BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G30230.1
Length=1081
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491728 jgi|Araly1|491728|fgenesh2_kg.7__1161__AT4G30230.1 1371 0.0
> Ahg491728 jgi|Araly1|491728|fgenesh2_kg.7__1161__AT4G30230.1
Length=1079
Score = 1371 bits (742), Expect = 0.0
Identities = 973/1080 (90%), Gaps = 34/1080 (3%)
Strand=Plus/Plus
Query 32 atggaaactacaaaaaacactaatctccaaaa-cc--ctactaaactcccaaaacCATTT 88
||||||||| ||||||||| ||||||||||| || |||||||||||||||||||||||
Sbjct 1 ATGGAAACTTTAAAAAACACCAATCTCCAAAACCCTACTACTAAACTCCCAAAACCATTT 60
Query 89 CAACATCACCTAGAAGAAGAAAAAGAAGACGCACTATCTCTCCGAGATCTTCCCCTCAAA 148
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 61 CAACATCACCTAGAAGAAGAAAAAGAAGAAGCACTATCTCTCCGAGATCTTCCCCTCAAT 120
Query 149 GCCAAGAATCCTAAT-----------CCC-ACCACCACCGAAGACCACAAAGAACCGTCA 196
||| |||| |||||| ||| |||||||||||||||||| |||||||||
Sbjct 121 GCCGAGAACCCTAATCCCACCGCCACCCCAACCACCACCGAAGACCACCGTGAACCGTCA 180
Query 197 ACGGAACTTTTTGAGTTTCTAACCTCATCCTCCTACGACGTAGCTCCGGCAGAAAATATA 256
|||||||||||||||||||| || ||| ||||||||||||| ||||||||||||| |||
Sbjct 181 ACGGAACTTTTTGAGTTTCTTACGTCAACCTCCTACGACGTTTCTCCGGCAGAAAACATA 240
Query 257 ATCTTTGGCGGGAAACTCATCCCTTTAAACTACCAAAATGCTTTCTTTTCACCTCCTGAG 316
||||||||||| ||||||||||||||||||||||||||||| ||||||||||||| ||
Sbjct 241 ATCTTTGGCGGCAAACTCATCCCTTTAAACTACCAAAATGCCCTCTTTTCACCTCCCGAA 300
Query 317 CACATTAGCCGTCGAATCCGTTCACGGTCTGAGTCCTTATCCGCGATACAAGGCCATAAG 376
|||||||||| |||||| ||| |||||||||||||||||||||| |||||||||||||||
Sbjct 301 CACATTAGCCCTCGAATTCGTGCACGGTCTGAGTCCTTATCCGCCATACAAGGCCATAAG 360
Query 377 CTTAACCGTCCCGGTAGTTGTACCGTGGCACGTCGTGACAATGCGGGACCTATGAGGGCA 436
||||||||||| ||||||||| | ||||||||||||||||||||||||||||||||| ||
Sbjct 361 CTTAACCGTCCAGGTAGTTGTTCTGTGGCACGTCGTGACAATGCGGGACCTATGAGGACA 420
Query 437 AGCCGCTCTTTAGATTATCGTAAGCTTTCACGTGGTCTAACCACCGTACATTCTCCACCG 496
||||| ||||||||||| |||||||| |||||||||| ||||||||||||||||||||||
Sbjct 421 AGCCGTTCTTTAGATTACCGTAAGCTCTCACGTGGTCCAACCACCGTACATTCTCCACCG 480
Query 497 GAAAATAGTTCATCGACTAAAAACACGGGGAAGCCTGAAACAACGTCTTCGGGAAGTGTA 556
||||| | |||| || ||||||||||| |||| ||||||| |||| ||||||||||
Sbjct 481 GAAAACATTTCACCGGCTAAAAACACGACGAAGGCTGAAACGGCGTCGTCGGGAAGTGGG 540
Query 557 AAAAGTGTAAGGCCAAGATGGTATGTGATCATGTTTGGAATGGTTAAGTTTCCGCCGGAG 616
||| |||||||||||||||||||||||||||||||||||||||||||||| || ||||||
Sbjct 541 AAATGTGTAAGGCCAAGATGGTATGTGATCATGTTTGGAATGGTTAAGTTCCCTCCGGAG 600
Query 617 ATCGAACTCAAGGATATAAAGAGCCGTCAGATTCGCCGGAATATTCCACCGGTTATGTTT 676
||||||||||||||||| |||||||| ||| |||||||||||||||||||||||||||||
Sbjct 601 ATCGAACTCAAGGATATCAAGAGCCGCCAGGTTCGCCGGAATATTCCACCGGTTATGTTT 660
Query 677 CCATCTCCTGCTAACAGGAGAGCTCGTGGATCTCG------GTCGCCATCACCGTCACCT 730
||||||||||||||| ||||| ||||| ||||||| ||| || ||||| ||||||
Sbjct 661 CCATCTCCTGCTAACCGGAGATCTCGTAGATCTCGATCACCGTCACCGTCACCTTCACCT 720
Query 731 TCTTGGAGGTTTCTCAACGCTTTAAGTTGCAAGAAGCCCACAAGCGTGGCTGCTACGGCG 790
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 721 TCTTGGAGGTTTCTCAACGCTTTAAGTTGCAAGAAGCCCACAAGCGTGGCTGCTACGGCG 780
Query 791 CCGTTTTGGGTTCCTCATCCATAAATTACTATATTATTCCTACGAACATTGTGCGCGGTT 850
||||||||| |||| ||| |||||||||||||||||| |||| |||||||||| |||||
Sbjct 781 CCGTTTTGGATTCCCCATTCATAAATTACTATATTATCCCTATGAACATTGTGTGCGGT- 839
Query 851 ACTTGCTCTGCCGTTGATTAAGAAGGATAGGATCGTCATTTAGTATAAGAAATATCGATA 910
||||||| |||||||| |||| |||||||||| |||||||||| ||||||||||||||||
Sbjct 840 ACTTGCTTTGCCGTTGTTTAAAAAGGATAGGAACGTCATTTAGCATAAGAAATATCGATA 899
Query 911 TTGTT-AATTTATTTTGTGAAAGAATGTCGAAATTGTAATTTATTTGGTGAATCGATAAT 969
||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 900 TTGTTTAATTTATTTTGTGAAAGAATGTCGATATTGTAATTTATTTGGTGAATCGATAAT 959
Query 970 AGTTTGGACCATAACACATCTTATTCACACCttttt-ctttttctttgattttttcgtta 1028
|||||||||||||| | ||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 960 AGTTTGGACCATAATATATCTTATTCACACTTTTTTTCTTTTTCTTTGATTTTTTCGTTA 1019
Query 1029 ttttgtattt-------cagctcattt---agaatatttcaatatatattttAATAAAAT 1078
|||||||||| |||||||||| |||||||||||||||||||||||||| |||
Sbjct 1020 TTTTGTATTTTGTATTTCAGCTCATTTGTTAGAATATTTCAATATATATTTTAATATAAT 1079
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40257800352
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5