BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G30130.1
Length=2506
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491740 jgi|Araly1|491740|fgenesh2_kg.7__1173__AT4G30130.1 3517 0.0
Ahg480823 jgi|Araly1|480823|fgenesh2_kg.3__3524__AT2G19090.1 191 2e-47
Ahg942134 jgi|Araly1|942134|scaffold_602678.1 56.5 9e-07
> Ahg491740 jgi|Araly1|491740|fgenesh2_kg.7__1173__AT4G30130.1
Length=2363
Score = 3517 bits (1904), Expect = 0.0
Identities = 2223/2374 (94%), Gaps = 33/2374 (1%)
Strand=Plus/Plus
Query 2 CTACTCACAAATATATTTTTGACC---GTTGTTCA--CTC-TC-ACCTTCTTCACACGCT 54
|||||||||||||||||||||||| |||||||| ||| || |||||||||||||||
Sbjct 1 CTACTCACAAATATATTTTTGACCGTTGTTGTTCACTCTCTTCTTCCTTCTTCACACGCT 60
Query 55 ---CCAC-ATCTTCTTCTGATTGACCTTTAACACCTGAAA-G---TT-TC-TC-CTCT-T 102
|||| | |||||||||||||||||||||||||||||| | || || || |||| |
Sbjct 61 CCACCACAAGCTTCTTCTGATTGACCTTTAACACCTGAAAGGTTTTTGTCTTCTCTCTCT 120
Query 103 GAGCTTTGGAATTGAAGCTAAGATAAGAAAT-TTAGAGAGAAATGGGATGTTCTCATTCG 161
| | || || || || | | | | | | || |||||||||||||||||||||||||
Sbjct 121 -ATC-TTCCAA--AAATCT-A-A-ACG-AGTCTT-GAGAGAAATGGGATGTTCTCATTCG 171
Query 162 AAGTTTGATGACGATGAAGCTGTTCAGATCTGTAAAGATAGGAAACGTTTCATCAAACAA 221
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 172 AAGTTTGATGACGATGAAGCTGTTCAGATCTGCAAAGATAGGAAACGTTTCATCAAACAA 231
Query 222 GCAGTGGAACATAGGACTGGGTTTGCTTCTGGTCACATTGCTTATATCCAGTCTCTGAGG 281
||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 232 GCAGTGGAATATAGGACTGGGTTTGCTTCAGGTCACATTGCTTATATCCAGTCTCTGAGA 291
Query 282 AAGGTTTCAGATGCTCTCCGGGAATATATCGAAGGAGATGAGCCACATGAGTTCATGTTG 341
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 292 AAAGTTTCAGATGCTCTCCGGGAATATATCGAAGGAGATGAGCCACATGAGTTCATGTTG 351
Query 342 GACACATGTGTCACTCCAGTGAAGAGAATGAGCAGCTCAGGCGGCTTCATTGAGATATCT 401
||||||| ||| ||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 352 GACACATTTGTGACTCCAGTGAAGAGAATGAGCAGCTCAGGCGGCTTCATTAAGATATCT 411
Query 402 CCTCCTTCAAAAATGGTTCAGAGTGAGGCAGAGTCGAAATTGAATGTCAACAGTTACTTG 461
|||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||
Sbjct 412 CCTCCTTCAAAAATGGTTCAGAGTGAGGCAGAGTCGAATTTGAATGTCAACAATTACTTG 471
Query 462 ATGGCTAGTGGAAGCAGACCGGTTCGGGTTGAAGAAAAGCCTCCTAGATCACCTGAGACT 521
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 472 ATGGCTAGTGGAAGCAGACCGGTTCGGGTTGAAGAAAAGCCTCCTAGATCACCTGAGACT 531
Query 522 TTTCAGGTTGAGACTTATGGAGCAGATAGTTTCTTTGGGATGAACATGAACATGAACAGT 581
|| ||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||
