BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G30170.1
Length=1204
Score E
Sequences producing significant alignments: (Bits) Value
Ahg889105 jgi|Araly1|889105|Al_scaffold_0007_1091 1496 0.0
Ahg914052 jgi|Araly1|914052|Al_scaffold_0001_4306 60.2 3e-08
> Ahg889105 jgi|Araly1|889105|Al_scaffold_0007_1091
Length=978
Score = 1496 bits (810), Expect = 0.0
Identities = 925/981 (94%), Gaps = 6/981 (1%)
Strand=Plus/Plus
Query 82 ATGGAGAAGAATACTTCTCAAACCATCTTCTCCA-ACTTTTTTCTTCTCCTTCTCCTTTC 140
||||||||| ||||| | |||||||||||||||| | |||| |||||| |||||||||||
Sbjct 1 ATGGAGAAGTATACTGCCCAAACCATCTTCTCCATA-TTTTCTCTTCTTCTTCTCCTTTC 59
Query 141 TTCATGTGTCTCTGCTCAGCTCCGGACAGGTTTCTACCAGAACTCATGTCCGAACGTGGA 200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 60 TTCATGTGTCTCTGCTCAGCTCCGGACAGGTTTCTACCAGAACTCATGTCCGAACGTCGA 119
Query 201 AACCATTGTACGTAACGCTGTCCGTCAGAAATTCCAGCAGACTTTCGTTACCGCTCCGGC 260
| |||||| |||||||| |||||||||||||||||||||||||| ||||| ||||||||
Sbjct 120 AGGCATTGTCCGTAACGCCGTCCGTCAGAAATTCCAGCAGACTTTTGTTACGGCTCCGGC 179
Query 261 CACTCTTCGCCTCTTCTTCCACGATTGCTTCGTTCGTGGATGTGATGCGTCAATAATGAT 320
|||||| ||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 180 CACTCTCCGCCTCTTCTTCCACGATTGCTTCGTTCGGGGGTGTGATGCGTCAATAATGAT 239
Query 321 AGCATCACCATCGGAGAGAGACCATCCAGATGACATGTCATTGGCCGGAGACGGATTCGA 380
||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 240 AGCATCACCGTCGGAGAGAGACCATCCAGATGACATGTCATTGGCCGGAGATGGATTCGA 299
Query 381 CACGGTGGTGAAGGCGAAGCAAGCCGTTGATAGCAATCCCAATTGCCGCAACAAAGTCTC 440
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 300 CACGGTGGTGAAGGCGAAGCAAGCCGTTGATAGCAATCCCAACTGCCGCAACAAAGTCTC 359
Query 441 ATGTGCTGACATTTTGGCTCTCGCCACTCGTGAAGTCGTCGTTTTGACCGGAGGACCAAG 500
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 360 ATGTGCTGACATTTTGGCTCTCGCCACTCGTGAAGTCGTCGTTTTGACCGGAGGACCGAG 419
Query 501 CTACCCGGTGGAGCTAGGGAGGAGAGATGGCAGAATCTCCACGAAGGCCAGCGTTCAAAG 560
||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 420 CTACCCGGTGGAGCTAGGGAGGAGAGATGGCAGAATCTCCACGCAGTCCAGCGTTCAAAA 479
Query 561 CCAATTGCCTCAGCCCGAG-TTTAACCTAAACCAGCTCAACGGCATGTTTAGCCGTCACG 619
|||| |||||||||||| | ||||||||||||||||||||||||||||||||||||||||
Sbjct 480 CCAACTGCCTCAGCCCG-GTTTTAACCTAAACCAGCTCAACGGCATGTTTAGCCGTCACG 538
Query 620 GCCTCTCTCAAACCGATATGATTGCCCTCTCAGGAGCACACACTATAGGATTTGCACATT 679
| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 539 GTCTCTCTCAAACCGATATGATCGCCCTCTCAGGAGCACACACTATAGGATTTGCACATT 598
Query 680 GTGGAAAAATGTCAAAGAGAATATACAATTTTAGCCCTACAAC-ACGTATCGACCCGAGT 738
|||||||| | |||||||||| |||||||||||||||| | ||||||||| |||| |
Sbjct 599 GTGGAAAATTCACAAAGAGAATCTACAATTTTAGCCCTA-GCCGACGTATCGATCCGACT 657
Query 739 ATAAACCGTGGATACGTGGTTCAGCTTAAGCAAATGTGCCCGATCGGTGTCGACGTAAGA 798
|| || ||||||||||| |||||||||||||||||||||||||||| ||||||||| ||
Sbjct 658 ATTAATAGTGGATACGTGATTCAGCTTAAGCAAATGTGCCCGATCGGAGTCGACGTACGA 717
Query 799 ATCGCAATCAACATGGATCCGACCAGTCCACGTACTTTCGATAATGCTTATTTCAAGAAT 858
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 718 ATTGCAATCAACATGGATCCGACCAGTCCACGTACTTTCGATAATGCTTATTTCAAGAAT 777
Query 859 CTCCAACAAGGAAAGGGTTTGTTCACGTCAGATCAAATCTTGTTCACAGATCAACGGTCA 918
|||||||||||||||||||||||| ||||||||||||||||||| ||||||||||| |||
Sbjct 778 CTCCAACAAGGAAAGGGTTTGTTCTCGTCAGATCAAATCTTGTTTACAGATCAACGATCA 837
Query 919 AGATCTACAGTTAATTCGTTTGCCAATAGTGAAGGAGCTTTTAGACAAGCTTTCATCACA 978
||||||||||||||| | ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 838 AGATCTACAGTTAATACATTTGCCAATAGTGAAGGAGCTTTTAGACAAGCTTTTATCACA 897
Query 979 GCGATCACGAAGTTAGGTCGGGTTGGTGTTTTGACTGGTAATGCTGGTGAGATTCGAAGG 1038
|| ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 898 GCCATCACCAAGTTGGGTCGGGTTGGTGTTTTGACTGGTAATGCTGGTGAGATTCGAAGG 957
Query 1039 GATTGTTCACGTGTCAATTAG 1059
||||||||||||| |||||||
Sbjct 958 GATTGTTCACGTGCCAATTAG 978
> Ahg914052 jgi|Araly1|914052|Al_scaffold_0001_4306
Length=1053
Score = 60.2 bits (32), Expect = 3e-08
Identities = 38/41 (93%), Gaps = 0/41 (0%)
Strand=Plus/Plus
Query 641 TTGCCCTCTCAGGAGCACACACTATAGGATTTGCACATTGT 681
||| |||||||||||||||||||||||||||||| || |||
Sbjct 626 TTGTCCTCTCAGGAGCACACACTATAGGATTTGCTCAATGT 666
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44946919143
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5