BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G30080.1
Length=2360
Score E
Sequences producing significant alignments: (Bits) Value
Ahg944988 jgi|Araly1|944988|scaffold_701217.1 3260 0.0
> Ahg944988 jgi|Araly1|944988|scaffold_701217.1
Length=2054
Score = 3260 bits (1765), Expect = 0.0
Identities = 1958/2054 (95%), Gaps = 2/2054 (0%)
Strand=Plus/Plus
Query 160 CAAAAACGGTCACAAAAAA-TATGATAAATGTGATGAATCCAATGAAAGGTGGAACAGAG 218
||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||
Sbjct 1 CAAAAACGGTCACAAAAAAGTATGATAAATGTTATGAATCCAATGAAAGGTGGAACAGAG 60
Query 219 AAAGGTTTAGATCCTCAGCTATGGCATGCATGTGCTGGTGGTATGGTTCGTATGCCTCCT 278
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 AAAGGTTTAGATCCTCAACTATGGCATGCATGTGCTGGTGGTATGGTTCGTATGCCTCCT 120
Query 279 ATGAACTCTAAAGTCTTTTACTTTCCTCAAGGTCACGCCGAAAACGCTTACGATTGTGTC 338
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 ATGAACTCTAAAGTCTTTTACTTTCCTCAAGGTCACGCCGAAAACGCTTACGATTGTGTC 180
Query 339 GATTTCGGTAATCTCCCTATTCCTCCCATGGTTTTGTGTCGTGTTTTAGCCATTAAGTAT 398
|||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 181 GATTTCGGTAATCTTCCTATTCATCCCATGGTTTTGTGTCGTGTTTTAGCCATTAAGTAT 240
Query 399 ATGGCTGATGCTGAATCTGACGAGGTTTTCGCTAAACTGAGATTGATTCCTTTGAAAGAT 458
|||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 241 ATGGCTGATGCTGAATCTGACGAGGTTTTCGCCAAACTGAGGTTGATTCCTTTGAAAGAT 300
Query 459 GATGAGTATGTTGATCACGAGTATGGTGATGGTGAAGATAGTAACGGTTTCGAGAGTAAT 518
||||||||||||||||| |||||||| ||||| ||||||||||| |||||||||||||||
Sbjct 301 GATGAGTATGTTGATCATGAGTATGGAGATGGCGAAGATAGTAATGGTTTCGAGAGTAAT 360
Query 519 AGTGAGAAAACGCCTTCGTTTGCTAAGACTTTGACTCAGTCTGATGCTAATAACGGTGGG 578
|||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||
Sbjct 361 AGTGAGAAAACGCCTTCGTTTGCTAAGACTCTGACTCAGTCTGATGCTAATAATGGTGGG 420
Query 579 GGTTTCTCTGTTCCTCGTTATTGCGCTGAGACGATTTTCCCGAGGTTGGATTATAACGCC 638
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 421 GGATTCTCTGTTCCTCGTTATTGCGCTGAGACGATTTTCCCGAGGTTGGATTATAATGCC 480
Query 639 GAGCCGCCGGTTCAGACCATTCTTGCTAAGGATGTTCATGGTGATGTTTGGAAGTTCAGA 698
||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 481 GAGCCACCGGTTCAGACGATTCTTGCTAAGGATGTTCATGGTGATGTTTGGAAGTTTAGA 540
Query 699 CATATTTATAGAGGGACGCCTCGGCGTCACCTTCTTACAACCGGATGGAGTAATTTTGTA 758
||||||||||||||||| ||||| ||||| ||||| || ||||| ||||||||||| ||
Sbjct 541 CATATTTATAGAGGGACACCTCGTCGTCATCTTCTCACGACCGGGTGGAGTAATTTCGTG 600
Query 759 AACCAGAAGAAGCTTGTGGCGGGAGATTCGATTGTCTTCATGAGAGCGGAGAATGGAGAT 818
