BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G30160.2
Length=3462
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491737 jgi|Araly1|491737|fgenesh2_kg.7__1170__AT4G30160.1 3062 0.0
> Ahg491737 jgi|Araly1|491737|fgenesh2_kg.7__1170__AT4G30160.1
Length=3890
Score = 3062 bits (1658), Expect = 0.0
Identities = 1791/1854 (97%), Gaps = 13/1854 (1%)
Strand=Plus/Plus
Query 320 TGGTATTGAGATATGGCGTATAGAGAATTTCATCCCTACCCCAATTCCAAAATCTTCTAT 379
||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||
Sbjct 479 TGGTATTGAGATATGGCGTATAGAGAATTTCCTCCCTACCCCCATTCCAAAATCTTCTAT 538
Query 380 TGGGAAGTTTTTCACCGGAGATTCTTACATAGTATTGAAGACAACGGCGTTAAAAACTGG 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 539 TGGGAAGTTTTTCACCGGAGATTCTTACATAGTATTGAAGACAACGGCGTTAAAAACTGG 598
Query 440 TGCATTGCGCCATGATATCCATTACTGGCTTGGTAAAGATACCTCTCAGGATGAAGCCGG 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 TGCATTGCGCCATGATATCCATTACTGGCTTGGTAAAGATACCTCTCAGGATGAAGCCGG 658
Query 500 TACTGCTGCAGTTAAGACAGTTGAATTAGATGCTGCTCTAGGAGGTCGTGCAGTGCAGTA 559
|||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 659 GACTGCTGCAGTTAAGACAGTTGAATTAGATGCTGCTCTTGGAGGTCGTGCAGTTCAGTA 718
Query 560 TCGGGAAGTTCAAGGCCACGAGACTGAGAAATTCTTGTCTTATTTTAAGCCATGTATCAT 619
||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 719 TCGGGAAGTTCAAGGCCACGAAACCGAGAAATTCTTGTCTTATTTTAAGCCATGTATCAT 778
Query 620 TCCTCAAGAAGGTGGAGTAGCATCAGGATTCAAGCATGTCGTAGCTGAAGAACATATTAC 679
|||||||||||||||| ||||||| |||||||| ||||| |||||||||||||||| |||
Sbjct 779 TCCTCAAGAAGGTGGAATAGCATCTGGATTCAAACATGTGGTAGCTGAAGAACATACTAC 838
Query 680 CCGCTTGTTCGTCTGCAGAGGAAAACATGTTGTCCATGTCAAAGAGGTTCCTTTTGCTCG 739
|||||||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct 839 CCGCTTGTTCGTCTGCAGAGGAAAACATGTTGTCCA--T-------GTTCCTTTTGCTCG 889
Query 740 GAGTTCATTAAACCATGACGATATTTACATTCTTGACACAAAGTCCAAGATTTTCCAATT 799
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 890 GAGTTCTTTAAACCATGACGATATTTACATTCTTGACACAAAGTCCAAGATTTTCCAATT 949
Query 800 CAATGGATCCAATTCTAGTATCCAAGAGAGAGCAAAAGCACTGGAAGTGGTTCAGTACAT 859
||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 950 CAATGGATCCAATTCAAGTATCCAGGAGAGAGCAAAAGCACTGGAAGTGGTTCAGTACAT 1009
Query 860 CAAAGATACTTACCATGATGGGACATGTGAAGTTGCTACAGTTGAGGATGGGAAACTTAT 919
|||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 1010 CAAAGATACTTACCATGATGGGACATGTGAAGTTGCAACAGTTGAGGATGGAAAACTTAT 1069
Query 920 GGCTGATGCTGATAGTGGAGAATTTTGGGGTTTCTTTGGTGGGTTTGCTCCGCTACCTAG 979
|||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1070 GGCTGATGCTGACAGTGGAGAATTTTGGGGTTTCTTTGGTGGGTTTGCTCCACTACCTAG 1129
Query 980 GAAAACAGCTAATGATGAAGACAAAACTTATAATTCAGATATCACCAGATTATTTTGTGT 1039
|||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||
Sbjct 1130 GAAAACAGCTAATGATGAAGACAAAACTTATAATTCCGATATCACCAAATTATTTTGTGT 1189
Query 1040 CGAGAAGGGACAGGCAAATCCTGTTGAAGGCGATACATTGAAGAGGGAGATGCTGGATAC 1099
