BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G30220.2

Length=530
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg944969 jgi|Araly1|944969|scaffold_701198.1                        420    6e-117
  Ahg931158 jgi|Araly1|931158|scaffold_303615.1                        381    3e-105


> Ahg944969 jgi|Araly1|944969|scaffold_701198.1
Length=312

 Score =  420 bits (227),  Expect = 6e-117
 Identities = 247/257 (96%), Gaps = 0/257 (0%)
 Strand=Plus/Plus

Query  133  ATTCCGGTTAACCCGAAACCATTCTTGAACAACTTGACCGGCAAGACTGTTATCGTCAAG  192
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  35   ATTCCGGTTAACCCGAAACCATTCTTGAACAACTTGACCGGCAAGACTGTTATCGTCAAG  94

Query  193  CTTAAATGGGGAATGGAATACAAAGGTTTTCTCGCCTCTGTTGACTCCTACATGAACTTG  252
            ||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct  95   CTTAAATGGGGAATGGAATACAAAGGTTTCCTTGCCTCTGTTGACTCCTACATGAACTTG  154

Query  253  CAGCTGGGAAACACCGAAGAATATATTGATGGACAATTGACAGGGAACCTTGGAGAGATC  312
            ||||||||||||||||| ||||| || |||||||||||||||||||||||||||||||||
Sbjct  155  CAGCTGGGAAACACCGAGGAATACATCGATGGACAATTGACAGGGAACCTTGGAGAGATC  214

Query  313  TTGATCAGGTGCAACAATGTTTTGTATGTCCGTGGTGTGCCAGAAGATGAAGAGCTTGAA  372
            |||||||| ||||||||||| ||||||||||| |||||||||||||||||||| ||||||
Sbjct  215  TTGATCAGATGCAACAATGTCTTGTATGTCCGAGGTGTGCCAGAAGATGAAGAACTTGAA  274

Query  373  GACGCTGATCAAGACTA  389
            || ||||||||||||||
Sbjct  275  GATGCTGATCAAGACTA  291


> Ahg931158 jgi|Araly1|931158|scaffold_303615.1
Length=311

 Score =  381 bits (206),  Expect = 3e-105
 Identities = 240/257 (93%), Gaps = 0/257 (0%)
 Strand=Plus/Plus

Query  139  GTTAACCCGAAACCATTCTTGAACAACTTGACCGGCAAGACTGTTATCGTCAAGCTTAAA  198
            ||||||||||||||||||||||||||||||||||| ||||| |||||||| |||||||||
Sbjct  36   GTTAACCCGAAACCATTCTTGAACAACTTGACCGGGAAGACGGTTATCGTTAAGCTTAAA  95

Query  199  TGGGGAATGGAATACAAAGGTTTTCTCGCCTCTGTTGACTCCTACATGAACTTGCAGCTG  258
            ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct  96   TGGGGAATGGAATACAAAGGTTTTCTCGCTTCTGTTGACTCCTACATGAACTTGCAGCTG  155

Query  259  GGAAACACCGAAGAATATATTGATGGACAATTGACAGGGAACCTTGGAGAGATCTTGATC  318
            ||||||||||| ||||| || ||||| ||||||||||| |||||||||||||||||||||
Sbjct  156  GGAAACACCGAGGAATACATCGATGGGCAATTGACAGGAAACCTTGGAGAGATCTTGATC  215

Query  319  AGGTGCAACAATGTTTTGTATGTCCGTGGTGTGCCAGAAGATGAAGAGCTTGAAGACGCT  378
            || |||||||| || ||||||||||| ||  |||||||||||||||| |||||||| |||
Sbjct  216  AGATGCAACAACGTCTTGTATGTCCGAGGCATGCCAGAAGATGAAGAACTTGAAGATGCT  275

Query  379  GATCAAGACTAACCTGT  395
            |||||||||||||||||
Sbjct  276  GATCAAGACTAACCTGT  292



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19306728034


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5