|||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 601 AACCAGAAGAAGCTTGTGGCGGGAGATTCGATTGTCTTTATGAGAGCTGAGAATGGAGAT 660
Query 819 CTTTGTGTAGGTATTAGGAGGGCTAAGAGAGGAGGGATAGGTAATGGACCCGAATATTCA 878
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 661 CTTTGTGTAGGTATTAGGAGGGCTAAGAGAGGAGGGATAGGTAATGGACCCGAATATTCA 720
Query 879 GCGGGTTGGAATCCGATCGGTGGAAGTTGCGGCTACTCTTCTCTGTTAAGGGAAGATGAA 938
||||||||||||||||| || ||||| || || |||||||||||||||| ||||||||||
Sbjct 721 GCGGGTTGGAATCCGATTGGAGGAAGCTGTGGATACTCTTCTCTGTTAAAGGAAGATGAA 780
Query 939 AGCAATAGTTTGAGGAGAAGTAATTGTTCCCTTGCGGATAGGAAGGGGAAAGTGACGGCT 998
||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 781 AGCAATAGTTTGAGGAGAAGTAATTGTTCGCTTGCGGATAGGAAGGGAAAAGTGACGGCT 840
Query 999 GAATCTGTTATAGAAGCAGCCACTCTTGCTATTAGCGGAAGACCGTTTGAGGTTGTGTAC 1058
||||| ||||||||||| ||| |||| ||||| |||||||||||||||||||||||||||
Sbjct 841 GAATCAGTTATAGAAGCCGCCGCTCTCGCTATCAGCGGAAGACCGTTTGAGGTTGTGTAC 900
Query 1059 TATCCGAGAGCTAGCACTTCAGAGTTTTGTGTCAAGGCATTAGATGCTCGAGCTGCCATG 1118
|||||||| ||||||||||| |||||||||||||||||| |||||||||||||||| |||
Sbjct 901 TATCCGAGGGCTAGCACTTCGGAGTTTTGTGTCAAGGCAGTAGATGCTCGAGCTGCGATG 960
Query 1119 CGGATTCCGTGGTGCTCAGGTATGAGGTTTAAGATGGCTTTTGAGACAGAGGATTCGTCT 1178
||||||||||||||||| |||||||||||||| ||||||||||||||||| |||||||||
Sbjct 961 CGGATTCCGTGGTGCTCTGGTATGAGGTTTAAAATGGCTTTTGAGACAGAAGATTCGTCT 1020
Query 1179 CGGATAAGTTGGTTTATGGGGACTGTTTCAGCTGTTAATGTCTCTGATCCTATCCGTTGG 1238
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1021 CGGATAAGCTGGTTTATGGGGACTGTTTCAGCTGTTAATGTCTCTGATCCTATCCGTTGG 1080
Query 1239 CCTAACTCTCCTTGGCGGCTTCTACAGGTGGCGTGGGATGAGCCAGATTTACTCCAAAAC 1298
||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1081 CCTAATTCTCCTTGGCGGCTTCTACAGGTGGCCTGGGATGAGCCAGATTTACTCCAAAAC 1140
Query 1299 GTGAAGCGAGTTAACCCGTGGTTGGTGGAATTGGTATCAAACGTACATCCGATCCCGCTT 1358
|||||||| ||||||||||||||||| ||||||||||| |||||||||||||||||||||
Sbjct 1141 GTGAAGCGGGTTAACCCGTGGTTGGTCGAATTGGTATCTAACGTACATCCGATCCCGCTT 1200
Query 1359 ACTTCGTTTTCGCCACCGAGGAAAAAGATGCGGCTACCTCAGCATCCAGATTACAACAAT 1418
|||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1201 ACTTCGTTTTCGCCCCCGAGGAAAAAGATGCGGCTACCTCAGCATCCGGATTACAACAAT 1260
Query 1419 CTGATCAATTCGATTCCAGTACCTTCATTCCCAAGCAATCCCCTTATTAGATCAAGCCCG 1478
||| |||||||||| ||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 1261 CTGCTCAATTCGATCCCAGTACCTTCATTCCCAAGCAATCCCCTCATCAGATCAAGCCCG 1320
Query 1479 TTAAGCTCTGTTCTGGACAATGTTCCCGTGGGTTTACAGGGAGCCAGGCATAATGCTCAT 1538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1321 TTAAGCTCTGTTCTGGACAATGTTCCCGTGGGTTTACAGGGAGCCAGGCATAATGCTCAT 1380