Sbjct 532 TTCCAGGTTGAGACTTATGGAGCAGATAGTTTCTTTGGGATGAATATGAACACGAACAGT 591
Query 582 CCGGGACTAGGCAGTCACAATATACCGCCTCCTTCACCACAGAACTCTCAATGGGATTTC 641
|||||||||| ||||||||||||||| |||||||| |||||||||||||| |||||||||
Sbjct 592 CCGGGACTAGTCAGTCACAATATACCACCTCCTTCGCCACAGAACTCTCAGTGGGATTTC 651
Query 642 TTTTGGAATCCATTCTCGGCATTGGATCAGTATGGATACAGTTATGATAACCAAAATGGT 701
|||||||||||||||||| ||||||| || || |||||||||||||||||||||| ||||
Sbjct 652 TTTTGGAATCCATTCTCGTCATTGGACCATTACGGATACAGTTATGATAACCAAAGTGGT 711
Query 702 ATGGATGATGATATGAGACGGCTGAGGCGGGTTCGGGAAGAAGAAGGGATTCCAGATCTT 761
|||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 712 ATGGATGATGATATGAGACGGCTGAGGCGGGTTCGGGAGGAAGAAGGGATTCCGGATCTT 771
Query 762 GAAGAAGATGAATATGTAAAGTTTGAGGATCATCATAACATGAAAGCAACAGAAGATTTT 821
||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||
Sbjct 772 GAAGAAGATGAATATGTAAGGTTTGAGGATCATCACAACATGAAAGCAACAGAAGATTTT 831
Query 822 AATGGAGGTAAAATGTATCAAGAAGATAAAGTAGAACATGTTAATGAGGAGTTCACGGAC 881
||||||||||||||| |||||||||||| ||||||||||||||||||||| ||||| |||
Sbjct 832 AATGGAGGTAAAATGGATCAAGAAGATAGAGTAGAACATGTTAATGAGGAATTCACTGAC 891
Query 882 AGTGGATGCAAGATTGAGAATGAGAGCGACAAGAACTGCAATGGAACTCAAGAACGGCGC 941
||| ||||| || |||||||||||| ||||||||||||| || |||||||||||||||
Sbjct 892 AGTAGATGCGAGGCTGAGAATGAGAGGGACAAGAACTGCATTGAAACTCAAGAACGGCGA 951
Query 942 AGTCTTGAGGTGTCCAGAGGAGGAACTACAGGGCATGTTGTTGGAGTTACATCAGATGAT 1001
|| ||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||
Sbjct 952 AGCCTTGAGGTGTCCAGAGGAGGAACTACAGGGCATGTTGTTGGAGCTACAACAGATGAT 1011
Query 1002 GGAAAAGGAGAGACACCTGGTTTCACTGTGTACTTGAATAGAAGGCCAACAAGCATGGCA 1061
| ||||||||||||||||||||||||||||||||||||| ||||||| || || ||||||
Sbjct 1012 GCAAAAGGAGAGACACCTGGTTTCACTGTGTACTTGAATCGAAGGCCGACGAGTATGGCA 1071
Query 1062 GAAGTTATTAAAGATCTTGAAGATCAGTTTGCGATCATATGTACCGCTGGTAAAGAAGTC 1121
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1072 GAAGTTATTAAAGGTCTTGAAGATCAGTTTGCGATCATATGTACCGCTGGTAAAGAAGTC 1131
Query 1122 TCGGGTCTGTTGGAAGCTAGTCGAGTTCAATACACATCCTCTAATGAACTGAGTGCCATG 1181
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1132 TCGGGTCTGTTGGAAGCTAGTCGAGTTCAATACACATCCTCTAATGAACTCAGTGCCATG 1191
Query 1182 ACAATGCTGAACCCAGTAGCTTTGTTCCGCTCAGGCGGCTCATCGAGATCTTCTTCCTCA 1241
| |||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1192 AAAATGCTGAACCCGGTAGCTTTGTTCCGCTCAGGCGGCTCATCAAGATCTTCTTCCTCA 1251
Query 1242 TCAAGATTCTTGATCAGCTCTTCTGGAGGTTCAAGGGCGAGTGAAT-TCGAAAGCAGCAG 1300
||||||||||| |||||||||||||||||||| ||||||||||||| | ||||| |||||
