BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G30200.2
Length=2662
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491730 jgi|Araly1|491730|fgenesh2_kg.7__1163__AT4G30200.2 3892 0.0
> Ahg491730 jgi|Araly1|491730|fgenesh2_kg.7__1163__AT4G30200.2
Length=2574
Score = 3892 bits (2107), Expect = 0.0
Identities = 2452/2609 (94%), Gaps = 61/2609 (2%)
Strand=Plus/Plus
Query 80 tctctctctctctctctctctctctctcttctcCGGTGTATTCCGTTCTCCGGGAATTTC 139
||||||||||||||||||||||||||||||||| |||||| ||||||||||||||| |||
Sbjct 1 TCTCTCTCTCTCTCTCTCTCTCTCTCTCTTCTCTGGTGTA-TCCGTTCTCCGGGAAGTTC 59
Query 140 TCCGAAGAGGGAGAGAGGaaaaaaaaaaCGTCCGATTCAATCTCTTCGTTGCTCGACGAA 199
|||||||||||||||| | |||||||| ||| |||||||| || || | | ||||||
Sbjct 60 TCCGAAGAGGGAGAGA-G-AAAAAAAACCGTTCGATTCAA--TC-TC--T--T-GACGAA 109
Query 200 TTTTTCTTAAGCTTTCCTTATTGGAGATTTGAAGATTCTGAGTGGTTG-T-T-ATGATAA 256
|||||||||||||||||||||||| ||||||||||||||||||||||| | | |||||||
Sbjct 110 TTTTTCTTAAGCTTTCCTTATTGGGGATTTGAAGATTCTGAGTGGTTGTTATGATGATAA 169
Query 257 TGTGGGTTTGATTAGTTCTTCACACACAGCTTCTCTACGCTCATGGATTCTTCTCTCGAT 316
|||||||||||||||||||| |||| ||||||||||| |||||||||||||| |||
Sbjct 170 TGTGGGTTTGATTAGTTCTT----GACAGTTTCTCTACGCTAATGGATTCTTCTCTGGAT 225
Query 317 GGAGCTGCAGGTGACTCATCGAAATGCAGTGAAATGAGTGTTGATGAGAAGAGACAGCTT 376
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 226 GGAGCTGCAGGTGACTCATCGAAATGCGGTGAAATGAGTGTTGATGAGAAGAGACAGCTT 285
Query 377 GTTTATGAACTGTCGAAGCAATCACATCTAGCTGCTGAGGTCTTGCAGGCATGGAGCCGC 436
||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 286 GTTTATGAACTTTCGAAGCAATCACATCTAGCTTCTGAGGTCTTGCAGGCATGGAGCCGG 345
Query 437 CAAGAGATTCTACAGATCTTATGCGCAGAAATGGGAAAAGAAAGGAAGTATACTGGTTTG 496
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 346 CAAGAGATTCTACAGATCTTATGCGCAGAAATGGGAAAAGAAAGGAAGTATACTGGCTTG 405
Query 497 ACCAAAGTCAAGATCATCGAGACCCTTTTGAAAATTGTATCTGAGAAAAACTCTGGAGAG 556
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 406 ACCAAAGTCAAGATCATCGAGACCCTTTTGAAAATTGTATCCGAGAAAAACTCTGGAGAG 465
Query 557 TGTGAAGGGAAGAAGAGAGATTCTGATTGTTTGCCTATTCAGAGAAACACTAAGAGACAA 616
||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 466 AATGAGGGGAAGAAGAGAGATTCTGATTGTTTGCCTATTCAGAGAAACACAAAGAGACAA 525
Query 617 AGGAAGGTTGATAATCCTTCTCGGTATGTGATTCCAGCAACCAACATTGTAACAAGCAAC 676
|||||||| ||||||||||||||||||||| ||||||||| ||||| ||||||||||||