Query 1539 CAGTACTACGGGTTATCATCTTCGGATCTTCACCATTACTACTTGAATAGACCAcctcct 1598
||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 1381 CAGTACTACGGGTTATCATCTTCGGATCTCCACCATTACTACTTGAATAGACCTCCTCCT 1440
Query 1599 cctcctcctccatcctctctccaactttctccttctctcggtctccGAAACATCGATACC 1658
|||||||||||||| ||||||| || ||||||| ||||||||||||||||||||||||||
Sbjct 1441 CCTCCTCCTCCATCATCTCTCCCACGTTCTCCTCCTCTCGGTCTCCGAAACATCGATACC 1500
Query 1659 AAAAACGAAAAAGGATTTTGCTTTTTGACAATGGGAACAACACCATGCAATGATACCAAA 1718
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1501 AAAAACGAAAAAAGATTTTGCTTTTTGACAATGGGAACAACACCATGCAATGATACTGAG 1560
Query 1719 TCTAAAAAGTCCCATATTGTATTGTTCGGCAAGCTTATACTACCCGAGGAACAGCTATCA 1778
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1561 TCTAAAAAGTCCCACATTGTATTGTTCGGCAAGCTTATACTACCCGAGGAACAGCTATCA 1620
Query 1779 GAAAAAGGCTCAACGGATACCGCAAACATAGAGAAAACGCAGATTTCATCAGGCGGGTCG 1838
|||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1621 GAAAAAGGGTCAACGGATACCGCAAACATAGAGAAAACGCAGATTTCATCAGGGGGGTCA 1680
Query 1839 AACCAAAACGGCGTTGCGGGAAGGGAGTTTTCTTCGTCAGATGAAGGATCACCTTGCTCT 1898
||||| ||||| ||||| |||||||| || ||||||||||| |||||||||||||||||
Sbjct 1681 AACCAGAACGGTGTTGCAGGAAGGGAATTATCTTCGTCAGACGAAGGATCACCTTGCTCC 1740
Query 1899 AAGAAAGTTCATGATGCATCAGGTTTGGAAACAGGGCATTGTAAAGTGTTTATGGAGTCA 1958
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1741 AACAAAGTTCATGATGCATCAGGTTTGGAAACAGGGCATTGTAAAGTGTTTATGGAGTCA 1800
Query 1959 GACGATGTAGGTCGAACCTTAGACCTATCGGTTCTTGGTTCATACGAAGAATTGAGTCGG 2018
|| ||||| |||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 1801 GATGATGTGGGTCGAACCTTAGACCTATCGGTTCTTGGTTCTTACGATGAATTGAGTCGA 1860
Query 2019 AAACTCTCTGACATGTTTGGAATCAAAAAGTCTGAGATGTTAAGCTCTGTTCTCTATAGG 2078
||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 1861 AAACTCTCTGACATGTTTGGAATCAAAAATTCTGAGATGTTGAGCTCTGTTCTCTATAGG 1920
Query 2079 GATGCATCAGGAGCCATCAAATACGCAGGAAACGAACCTTTCAGTGAGTTCTTGAAGACA 2138
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1921 GATGCATCAGGAGCCATCAAATACGCAGGAAACGAACCTTTCAGTGAGTTCTTGAAGACA 1980
Query 2139 GCTCGAAGATTGACAATTCTGACGGAACAAGGAAGTGAGAGCGTTGTAGTATAACTT-GG 2197
||||| |||||||| ||||||||||||||||| || |||||||||||| ||||| || ||
Sbjct 1981 GCTCGGAGATTGACGATTCTGACGGAACAAGGCAGCGAGAGCGTTGTAATATAAATTTGG 2040
Query 2198 CAGAGTGTTTTGTT 2211
||||||||||||||
Sbjct 2041 CAGAGTGTTTTGTT 2054
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 88902631830
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5