Sbjct 1252 TCAAGATTCTTAATCAGCTCTTCTGGAGGTTCCAGGGCGAGTGAATCT-GAAAGAAGCAG 1310
Query 1301 CGAATTTTCGGAAGAATCTTGTATGCTCTCGGGTAGCCATCAATCAACATTGGACCGACT 1360
||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 1311 CGAATTTTCGGAAGAATCTTGTATGCTTTCAGGTAGCCATCAATCAACATTGGACCGACT 1370
Query 1361 ATACGCGTGGGAGAAGAAACTCTATGATGAAGTCAAGTCTGGAGACCGAATACGGATTGC 1420
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 1371 ATACGCGTGGGAGAAGAAACTCTATGATGAAGTCAAGTCTGGAGATCGAATACGGATCGC 1430
Query 1421 ATATGAAAAGAAATGTTTGGTGCTGAGGAATCAGGATGTGAAAGGAGCTGACTCTTCGGC 1480
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||
Sbjct 1431 ATATGAAAAGAAATGTTTGGTGCTGAGGAATCAGGATGTGAAAGGAGTTGACTCTTCTGC 1490
Query 1481 AGTTGATAAAACAAGAGCTACAATAAGAGATCTACATACTCAGATCAAGGTCTCTATACA 1540
|||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 1491 AGTTGATAAAACTAGAGCTACAATTAGAGATCTACATACTCAGATCAAGGTCTCCATACA 1550
Query 1541 CTCAATAGAGTCTATTTCCGAAAGGATCGAGACTCTTCGCGACCAAGAACTGCTTCCACA 1600
||||||||||||||| || |||||||||||||||||||||||||||||||||||||| ||
Sbjct 1551 CTCAATAGAGTCTATCTCTGAAAGGATCGAGACTCTTCGCGACCAAGAACTGCTTCCGCA 1610
Query 1601 GCTTCTTGAGCTTGTTCAAGGATTAGCTCAGATGTGGAAAGTGATGGCAGAGTGTCACCA 1660
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1611 GCTTCTTGAGCTTCTTCAAGGATTAGCTCAGATGTGGAAAGTGATGGCAGAGTGTCACCA 1670
Query 1661 GATACAGAAGCGAACATTGGACGAAGCCAAACTATTACTTGCAACCACACCTTCTAACCG 1720
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1671 GATACAGAAGCGAACATTGGACGAAGCCAAGCTATTACTTGCAACCACACCTTCTAACCG 1730
Query 1721 TCACAAGAAGCAACAACAGACTTCACTACCAGAGATCAACTCTCAAAGATTAGCTCGATC 1780
|||||||||||||||||| ||||| ||||| |||||||||||||||||||||||||||||
Sbjct 1731 TCACAAGAAGCAACAACATACTTCTCTACCGGAGATCAACTCTCAAAGATTAGCTCGATC 1790
Query 1781 AGCATTGCATCTTGTGGTTCAGCTTCGAAACTGGAGAGCCTGCTTCCAAGCATGGATCAC 1840
|||||||||||| |||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1791 AGCATTGCATCTCGTGGCTCAGCTTCGAAACTGGAGAGCCTCCTTCCAAGCATGGATCAC 1850
Query 1841 ATCACAAAGATCCTACATACTCTCTTTAACCGGGTGGTTACTCAGATGTTTCAGATGTGA 1900
||| |||||||||||| | || |||||||||||||||||||||||||| |||||||||||
Sbjct 1851 ATCCCAAAGATCCTACGTGCTTTCTTTAACCGGGTGGTTACTCAGATGCTTCAGATGTGA 1910
Query 1901 CCCTGACCCAGAGAAAGTCACATTAACGTCTTGTCCTCACCCAATTTATGAAGTCTGCAT 1960
|||||||||||||||||||| | |||||||||||||||||||||| ||||||||||||||
Sbjct 1911 CCCTGACCCAGAGAAAGTCAGACTAACGTCTTGTCCTCACCCAATCTATGAAGTCTGCAT 1970
Query 1961 CCAATGGTCAAGGCTACTCAACGGATTAAACGAGAAGCCAGTACTAGACAAACTCGACTT 2020