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1190 CGAGGAGGGACAGGCAAATCCTGTTGAAGGCGATACATTGAAGAGGGAGATGCTGGATAC 1249
Query 1100 AAACAAGTGTTACATTCTTGATTGTGGAATTGAAGTGTTTGTTTGGATGGGAAGAACCAC 1159
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1250 AAACAAGTGTTACATTCTTGATTGTGGAATTGAAGTGTTTGTTTGGATGGGAAGAACCAC 1309
Query 1160 TTCTCTTGATGATAGAAAAATTGCGAGTAAAGCAGCAGAAGAAATGATCCGTTCATCTGA 1219
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1310 TTCTCTTGATGATAGAAAAATTGCGAGTGGAGCAGCAGAAGAAATGATCCGTTCATCTGA 1369
Query 1220 ACGACCGAAATCGCAAATGATCCGCATAATAGAAGGGTTTGAAACAGTACCATTCCGATC 1279
|||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1370 ACGACCCAAATCGCAAATGATCCGCATAATAGAAGGGTTTGAAACCGTACCATTCCGATC 1429
Query 1280 AAAGTTTGAATCTTGGACTCAAGAAACTAATACAACCGTGTCAGAAGATGGTAGAGGCAG 1339
|||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 1430 AAAGTTTGAATCTTGGACTCAAGAAACTAACACAACCGTGTCAGAGGATGGTAGAGGCAG 1489
Query 1340 AGTTGCTGCTCTTTTGCAACGACAAGGAGTAAATGTCAGAGGCCTGATGAAAGCTGCTCC 1399
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1490 AGTTGCTGCTCTTTTGCAACGACAAGGAGTAAATGTCAGAGGCCTGATGAAAGCTGCTCC 1549
Query 1400 GCCTAAAGAAGAGCCTCAGGTTTTCATCGACTGCACGGGAAATCTGCAGGTTTGGCGTGT 1459
|||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 1550 GCCTAAAGAAGAGCCTCAAGTTTTCATCGATTGCACGGGAAATCTGCAGGTTTGGCGTGT 1609
Query 1460 GAATGGTCAGGCAAAGACTCTCCTTCAAGCTGCTGATCATTCAAAATTCTACAGTGGAGA 1519
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1610 AAATGGTCAGGCAAAGACTCTCCTTCAAGCTGCTGATCATTCAAAATTCTACAGTGGAGA 1669
Query 1520 TTGCTATGTTTTCCAGTATTCTTATCCCGGAGAAGAAAAAGAAGAAGTTCTTATAGGAAC 1579
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1670 TTGCTATGTTTTCCAGTATTCTTATCCCGGAGAAGAAAAAGAAGAAGTCCTTATAGGAAC 1729
Query 1580 GTGGTTTGGCAAACAAAGTGTGGAGGAAGAAAGAGGTTCTGCAGTCTCTATGGCAAGCAA 1639
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1730 GTGGTTCGGCAAACAAAGTGTGGAGGAAGAAAGAGGTTCTGCAGTCTCTATGGCAAGCAA 1789
Query 1640 AATGGTTGAGTCAATGAAATTTGTCCCAGCCCAAGCTCGCATTTATGAAGGAAAGGAACC 1699
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1790 AATGGTTGAGTCAATGAAATTTGTCCCAGCCCAAGCTCGCATTTATGAAGGAAAGGAACC 1849
Query 1700 AATTCA-ATTCTTCGTGATTATGCAAAGCTTTATCGTTTTCAAGGGTGGTATTAGCAGTG 1758
|| | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1850 CGTT-ATATTCTTCGTGATTATGCAAAGCTTTATCGTTTTCAAGGGTGGTATTAGCAGTG 1908
Query 1759 GATACAAGAAATACATAGCCGAGAAAGAAGTTGATGATGATACATACAATGAGAATGGTG 1818
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1909 GATACAAGAAATACATAGCCGAGAAAGAAGTTGACGATGATACATACAATGAGAATGGTC 1968
Query 1819 TTGCTCTATTCCGAATTCAAGGGTCTGGTCCGGAAAATATGCAAGCTATACAAGTTGACC 1878
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1969 TTGCTCTATTCCGCATTCAAGGGTCTGGTCCGGAAAATATGCAAGCTATACAAGTTGACC 2028
Query 1879 CGGTTGCTGCATCACTGAACTCCTCGTACTATTACATACTACATAATGATTCTTCCGTCT 1938
