BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G30180.1
Length=713
Score E
Sequences producing significant alignments: (Bits) Value
Ahg944978 jgi|Araly1|944978|scaffold_701207.1 800 0.0
> Ahg944978 jgi|Araly1|944978|scaffold_701207.1
Length=511
Score = 800 bits (433), Expect = 0.0
Identities = 492/519 (95%), Gaps = 10/519 (2%)
Strand=Plus/Plus
Query 73 CAGCAAAAATAGTTTCTCATATGGAGAGGCAAATCATAAACAGGAAGAAACGAGTGTTTT 132
|||||||||||||||||||||||||||||||||||||||||| ||||||| |||| ||||
Sbjct 1 CAGCAAAAATAGTTTCTCATATGGAGAGGCAAATCATAAACAAGAAGAAAAGAGTATTTT 60
Query 133 CTCTTGAACCAAACAAGAACCCTAGTGCAGTTTTCACGAGAAAATACACAAGCCACTTGG 192
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 CTCTTGAACCAAACAAGAACCCTAGTGCAGTTTTCACGAGAAAATACACAAGCCACTTGG 120
Query 193 TTCCTGCACTCAAGAAGCTCAACATGAACAAGAACTCTTCAAAACAAACCGTGAAGCATG 252
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TTCCTGCACTCAAGAAGCTCAACATGAACAAGAACTCTTCAAAACAAACCGTGAAGCATG 180
Query 253 AAGTAGATATGGCTTTGGCTTTGTCTGCTCAAGAATTTGCATGGAGCCGTTTCTTGCTGC 312
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 181 AAGTAGACATGGCTTTGGCTTTGTCTGCTCAAGAATTTGCATGGAGCCGTTTCTTGCTAC 240
Query 313 AGAAGCTATCGTCCTC-ATCGAATCCAACCACTACCACTAGTTCTTCTTCCGATGGAATT 371
|||||||||||||||| | |||||||||||||||| ||| | |||||||||||||||||
Sbjct 241 AGAAGCTATCGTCCTCGA-CGAATCCAACCACTACTACT--T-CTTCTTCCGATGGAATT 296
Query 372 CGGATTCTTGAAAGACCCGATAAAGAAGGCGGAAACGAAGAAGGAGGGATAGAGGAGAGA 431
| |||||| |||||| |||||||||||||| ||||||||| || || |||||||||| |
Sbjct 297 CAGATTCTCGAAAGATCCGATAAAGAAGGCCGAAACGAAGGAG-AG--ATAGAGGAGAAA 353
Query 432 CTGAGGGAATTGA-AGAAGCTTTTGCCAGGTGGGGAAGAGATGAATGTGGAAGAAATGTT 490
||||||||||| | ||| ||||||||||||||| ||||||||||||||||||||||||||
Sbjct 354 CTGAGGGAATT-ACAGACGCTTTTGCCAGGTGGAGAAGAGATGAATGTGGAAGAAATGTT 412
Query 491 GAGTGAGATTGGTAACTACATTAAATGTCTTGAGTTGCAGACGATTGCTCTCAAGTCCAT 550
||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 413 GAGTGAGATTGGTAATTACATTAAATGTCTTGAGTTACAGACGATTGCTCTCAAGTCCAT 472
Query 551 TGTTCAAGATAGTACTTGACTTTTAGTTTAAGTGTATAA 589
||||||||||||||||||||||||||||||||||| |||
Sbjct 473 TGTTCAAGATAGTACTTGACTTTTAGTTTAAGTGTGTAA 511
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26228566896
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5