||||||||||||| |||||||||| || ||||||||||||||||||||||||||||| ||
Sbjct 1971 CCAATGGTCAAGGTTACTCAACGGGTTGAACGAGAAGCCAGTACTAGACAAACTCGATTT 2030
Query 2021 CTTTGCCTCAGGGATGGGTGCAATCTATGCTCGGCAACTAA-AGGAAGACACGTCTCCGG 2079
||||||||| ||||||||||||||||||||||| || || | || ||||| ||| |||||
Sbjct 2031 CTTTGCCTCTGGGATGGGTGCAATCTATGCTCGTCAGCTTAGAG-AAGACCCGTTTCCGG 2089
Query 2080 TAACAGATTCTTCGAGGAAGTACTCAAGACCAGAGAGCATGGAGCTTGTTGAAGCTGAGA 2139
|||||||| |||||||||||||||| ||| ||||||||||||||||||||||||||| |
Sbjct 2090 TAACAGATGGTTCGAGGAAGTACTCAGGACAAGAGAGCATGGAGCTTGTTGAAGCTGAAA 2149
Query 2140 AAGTGGAAGAAGAGAAGATAATGACTGCAGAGAAACTAGCTGAGATTGCAGTTAAAGTAC 2199
|||||||||| |||||||| |||| |||||||||||| ||||||||||||||||||||||
Sbjct 2150 AAGTGGAAGAGGAGAAGATGATGAGTGCAGAGAAACTGGCTGAGATTGCAGTTAAAGTAC 2209
Query 2200 TCTGCCATGGAATGTCAGTTGCAGTGAGCTCACTCGCCGAGTTCTCCATTAGCTCAGCCG 2259
|||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| |
Sbjct 2210 TCTGCCATGGAATGTCAGTTGCAGTGAGCTCACTAGCCGAGTTTTCCATTAGCTCAGCTG 2269
Query 2260 ATGAACACTCGAAGCTAGTTACCCATCGAGAGGAGGACATGCCAGAGCAAACCAAGATTT 2319
|||||||||||||||| |||||||||| |||||| | |||||||||||||||||||||||
Sbjct 2270 ATGAACACTCGAAGCTCGTTACCCATCCAGAGGAAGCCATGCCAGAGCAAACCAAGATTT 2329
Query 2320 AAACTTTTCTATTCTCAACTTCTCATTTATTTAT 2353
|||||||| |||||||||||||||||||||||||
Sbjct 2330 AAACTTTTGTATTCTCAACTTCTCATTTATTTAT 2363
> Ahg480823 jgi|Araly1|480823|fgenesh2_kg.3__3524__AT2G19090.1
Length=2421
Score = 191 bits (103), Expect = 2e-47
Identities = 140/158 (89%), Gaps = 2/158 (1%)
Strand=Plus/Plus
Query 144 ATGGGATGTTCTCATTCGAAGTTTGATGACGATGAAGCTGTTCAGATCTGTAAAGATAGG 203
||||||||||||||||| ||||| ||||| || ||||| |||||||||||||||||||||
Sbjct 1 ATGGGATGTTCTCATTCAAAGTTAGATGATGAAGAAGCAGTTCAGATCTGTAAAGATAGG 60
Query 204 AAACGTTTCATCAAACAAGC-AGTGGAACATAGGACTGGGTTTGCTTCTGGTCACATTGC 262
|||||||||||||||||||| | | |||||||| ||| |||||||||||||||||||||
Sbjct 61 AAACGTTTCATCAAACAAGCTA-TAGAACATAGAACTAAGTTTGCTTCTGGTCACATTGC 119
Query 263 TTATATCCAGTCTCTGAGGAAGGTTTCAGATGCTCTCC 300
|||||| || ||||| || || || || ||||||||||
Sbjct 120 TTATATTCACTCTCTTAGAAATGTCTCTGATGCTCTCC 157
> Ahg942134 jgi|Araly1|942134|scaffold_602678.1
Length=2344
Score = 56.5 bits (30), Expect = 9e-07
Identities = 32/33 (97%), Gaps = 0/33 (0%)
Strand=Plus/Plus
Query 1365 GCGTGGGAGAAGAAACTCTATGATGAAGTCAAG 1397
||||||||||||||||||||||||||||| |||
Sbjct 1248 GCGTGGGAGAAGAAACTCTATGATGAAGTGAAG 1280
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 94463807600
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5