BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G30070.1

Length=565
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg491747 jgi|Araly1|491747|fgenesh2_kg.7__1180__AT4G30070.1         514    3e-145


> Ahg491747 jgi|Araly1|491747|fgenesh2_kg.7__1180__AT4G30070.1
Length=405

 Score =  514 bits (278),  Expect = 3e-145
 Identities = 371/414 (90%), Gaps = 14/414 (3%)
 Strand=Plus/Plus

Query  56   AAAATATGGAGACCG-TGACATCACTTGTCTTCATTGTTAACTTACTTATCATTTTTACA  114
            ||||||||||||  | |||||||| |||||||||||||||||||||||||||||||||| 
Sbjct  1    AAAATATGGAGA-GGATGACATCAATTGTCTTCATTGTTAACTTACTTATCATTTTTACG  59

Query  115  TCAGTTGTGAATCAGGCTAGAGGAGATACATGTATAGATGGATTAGG-CTATTGCAACAA  173
            ||||||||||||||| |||||| |||||| |||| |||||||||||| || |||||||  
Sbjct  60   TCAGTTGTGAATCAGACTAGAGCAGATACGTGTACAGATGGATTAGGTCT-TTGCAACGG  118

Query  174  TTGTGACGAGAGATGCAAGGCCAAGCACGGACCATCGAGCGAAAGCAGCTGTGATCGTAG  233
             || || |||||||||||||||||||||||||||||||||||||||| ||||||||| ||
Sbjct  119  CTGCGATGAGAGATGCAAGGCCAAGCACGGACCATCGAGCGAAAGCAACTGTGATCGCAG  178

Query  234  TGTTGGGGT-GCCGCTGTGCAAATGCTACTACGAATGTGAATCTCCGCCATCACCACCCG  292
            | ||||||| |  ||| |||   ||||||||| |||||| ||| || | |||||||||||
Sbjct  179  TATTGGGGTAGG-GCTATGCGTGTGCTACTACCAATGTGGATC-CC-C-ATCACCACCCG  234

Query  293  CGCCGCCGAAGAAATGCGACGGTGGGGCTGGTATATGTAGTCAAAGATGTCAAGGA-CAA  351
             || |   ||||||||| |||||||||||||||||||||||||||||||||||||| || 
Sbjct  235  TGCAG---AAGAAATGCAACGGTGGGGCTGGTATATGTAGTCAAAGATGTCAAGGAACA-  290

Query  352  TGTTGTGATATGAACTGTGCACAAAAGTATATTGGTGGACATGGATTTTGTAATACTCTT  411
            ||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||
Sbjct  291  TGTTGTGATATGAACTGTGCACAAAAGTATAATGGTGGACATGGATTTTGTAACACTCTT  350

Query  412  GGTACGTTTAGTTTCTGCCAATGCGAATATCCTTGTTAAAGTCGGTTGACAAAA  465
            ||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct  351  GGTACATTTAGTTTGTGCCAATGCGAATATCCTTGTTAAAGTCGGTTGACAAAA  404



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 20642173649


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5