BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G30090.1
Length=1498
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491744 jgi|Araly1|491744|fgenesh2_kg.7__1177__AT4G30090.1 848 0.0
> Ahg491744 jgi|Araly1|491744|fgenesh2_kg.7__1177__AT4G30090.1
Length=1203
Score = 848 bits (459), Expect = 0.0
Identities = 577/631 (91%), Gaps = 19/631 (3%)
Strand=Plus/Plus
Query 799 ATCAGAACACATACACATCCGTACACGACCCGGATTATGACCTTAACGAAGCCACACTTG 858
||||||| ||||||||| || ||||||||| |||||||||||||||||||||||||||||
Sbjct 568 ATCAGAATACATACACACCCATACACGACCAGGATTATGACCTTAACGAAGCCACACTTG 627
Query 859 GAGAGAGTACAAGTTGCCTTAGAGCCATATACTGAAAACGTAAGACATGGCTTTCAGAAG 918
|||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 628 GAGAGAGTACTAGTTGCCTTAGAGCCATATACTGAAAACGTAAGACATGGCTTTAAGAAG 687
Query 919 TTGGTTAACTCAACCAAAATCTACCATCAACAGGCTCAAGAAATGCTGAAGAACAATGAG 978
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 688 TTGGTTAACTCAACGAAAATCTACCATCAACAGGCTCAAGAAATGCTGAAGAACAATGAG 747
Query 979 ATCACCAAACCGGTTGCTACCATGGACTTAGCTTGGGTTGGGGCCACAGCTTTAATTGGA 1038
||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 748 ATCACGAAACCGATTGCTACCATGGACTTAGCTTGGGTTGGGGCCACAGCTTTAATTGGC 807
Query 1039 TTCCCTCTTATATTCATCATCAAATTGCTTTCTGCAGTCTCCAATCCTAAGGGGAAGAAG 1098
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 808 TTCCCTCTTATATTCATCATCAAATTGCTTTCTGCAGTCTCCAATCCTAAGAGGAAGAAG 867
Query 1099 AGACACAACCATAAAAAAGAACCAACCACCGGGTACCGCAGAGCCAAACGCCGACATCCT 1158
||| ||| |||||||||||||||||||| ||||| ||||||||||||||||| ||||||
Sbjct 868 AGATACAGCCATAAAAAAGAACCAACCATTGGGTATCGCAGAGCCAAACGCCGGCATCCT 927
Query 1159 CACCAATGATACAATAGGACTATAACTTGAAGAG-ATCAAAAAGGTGGTTTGTATATACC 1217
||||||||| ||||||| | |||||||||| ||| | |||||||||||||||||||||||
Sbjct 928 CACCAATGAAACAATAGAATTATAACTTGAGGAGCA-CAAAAAGGTGGTTTGTATATACC 986
Query 1218 TTTCTGGTTTCTGAGACTTATAATAGTTAAATATCTATTGGCTGAAGAAGTTGAAGCAGA 1277
|||||||||||| |||||||||| | |||||| | | ||||||||||||||||| |||||
Sbjct 987 TTTCTGGTTTCTCAGACTTATAACAATTAAAT-TGTTTTGGCTGAAGAAGTTGA-GCAGA 1044
Query 1278 GGT-GTTCTACAAAACTATAGGTCTCTCTTGACTCTCTGTAGTGACAAAATCTTAGAACA 1336
|| ||||||||||||| || | ||||||||||| |||||||||||||| |||
Sbjct 1045 GGAAGTTCTACAAAACT------CT-T---GACTCTCTGTATTGACAAAATCTTAGCACA 1094
Query 1337 ATCTTTTTCAGTTTTCATAGTTTATGGTTTTTTA-TAAAGTAGAGAAGAGAA-GAAAAGA 1394
||||||| ||||||||||||||||||||||| || || || |||||||| || ||||| |
Sbjct 1095 ATCTTTT-CAGTTTTCATAGTTTATGGTTTTATAGTAGAGAAGAGAAGAAAAAGAAAAAA 1153
