BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G30140.1
Length=1391
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491739 jgi|Araly1|491739|fgenesh2_kg.7__1172__AT4G30140.1 1736 0.0
Ahg319861 jgi|Araly1|319861|fgenesh1_pm.C_scaffold_3002877 178 1e-43
> Ahg491739 jgi|Araly1|491739|fgenesh2_kg.7__1172__AT4G30140.1
Length=1234
Score = 1736 bits (940), Expect = 0.0
Identities = 1133/1223 (93%), Gaps = 25/1223 (2%)
Strand=Plus/Plus
Query 50 ACAATAAGCCCActtttcttcttctctcatcaagctttttcttctctcctcatttttcGT 109
|||||||||| ||||||||||||||||||| |||| ||| |||||||||||||||||||
Sbjct 1 ACAATAAGCCAACTTTTCTTCTTCTCTCATTAAGC--TTT-TTCTCTCCTCATTTTTCGT 57
Query 110 ATAATTCGATTTGCGAAAAATGGTCGAGGGAGAGTCCAAGGCATTGTGGATTATTTTGGC 169
| | | || || ||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 58 GT-A----A-TT-CG-AAAATGGTCGAGGGAGAGTCCAAGGCATTGTGGATTATTGTGGC 109
Query 170 CACCGTGTTTGCAGTCGCGGCGGTGGCACCAGCGGTGCATGGACAGCAAACGCCGTGTTA 229
|||||||||||||||||||||||| |||||||||| |||||||| ||| ||||||||||
Sbjct 110 CACCGTGTTTGCAGTCGCGGCGGTCGCACCAGCGGCACATGGACAACAAGCGCCGTGTTA 169
Query 230 CTTCGTGTTTGGAGACTCTGTCTTCGACAACGGTAACAACAATGCCTTGAACACCAAGGC 289
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 170 CTTCGTGTTTGGAGACTCTGTCTTCGACAATGGTAACAACAATGCCTTGAACACCAAGGC 229
Query 290 CAAGGTCAACTATTTACCTTATGGTATAGA-TTACTTTCAAGGTCCAACCGGTCGGTTTA 348
||||||||||||||||||||||||||||| || | ||||||||| |||||||||||||
Sbjct 230 TAAGGTCAACTATTTACCTTATGGTATAGATTTTC-CTCAAGGTCCGACCGGTCGGTTTA 288
Query 349 GCAACGGTCGGAATATTCCAGACGTTATCGCTGAACTAGCGGGTTTCAATAACCCAATTC 408
|||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 289 GCAACGGTCGGAATATTCCAGACGTTATCGCTGAACTAGCGGGTTTCAATGACTCAATTC 348
Query 409 CACCATTTGCCGGAGCATCACAGGCACAAGCTAACATCGGACTCAACTATGCTTCCGGTG 468
|||| || |||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 349 CACCGTTCGCCGGAGCATCACAAGCACAAGCTAACATCGGACTCAACTATGCTTCCGGTG 408
Query 469 CCGGCGGTATCCGCGAAGAAACCAGCGAAAATATGGGTGAGAGAATCAGTTTGAGACAGC 528
|||| |||||||||||||| |||||||||||||||||||||||||||||||||||| |||
Sbjct 409 CCGGAGGTATCCGCGAAGACACCAGCGAAAATATGGGTGAGAGAATCAGTTTGAGAAAGC 468
Query 529 AAGTAAACAACCACTTTTCCGCTATCATAACCGCGGCGGTGCCACTGAGTCGGTTAAGGC 588
|| ||||||||||| | || || ||||||| |||||||||||||| ||||| ||||||||
Sbjct 469 AAATAAACAACCACCTGTCGGCGATCATAAACGCGGCGGTGCCACGGAGTCAGTTAAGGC 528
Query 589 AATGTCTATACACAATCAACATCGGAAGCAACGATTACCTCAACAACTACTTCTTGTCGC 648
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 529 AATGTCTATACACAATCAACATCGGAAGCAACGATTACCTCAACAACTACTTCTTGTCGC 588
Query 649 CTCCTACTCTAGCTCGTCGTCTATTTAATCCTGACCAGTACGCTCGATCTCTCATAAGCC 708
|||||||| |||| |||||| ||| ||||||||||||||||||||||||||||||| |||
Sbjct 589 CTCCTACTTTAGCACGTCGTATATATAATCCTGACCAGTACGCTCGATCTCTCATACGCC 648
Query 709 TCTACCGTATCTATCTG-ACGCAATTGTACGTACTAGGAGCGAGGAATGTAGCGTTGTTC 767
|||||||| | ||| || | ||||||||||||||||||||||||||||||||| ||||||
Sbjct 649 TCTACCGTTTTTATTTGGA-GCAATTGTACGTACTAGGAGCGAGGAATGTAGCTTTGTTC 707
Query 768 GGTATCGGTAAGATCGGATGTACACCACGGATTGTTGCTACCCTCGGTGGCGGCACTGGC 827
|||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 708 AGTATCGGTAAGATCGGATGTACACCACGAATTGTTGCTACCCTTGGTGGCGGCACTGGC 767
Query 828 TGCGCAGAAGAAGTGAACCAAGCCGTGA-TCATCTTCAACACTAAACTCAAAGCCCTAGT 886
|| |||||||||||||||||||||| || || ||||||||| ||||||||||| ||||||