|||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 2029 CGGTTGCTTCATCACTGAACTCCTCATACTATTACATACTACATAATGATTCTTCCGTCT 2088
Query 1939 TTACTTGGGCTGGAAATTTATCAACCGCAACTGACCAAGAACTGG-CGGAAAGGCAGCTA 1997
||||||||||||||||| ||||||||||||||||||||||||| | || ||||||||||
Sbjct 2089 TTACTTGGGCTGGAAATCTATCAACCGCAACTGACCAAGAACTTGTCG-AAAGGCAGCTC 2147
Query 1998 GATCTGATTAAGCCAAATCAACAATCTAGAGCACAAAAGGAAGGTTCAGAATCAGAACAG 2057
||||||||||||||||||| ||| ||||||||||||||||||| |||||||||||||||
Sbjct 2148 GATCTGATTAAGCCAAATCTACAGGCTAGAGCACAAAAGGAAGGATCAGAATCAGAACAG 2207
Query 2058 TTCTGGGAGTTATTAGGAGGCAAAGCTGAATATTCGAGCCAAAAGCTCACAAAGGAACCC 2117
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 2208 TTCTGGGAGTTATTAGGAGGCAAAGCTGAATATTCGAGCCAAAAGCTCACGAAGGAACCC 2267
Query 2118 GAGCGTGACCCTCACTTGTTCTCTTGTACATTCACAAAAGAAGTTCTCAAGGTG 2171
|||||||||||||||||||||||||||||||||||||||||| |||| ||||||
Sbjct 2268 GAGCGTGACCCTCACTTGTTCTCTTGTACATTCACAAAAGAAATTCTGAAGGTG 2321
Score = 1729 bits (936), Expect = 0.0
Identities = 1018/1058 (96%), Gaps = 3/1058 (0%)
Strand=Plus/Plus
Query 2196 GTGACAGAGATATATAACTTTACACAGGATGACTTGATGACCGAAGATATATTTATCATA 2255
|||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 2319 GTGACAGAGATACATAACTTCACACAGGATGACTTGATGACCGAAGATATATTTATAATA 2378
Query 2256 GACTGTCACTCAGAAATCTTTGTCTGGGTTGGCCAAGAAGTAGTCCCAAAGAACAAGTTA 2315
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 2379 GACTGTCACTCAGAAATCTTTGTCTGGGTTGGCCAAGAAGTAGTCCCAAAGAGCAAGTTA 2438
Query 2316 CTAGCTTTAACTATTGGAGAGAAATTCATCGAGAAAGATTCTCTCCTGGAGAAGTTATCC 2375
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2439 CTAGCTTTAAGTATTGGAGAGAAATTCATCGAGAAAGATTCTCTCCTGGAGAAGTTATCC 2498
Query 2376 CCTGAAGCCCCTATTTATGTGATCATGGAAGGCGGTGAGCCGTCATTCTTCACCCGGTTC 2435
|||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 2499 CCTGAAGCCCCTATATATGTGATCATGGAAGGCGGTGAGCCGTCATTCTTCACCAGGTTT 2558
Query 2436 TTCACTTCTTGGGATTCCTCAAAATCCGCTATGCATGGAAACTCATTCCAAAGAAAACTT 2495
|||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 2559 TTCACTTCCTGGGATTCCTCAAAATCCACTATGCATGGAAACTCATTCCAAAGAAAACTT 2618
Query 2496 AAAATTGTCAAAAATGGTGGAACTCCAGTGGCAGATAAACCAAAACGAAGAACTCCAGCT 2555
||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 2619 AAAATTGTCAAAAATGGTGGAACTCCAGTTGCAGATAAACCGAAACGAAGAACTCCAGCT 2678
Query 2556 TCATATGGTGGCCGTGCCAGCGTTCCTGACAAGTCGCAGCAGCGGTCAAGAAGCATGTCA 2615
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 2679 TCATATGGTGGCCGTGCCAGCGTTCCTGACAAGTCGCAGCAGCGGTCAAGAAGTATGTCG 2738
Query 2616 TTTAGTCCAGACAGGGTTCGCGTGAGGGGCAGATCTCCGGCGTTCAATGCACTCGCAGCA 2675
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 2739 TTTAGTCCAGACAGGGTTCGCGTGAGGGGCAGATCTCCAGCGTTCAATGCACTCGCAGCA 2798
Query 2676 ACATTTGAGAGCCAAAATGCAAGAAACCTGTCAACTCCTCCCCCAGTAGTTAGGAAACTC 2735
||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 2799 ACATTTGAGAGCCAAAATGCAAGAAACCTCTCAACTCCTCCCCCAGTAGTTAGAAAACTC 2858