Query 1395 AAAGAGTTGTAAATCTTCTCACAT-TGATAC 1424
|||||||||||||||||||||||| || |||
Sbjct 1154 AAAGAGTTGTAAATCTTCTCACATGTGTTAC 1184
Score = 671 bits (363), Expect = 0.0
Identities = 455/498 (91%), Gaps = 12/498 (2%)
Strand=Plus/Plus
Query 1 ATGGCGTTTTTTAAGCTACTTTTGTTTCTTTTTCTCGTAACGCTCCAAATTGCTTCATTC 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCGTTTTTTAAGCTACTTTTGTTTCTTTTTCTCGTAACGCTCCAAATTGCTTCATTC 60
Query 61 ACTGGAAATGGAGAAGCTTCTTCTTCTTCCTCAGAGAACAATGGCTGCAATGGAGATCAA 120
|||| ||| ||||||||||||||||| || ||||||||||||||||||||||| ||||
Sbjct 61 ACTGTAAACGGAGAAGCTTCTTCTTC--CC-CAGAGAACAATGGCTGCAATGGACTTCAA 117
Query 121 AACCATTTGCTTAACGAACTCAAATCCACCGTCTCTGCTCTTCAATCAATCATCAAGGAG 180
||||||||||||||||||||||||||||| ||||||||||||||||||||||| | ||||
Sbjct 118 AACCATTTGCTTAACGAACTCAAATCCACTGTCTCTGCTCTTCAATCAATCATTACGGAG 177
Query 181 AAAAACCAAGAATTGCTTAGCAAGGAAGAGAAAATCCGAGGTTTGGAGTTATATATCAGG 240
||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||
Sbjct 178 AAAAACCAAGAATTGCTTAGCAAGGAAAAGAAAATCCGAGGCTTGGAGTTATATATCAGG 237
Query 241 GAGAAACCTTATTTGTTTGAGAGTGAAATTGATTTTTCTCAATTTGAGAATCCGGTAAAG 300
|||||| |||| ||||| |||||||| |||||||||||||||||||||||||| ||||||
Sbjct 238 GAGAAATCTTACTTGTTCGAGAGTGAGATTGATTTTTCTCAATTTGAGAATCCAGTAAAG 297
Query 301 CATGCGAGTGAAGTAGAAGAGAAGGTTTATGAACTACAGAAACAGGTATTTGGATTAAAA 360
|| || |||||||||||||| |||||||||||||| |||||||||||||||| | |||||
Sbjct 298 CACGCCAGTGAAGTAGAAGAAAAGGTTTATGAACTTCAGAAACAGGTATTTGAACTAAAA 357
Query 361 CGGGAAGTGGAAACGCAACGCAAGAGAAGGCTCGAAGTGGAAGCTGAATTAGCAGATA-A 419
||||||||||||| |||||||| ||||||||||||| ||||||||||| | ||||| | |
Sbjct 358 CGGGAAGTGGAAATGCAACGCACGAGAAGGCTCGAAATGGAAGCTGAAATCGCAGAGATA 417
Query 420 GAAAGTTGCACAACTTAGCTCAAAGCTTGAAAATATCGATGGG---TGGTTCTTGTCTAA 476
||||||||| |||||| |||||| | ||||||| |||||| ||||||||||||||
Sbjct 418 -AAAGTTGCAGAACTTACCTCAAATCATGAAAAT---GATGGGAAATGGTTCTTGTCTAA 473
Query 477 ACTTGGTCTTAAC-CCGA 493
||||||||| ||| ||||
Sbjct 474 ACTTGGTCTCAACACCGA 491
Score = 97.1 bits (52), Expect = 3e-19
Identities = 54/55 (98%), Gaps = 0/55 (0%)
Strand=Plus/Plus
Query 576 GAAAATTGAGCAAGTCCAGAAATGGTCAGAGCCTCACATTGAAACACTGAACTCA 630
||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 510 GAAAATTGAGCAAGTCCAGAAATGGTCAGAGCCTCACATTGAAACCCTGAACTCA 564
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56068840640
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5