74


> Ahg944991 jgi|Araly1|944991|scaffold_701220.1
Length=205

 Score =  276 bits (149),  Expect = 6e-74
 Identities = 169/179 (94%), Gaps = 0/179 (0%)
 Strand=Plus/Plus

Query  59   TAGTTGAGCCAAATATGGGGTGCATTCAAATTATTGGCAGATGCATTAAGATTCCAGACT  118
            ||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||
Sbjct  7    TAGTTGAGCCAAATATGGGATGCATTCAAATTATTGGCAAATGCATTAAGATTCCAGACT  66

Query  119  GCAGTGCGTCATGTAGGAAATTCCTTGGGCCACATGCAAGTGGCTACTGTGACAACGATG  178
            | ||||||||||| |||||||||||||||||||| |||||||||| ||||||||||||||
Sbjct  67   GTAGTGCGTCATGCAGGAAATTCCTTGGGCCACAGGCAAGTGGCTTCTGTGACAACGATG  126

Query  179  GTGCTGGTGGAACATGTATTTGTACTTACCCCTGTCAGACTAAGGAAATACATATGTGA  237
            ||||||||||||||||||||||||||||||| |||| |||||||||||  |||||||||
Sbjct  127  GTGCTGGTGGAACATGTATTTGTACTTACCCATGTCCGACTAAGGAAACGCATATGTGA  185



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 8172287854


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5