Query 2736 TACCCAAGATCTGTTACTCCTGACTCCTCAAAGTTTGCTCCCGCTCCCAAGTCTTCAGCC 2795
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 2859 TACCCGAGATCTGTTACTCCTGACTCCTCAAAGTTTGCTCCCGCTCCCAAGTCTTCGGCC 2918
Query 2796 ATCGCTTCTCGAAGTGCACTTTTCGAAAAAATACCTCCACAAGAACCTTCAATTCCAAAA 2855
|| |||||||| ||||||||||||||||||| |||||| |||||||||||||||||||||
Sbjct 2919 ATTGCTTCTCGTAGTGCACTTTTCGAAAAAACACCTCCCCAAGAACCTTCAATTCCAAAA 2978
Query 2856 CCAGTCAAAGCGAGCCCGAAGACACCTGAGTCTCCAGCGCCAGAATCCAATTCAAAAGAA 2915
||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 2979 CCACTCAAAGCGAGCCCGAAGACACCTGAGTCTCCAGCGCCAGAATCCAACTCAAAAGAA 3038
Query 2916 CAAGAAGAGAAAAAGGAAAATGACAAGGAGGAGG-G--ATCAATGAGCAGCCGGATAGAA 2972
|| ||||||||||||||||||||||||||||||| | ||| |||||||||||| |||||
Sbjct 3039 CAGGAAGAGAAAAAGGAAAATGACAAGGAGGAGGAGAAATCGATGAGCAGCCGGTTAGAA 3098
Query 2973 TCTCTTACGATTCAAGAAGATGCTAAAGAAGGAGTCGAAGACGAGGAAGATTTACCAGCT 3032
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3099 TCTCTGACGATTCAAGAAGATGCTAAAGAAGGAGTCGAAGACGAGGAAGATTTACCAGCT 3158
Query 3033 CACCCTTATGATCGTCTCAAGACAACTTCCACTGATCCTGTCTCTGACATTGATGTAACA 3092
|||||||| || |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 3159 CACCCTTACGAACGTCTCAAGACAACTTCCACTGATCCTGTCTCAGACATTGATGTAACA 3218
Query 3093 AGGAGAGAGGCTTACCTTTCATCAGAAGAGTTCAAGGAGAAATTTGGCATGACGAAAGAA 3152
||||||||||||||||||||||| || ||||||||||||||||| || ||||||||||||
Sbjct 3219 AGGAGAGAGGCTTACCTTTCATCTGAGGAGTTCAAGGAGAAATTCGGTATGACGAAAGAA 3278
Query 3153 GCTTTCTACAAGCTGCCTAAATGGAAACAGAACAAATTCAAAATGGCTGTTCAGCTTTTC 3212
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3279 GCTTTCTACAAGCTGCCTAAATGGAAACAGAACAAATTCAAAATGGCTGTTCAGCTTTTC 3338
Query 3213 TGAGATATAATCCTTCTTCTTCTCCATCAAAAGATCCG 3250
||||| ||||||||||||||||||||||||||||||||
Sbjct 3339 TGAGAAATAATCCTTCTTCTTCTCCATCAAAAGATCCG 3376
Score = 281 bits (152), Expect = 2e-74
Identities = 162/167 (97%), Gaps = 0/167 (0%)
Strand=Plus/Plus
Query 154 GATTGGATCTGGGCTTGGAGCTGAATAGCGGATTTGTATAAGGTTATTATTAGTCTTCTC 213
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 283 GATTGGATCTGGGCTTGGAGCTGAATAGCGGATTTGTACAAGGTTATTATTAGTCTTCTC 342
Query 214 TATCGTTGCGGCGTTCATAAGTTGGAGAAAGTGGTAAAGACTGCTTAAGTATGTCTGTTT 273
|||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 343 TATCGTTGTGGTGTTCATAAGTTGGAGAAAGTGGTAAAGACTGCTTAAGTATGTCTGTTT 402
Query 274 CTATGAGAGATTTAGATCCAGCTTTCCAAGGAGCTGGACAGAAAGCT 320
| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 403 CAATGAGAGATTTAGATCCAGCTTTCCAAGGAGCTGGACAGAAGGCT 449
Score = 75.0 bits (40), Expect = 3e-12
Identities = 51/56 (91%), Gaps = 2/56 (4%)
Strand=Plus/Plus
Query 99 AATTGAAGAATGAAGAAATAAACAGTTGATGGGTTCTTCGCTTCTTCTCTTGTTGG 154
||||||||||||||||||||||||||||||||||| | | |||||| | |||||||
Sbjct 1 AATTGAAGAATGAAGAAATAAACAGTTGATGGGTT-T-CTCTTCTTGTGTTGTTGG 54
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 130727763255
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5