Sbjct 526 AGGAAGGTCGATAATCCTTCTCGGTATGTGCTTCCAGCAAGCAACAACGTAACAAGCAAC 585
Query 677 AATGCCTCAGGGAGCTGCAGCTCGGTTAATACTAAAGGTGAGAGTACTACCATCTACTGC 736
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 586 AATGCCTCAGGGAGCTGCAGCTCGGTTAATACTAAAGGTGAGAGTACT---ATCTACTGC 642
Query 737 AAAAATTTGGCTTGTCGTGCTGTACTGAGACAGGAAGACTCGTTTTGCAGAAGGTGTTCA 796
|| || |||||||| ||||||||| |||||||||||||||| |||||||||||||||||
Sbjct 643 AAGAACTTGGCTTGCCGTGCTGTAATGAGACAGGAAGACTCATTTTGCAGAAGGTGTTCC 702
Query 797 TGTTGCATCTGTCGTAAGTATGATGATAACAAAGATCCTAGTCTCTGGTTAACATGTAGC 856
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 703 TGTTGCATCTGTCGTAAGTATGATGATAACAAAGATCCTAGTCTCTGGTTAACATGTAGC 762
Query 857 TCAGATCCTCCATTTGAGGGTGAGTCTTGCGGATTCTCGTGTCATCTTGAATGTGCTTTC 916
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 763 TCAGATCCTCCATTCGAGGGTGAGTCTTGCGGATTCTCGTGTCATCTTGAATGTGCTTTC 822
Query 917 AACACTGAAAAATCCGGTCTTGGAAAAGACAAGCAAAGTGAGGGATGCTGCTTCTATTGT 976
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 823 AAGACTGAAAAATCCGGTCTTGGAAAAGACAAGCAAAGTGAGGGATGCTGCTTCTATTGT 882
Query 977 GTCTCTTGCGGTAAAGCAAACAGTTTGCTTGAATGCTGGAAGAAGCAATTGACGATTGCT 1036
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 883 GTCTCTTGCGGTAAAGCAAACAGTTTGCTTGAATGTTGGAAGAAGCAATTGACGATTGCT 942
Query 1037 AAAGAAACCAGAAGGGTAGAAGTGCTTTGTTACCGTCTTTTCTTAGTCCAGAAACTATTG 1096
|||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 943 AAAGAAACCAGAAGGGTAGATGTGCTTTGTTACCGTCTTTTCTTAGTTCAGAAACTATTG 1002
Query 1097 AAGAGCTCAACTAAATACCGAAATCTGTGTGA-GGTTGTGGATGAAGCTGTCAAGACTCT 1155
||||||||||||||||||||| |||||||| | ||||||||||||||||||||||| |||
Sbjct 1003 AAGAGCTCAACTAAATACCGAGATCTGTGT-ATGGTTGTGGATGAAGCTGTCAAGAGTCT 1061
Query 1156 TGAAGCTGATGTGGGTCCTCTCACTGGTCTTCCTATGAAAATGGGTAGAGGAATTGTAAA 1215
|||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1062 TGAAGCTGATGTAGGTCCTCTCACTGGTCTCCCTATGAAAATGGGTAGAGGAATTGTAAA 1121
Query 1216 CAGACTTCATTCGGGACCCGATGTGCAGAAACTTTGCTCTTCTGCTCTTGAATCTCTTGA 1275
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1122 CAGACTTCATTCGGGACCCGATGTGCAGAAACTTTGCTCTTCTGCTCTTGAATCTCTTGA 1181
Query 1276 AACTATAGCAACTACACCTCCTGATGTTGCTGCATTACCTTCACCTCGCAGCTCCAAGAT 1335
|||| |||||||| ||||||| ||||||||||||||||||||| ||||||||||||||||
Sbjct 1182 AACTCTAGCAACTGCACCTCCGGATGTTGCTGCATTACCTTCATCTCGCAGCTCCAAGAT 1241
Query 1336 GCAGCAAGATTGTTCTTATGTATTGAGCAATGAGATATCTGCAGATACAGCAACCACAGG 1395