Sbjct 768 TGTGCAGAAGAAGTGAACCAAGCCGCGAATC-TCTTCAACATTAAACTCAAAGACCTAGT 826
Query 887 CAC-AGATTTCAACAACAAACCGGGAGCTATGTTCACTTATGTTGATCTCTTCTCTGGAA 945
||| | ||| ||||||||| | ||||||| |||||||||||||||||||||||||||||
Sbjct 827 CACTACTTTT-AACAACAAATCTGGAGCTAAGTTCACTTATGTTGATCTCTTCTCTGGAA 885
Query 946 ATGCTGAAGATTTCGCCGCTCTAGGGATTACGGTTGGTGATAGGAGTTGCTGTACGGTTA 1005
|||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 886 ATGCTGAAGATTTCGCAGCTCTAGGGATTACGGTTGGTGATAGGAGTTGCTGTACTGTTA 945
Query 1006 ATCCGGGTGAAGAACTTTGTGCGGCGAACGGACCGGTTTGTCCAGACAGAAACAAATTCA 1065
||||||| |||||||||||||| |||||||||||||||||||||||| ||||||||| ||
Sbjct 946 ATCCGGGGGAAGAACTTTGTGCTGCGAACGGACCGGTTTGTCCAGACCGAAACAAATACA 1005
Query 1066 TATTCTGGGATAACGTGCATACTACGGAAGTGATAAATACTGTGGTGGCTAACGCAGCGT 1125
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1006 TATTCTGGGATAACGTGCATACTACGGAAGTGATCAATACTGTGGTGGCTAACGCAGCGT 1065
Query 1126 TTAACGGACCTATAGCTAG-TCCGTTCAACATATCCCAG-TTAGTGAATTAAAATTAGGG 1183
||||||||||||||||| | ||||||||||||||||||| || ||||||||| |||||||
Sbjct 1066 TTAACGGACCTATAGCT-GCTCCGTTCAACATATCCCAGCTT-GTGAATTAATATTAGGG 1123
Query 1184 CTCTAT-TCCATTGTTAAAATGGCATAGTCCCTTTATTTAAAACTTGGTTTCGTCTAGAT 1242
|| ||| |||||||||||||||||||||||| | ||| |||| | |||||||||||||||
Sbjct 1124 CTTTATATCCATTGTTAAAATGGCATAGTCC-TCTATGTAAATCCTGGTTTCGTCTAGAT 1182
Query 1243 TGAAACCATATATCAGACACATA 1265
||||||||||||||||||||||
Sbjct 1183 GGAAACCATATATCAGACACATA 1205
> Ahg319861 jgi|Araly1|319861|fgenesh1_pm.C_scaffold_3002877
Length=1038
Score = 178 bits (96), Expect = 1e-43
Identities = 330/440 (75%), Gaps = 28/440 (6%)
Strand=Plus/Plus
Query 221 GCCGTGTTACTTCGTGTTTGGAGACT-C-TGTCTTCGACAACGGTAACAACAATGCCTTG 278
|||||||| |||||| |||||||||| | |||| ||| || || ||||| ||| ||||
Sbjct 72 GCCGTGTTTCTTCGTCTTTGGAGACTCCATGTC--CGATAATGGAAACAATAATAACTTG 129
Query 279 AACA-CCAAGGCCAAGGTCAACTATTT-ACCTTATGGTATAGA-TTACTTTCAAGGTCCA 335
|| | | |||| || ||||||| ||| |||||||||||| || || | ||||| ||
Sbjct 130 AA-ATCTGAGGCAAAAGTCAACT-TTTCACCTTATGGTATTGACTTTC-CCCAAGGCCCG 186
Query 336 ACCGGTCGGTTTAGCAACGGTCGGAATATTCCAGACGTTATCGCTGAACTAGCGGGTTTC 395
||||| || ||| ||| || || | ||| || || |||||| ||||||| |||||||
Sbjct 187 ACCGGCCGTTTTTCCAATGGCCGCACTATCCCCGATATTATCGGTGAACTATCGGGTTTT 246
Query 396 AA-TAACCCAATTCCACCATTTGCCGGAGCATCACAGGCACAAGCTAACATC-GGACTCA 453
|| | | || || ||||| ||||||||||||| || ||||||| ||| | ||| | |
Sbjct 247 AAGGATTTC-ATACCGCCATTCGCCGGAGCATCACCGGAACAAGCTCACACCGGGA-TGA 304
Query 454 ACTATGCTTCCGGTGCCGGCGGTA-TCCGCGAAGAAACCAGCGAA-AATATGGGTGAGAG 511
|||| |||||||||| | || | | || |||||||| |||||| | | |||| || ||
Sbjct 305 ACTACGCTTCCGGTGGAAGTGG-ACTTCGTGAAGAAACAAGCGAACACT-TGGGAGATAG 362
Query 512 AATCAGTTTGAGACAGCAAGTA-AACAACCACTTTTCCGCTATCA-TAACCGCGGCGGTG 569
||||||| | ||| ||||| || || || ||| | || || | || ||| ||
Sbjct 363 AATCAGTATAAGAAAGCAACTACAA-AATCACAAGACAGCGATAACGAA-AGCGAATGTT 420
Query 570 CCA-CTG--AGTCGGTTAAGGCAATGTCTATACACAATCAACATCGGAAGCAACGATTAC 626
||| | | || | | || |||||||| ||||||||||||||||||||||||||||||
Sbjct 421 CCAGCAGAAAGACTG-CAA--CAATGTCTCTACACAATCAACATCGGAAGCAACGATTAC 477
Query 627 CTCAACAACTACTTCTTGTC 646
||||||| |||||| ||||
Sbjct 478 ATCAACAATTACTTCATGTC 497
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51993184425
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5