BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G30074.1

Length=527
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg889115 jgi|Araly1|889115|Al_scaffold_0007_1101                    514    3e-145


> Ahg889115 jgi|Araly1|889115|Al_scaffold_0007_1101
Length=360

 Score =  514 bits (278),  Expect = 3e-145
 Identities = 334/361 (93%), Gaps = 4/361 (1%)
 Strand=Plus/Plus

Query  62   TGGTTTTCATCATCTTCTCTATCATGCTTGCTTCCGTTGAGAATAAGGTAAACGCAAATA  121
            |||||| ||||||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct  2    TGGTTTCCATCATCTTCTCTATCATGCTTGCTTCCGTTGAAAATAAGGTAAAAGCAAATA  61

Query  122  CATGCATC-GAGGGTATTGGTAATTGTCAGCAATGTGACGTGAGATGCAAGGCCAGA-CA  179
            |||||| | |||||| |||||||||||||||||||||| | |||||||||||||| | ||
Sbjct  62   CATGCA-CAGAGGGTCTTGGTAATTGTCAGCAATGTGATGAGAGATGCAAGGCCA-ACCA  119

Query  180  CGGACCAGCGGCCAAAGGCGCTTGTGACTCCAAATTTCAACTATGCACGTGCAATTACCC  239
            |||||||||||||||||||| ||| ||| |||| |||||||||||||||||| |||||||
Sbjct  120  CGGACCAGCGGCCAAAGGCGGTTGCGACCCCAAGTTTCAACTATGCACGTGCTATTACCC  179

Query  240  TTGCGGACAGGGTCCATCGCCTCCGCAGCCCAAAAAATGTTATGGTGGAGCTGGCATTTG  299
             ||||| |||||||||||||||||||||||||||||||| |||||||| |||||| | ||
Sbjct  180  GTGCGGTCAGGGTCCATCGCCTCCGCAGCCCAAAAAATGCTATGGTGGGGCTGGCGTATG  239

Query  300  CAGCGATAGATGTGGGGCTCAGTGTTGCAACCAAAACTGTGCGCAAAAGTATAATCAAGG  359
            |||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct  240  CAGCGATAAATGTGGGCCTCAGTGTTGCAACCAAAACTGTGCGCAAAAGTATAATCAAGG  299

Query  360  AAGTGGATTTTGTGACAGCATTGGCAATACTTCTTTGTGTAAATGCCAATATAATTGCTA  419
            || |||||||||||||||||||||| |||||| |||||| ||||||||||||||||||||
Sbjct  300  AACTGGATTTTGTGACAGCATTGGCCATACTTATTTGTGCAAATGCCAATATAATTGCTA  359

Query  420  A  420
            |
Sbjct  360  A  360



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19192261267


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5