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1242 TCAGCAAGATTGTTCTTATGTATTGAGCAATGAGATATCTGCAGATACAGCAACCACAGG 1301
Query 1396 ATCAACCAAGATCAGGTTCGAGGATGTAAACGCGACTTCACTTACAGTGGTTCTCGCCTC 1455
||||||||||||||||||||||||||| |||||||||||||| ||||||||||| |||||
Sbjct 1302 ATCAACCAAGATCAGGTTCGAGGATGTTAACGCGACTTCACTCACAGTGGTTCTAGCCTC 1361
Query 1456 TAATGAAATTCCCTCACCTCCAAACATCGTTCACTACAGTATTTGGCATCGTAAGGTACC 1515
|||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||
Sbjct 1362 TAATGAAATTCCCTCACCTCCAAACATCGTCCACTACAGTATTTGGCATCGCAAGGTACC 1421
Query 1516 AGAAAAAGATTACCCGGAGAAATCGACTTGCACATTGTTTATTCCAAACACAAGATTTGT 1575
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1422 AGAAAAAGATTACCCGGAGAAATCGACTTGCACATTGTTTACTCCAAACACAAGATTTGT 1481
Query 1576 TGTCTCTGGATTAGCTCCAGCTTCTGAGTACTGCTTCAAAGTTGTGTCCTATAGTGGAAC 1635
|||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 1482 TGTCTCTGGATTAGCTCCAGCTTCCGAGTATTGCTTCAAAGTTGTGTCCTATAGTGGAAC 1541
Query 1636 CAGAGAAATGGGCGTTGATGAAATCAATGTTTTGACACGTAGCGCTGAAGAAGGAGCGAA 1695
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1542 CAGAGAAATGGGCGTCGATGAAATCAATGTTTTGACACGTAGCGCTGAAGAAGGAGCGAA 1601
Query 1696 TTGCTCTTCGGCAGTGGAAAGAAGCGTAAGCCCTCTCACAAATTGCAGCACATTGTCTTC 1755
||||||||||| ||| |||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1602 TTGCTCTTCGGGAGTCGAAAGAAGCGAAAGCCCTCTCACAAATTGCAGCACATTGTCTTC 1661
Query 1756 TAATCCTTCTTCTGTTGAAGCTGAGTCCAACAACGATTACATTGTCCCAAAGAAGCCATC 1815
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1662 TAATCCTTCTTCTGTGGAAGCTGAGTCCAACAACGATTACATTGTCCCAAAGAAGCCATC 1721
Query 1816 TTCAAAGAACGA-AGACAACAATTCTCCTTCAGTCGATGAAAGTGCTGCGAAAAGGATGA 1874
||||||||| | ||||||||||||||||||| |||||||||||||| |||||| ||
Sbjct 1722 ---AAAGAACGACA-ACAACAATTCTCCTTCAGTTGATGAAAGTGCTGCTAAAAGGGCGA 1777
Query 1875 AGAGGACAACCGACTCAGACATTGTACAGATTGAGAAGGACGTTGAGCAGATTGTGTTGT 1934
||||||||||||| ||||||||||||||||| ||||| ||||||| |||||||||||||
Sbjct 1778 AGAGGACAACCGAATCAGACATTGTACAGATAGAGAATAACGTTGAACAGATTGTGTTGT 1837
Query 1935 TGGATGATGAAGAACAAGAAGCTGTTCTGGATAAGA-CGGA--A---TC----T--G-A- 1980
|||| || |||||||||||||||||||| ||||||| |||| | || | | |
Sbjct 1838 TGGAGGAGGAAGAACAAGAAGCTGTTCTCGATAAGAACGGATCAGGATCCGGATCCGGAT 1897
Query 1981 ---AA-CTCCAGTCGTGGTTACTACGAAAAGTCTTGTTGGTAATCGAAACAGTTCAGATG 2036
|| |||||| | ||||||||||||||| ||||| | |||||||||||| ||||||||
Sbjct 1898 CTGAAACTCCAGCCCTGGTTACTACGAAAAATCTTGCTAGTAATCGAAACAATTCAGATG 1957
Query 2037 CGAGTTTGCCAATTACTCCCTTCAGGTCAGATGAAATCAAGAACCGTCAAGCTAGAATCG 2096
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1958 CGAGTTTGCCAATTACTCCCTTCAGGTCAGATGAAATCAAGAACCGTCAAGCTAGAATCG 2017
Query 2097 AAATATCGATGAAAGACAACTGTAACAACGGTGATCATTCAGCGAATGGAGGAACAGAAA 2156
||| |||| | ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 2018 AAAAATCGGTTAAAGACAACTGTAACAACGGTGATCATTCAGCGAATGGAGGAACAGAGA 2077
Query 2157 GTGGATTAGAGCATTGTGTGAAGATCATAAGACAACTCGAGTGTTCAGGACATATCGATA 2216
||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||| |
Sbjct 2078 GTGGACTAGAGCATTGTGTGAAGATCATAAGACAGCTCGAGTGTTCAGGACATATCGACA 2137
Query 2217 AGAATTTCAGACAGAAGTTTCTGACTTGGTATAGCTTGAGAGCAACGTCACAAGAGATTA 2276
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 2138 AGAATTTCAGACAGAAGTTTCTGACTTGGTATAGCTTAAGAGCAACGTCACAAGAGATTA 2197
Query 2277 GAGTTGTGAAGATATTCATTGATACATTTATTGATGATCCCATGGCTTTGGCTGAGCAGC 2336
||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||
Sbjct 2198 GAGTTGTGAAGATATTCATTGATACGTTTATTGATGATCCCATGGCTTTAGCTGAGCAGC 2257
Query 2337 TCATTGATACTTTCGACGACCGTGTTTCGATAAAGCGTTCTGCGGTTGGTGGTAGCGGTG 2396
|||| ||||||||||||||||| ||||||||||||||||||||| |||||||||||||||
Sbjct 2258 TCATAGATACTTTCGACGACCGCGTTTCGATAAAGCGTTCTGCGATTGGTGGTAGCGGTG 2317
Query 2397 CGTCTGCAGTTGTTCCATCTGGATTCTGTATGAAGTTGTGGCATTAGAGAATGGGAACTT 2456
||||||| |||||||||||||||||||||||||||||||||||||||||| |||| | |
Sbjct 2318 CGTCTGCGGTTGTTCCATCTGGATTCTGTATGAAGTTGTGGCATTAGAGA-TGGGGAGAT 2376
Query 2457 GTGCTCTGttttttt--CAAGTCATTTTCAAAACGTTATTCTAATTATTGGGAAATTTGC 2514
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 2377 -TGCTCTGTTTTTTTTTCAAGTCATTTTCAAAACGTTATTCTAATTATTGGGAAATTTGC 2435
Query 2515 ATTATTGGAACATTTCCATGCAAGAACAGTAGTACTGTTGCTATCGAATAGATCGTCTTT 2574
||||||||||||||||||||||||||||||||||||||||||||||||||| | || |||
Sbjct 2436 ATTATTGGAACATTTCCATGCAAGAACAGTAGTACTGTTGCTATCGAATAGTTTGT-TTT 2494
Query 2575 GTCGGATTATTTATTT-ATTTTTAGTGGATTTGATTCCATTTATAATTTAGTAATTAGTC 2633
|||||||||||||||| ||||| | |||||||||||||||||||||||||||| |
Sbjct 2495 GTCGGATTATTTATTTTATTTT-A-TGGATTTGATTCCATTTATAATTTAGTA------C 2546
Query 2634 CTAGACTGAATTATTCTTATTTCGTTGAC 2662
|||||||||||||| | |||||||||||
Sbjct 2547 -TAGACTGAATTATTATAATTTCGTTGAC 2574
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 100405885820
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5