BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G30240.1
Length=1497
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491727 jgi|Araly1|491727|fgenesh2_kg.7__1160__AT4G30240.1 1857 0.0
Ahg343087 jgi|Araly1|343087|fgenesh1_pg.C_scaffold_3002850 324 1e-87
Ahg906822 jgi|Araly1|906822|Al_scaffold_0003_3950 272 5e-72
> Ahg491727 jgi|Araly1|491727|fgenesh2_kg.7__1160__AT4G30240.1
Length=1449
Score = 1857 bits (1005), Expect = 0.0
Identities = 1340/1487 (90%), Gaps = 81/1487 (5%)
Strand=Plus/Plus
Query 38 aaaaataaaaacagaaagctggaggaagaaaaaataaaaaTTCCTTCTTTCCTCCTGAAG 97
|||||||||||| ||||||| ||||| |||||||||||||||||||||||| |||||
Sbjct 1 AAAAATAAAAACGGAAAGCT---GGAAG-AAAAATAAAAATTCCTTCTTTCCTTCTGAA- 55
Query 98 GCAAAAaaggaagagaagagaagagaagagaaggaagcagaaTCTAATTTTGGATTATAA 157
|||||||||| | |||||||||||| ||||||||||| ||||||||| |||||||| |||
Sbjct 56 GCAAAAAAGG-A-AGAAGAGAAGAGCAGAGAAGGAAGTAGAATCTAA-TTTGGATTTTAA 112
Query 158 TCGGAGAGAGAATCTATTCCGACGAATCTTTTCGGGTTGA--T---TTTTTG--G----T 206
||||||||||||||||||||||||||| |||| ||||||| | |||||| | |
Sbjct 113 TCGGAGAGAGAATCTATTCCGACGAAT-TTTTTGGGTTGATTTGGATTTTTGTCGATTTT 171
Query 207 C------T-TTAATTTGAAGGGTTTAGGTGTGGTTTCGAAGATGATGGTAGCGAATAGTT 259
| | ||||||||| |||||| |||||||||||||||||||||||||| ||||| |
Sbjct 172 CGTTTAGTCTTAATTTGAGGGGTTTTGGTGTGGTTTCGAAGATGATGGTAGCTAATAGCT 231
Query 260 TCGATCTATGGCAAAAGGATGtttttttCTCTGCAGCTGAGGAGGTTCAAGAATCTGCTG 319
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 232 TCGATCTATGGCAAAAAGATGTTTTTTTCTCTGCAGCTGAGGAGGTTCAAGAATCTGCTG 291
Query 320 ATATAATGGAATCTGCGTATAGGTTGTGGTTTAAAGAGAAGAGAGACGGTCGAGTATCCG 379
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 292 ATATAATGGAATCTGCGTATAGGTTGTGGTTTAAACAGAAGAGAGACGGTCGAGTAACCG 351
Query 380 TAGAATCAGACGAGCTCTGCAAAGAACTCCAAGCTGCTTTGAGCACTGCTAAATGGCAGT 439
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 352 TCGAATCAGACGAGCTCTGCAAAGAACTCCAAGCTGCTTTGAGCACTGCTAAATGGCAGT 411
Query 440 TGGAAGAGTTTGAGAGGGCAGTGAGCTTAAGCCATGGAAATTGTCGAGATGACACTACCT 499
||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 412 TGGAAGAGTTTGAGAGGGCAGTGAGGTTGAGCCATGGAAATTGTCGAGATGACACTACCT 471
Query 500 TAACTAGGCATAAACAGTTTGTTACCGCTATTGAAAACCAGATTTATCAAGTGGAATCTA 559
|||||||||||||||||||||||||||||||||||||||||||||||| ||| || |||
Sbjct 472 TAACTAGGCATAAACAGTTTGTTACCGCTATTGAAAACCAGATTTATCGAGTAGAGTCTT 531
Query 560 CTCTGCTAGAGTCGTTAAGCGAGAATGGGAAACAACCTTTGCGTTGGGTGGATCTTAACA 619
|||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 532 CTCTGCAAGAGGCGTTAAGCGAGAATGGGAAACAACCTTTGCGTTGGGTGGATCTTAACA 591
Query 620 AAGAAGAGCGTGATGATCTCGCCATGTTTCTATCTGGATCTTCTCAGACGTCAGAGAGTT 679
|||||||||||||||| || ||||||||||||||||||||||||||||| ||||||||||
Sbjct 592 AAGAAGAGCGTGATGACCTTGCCATGTTTCTATCTGGATCTTCTCAGACATCAGAGAGTT 651
Query 680 TAAACAGTGATAGCATCAACTTGAGAGATTCCTCAACGAGTTCTGTAGCTGAGAATCCAC 739
|||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||
Sbjct 652 TAAACAGTGATAGCATTAACTTGAGAGATTCCTCAACGAGTTCTGTAGCTGAGATTCCAC 711
Query 740 GTGGGATCAATGGCAGAAGAGAGGGTAGATGTTATGGCGACAGTCCTGATTGTGTGATAG 799
||||||| ||||||||| ||||| |||||||||||| || |||||||| ||||||||||
Sbjct 712 GTGGGATGAATGGCAGACGAGAGACTAGATGTTATGGTGATAGTCCTGACTGTGTGATAG 771
Query 800 ACATTGACGACATAGGAAGTCCGGAAAGTG------C-A-GAT--------AA-A--A-A 839
|||||||||| | ||||||||| ||||||| | | ||| || | | |
Sbjct 772 ACATTGACGAGAGAGGAAGTCCTGAAAGTGGTGATGCTATGATCCGCGTTCAAGATGATA 831
Query 840 AG---GC-GGTACAAGAAGAACATGGAGTTCACCAAATGTACCAAATATCAGTGCGTTGA 895
| || ||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 832 AAAAAGCCGGTACAAGAAGAACATGGAGTTCACCAAATGTACCGAATATCAGTGCGTTGA 891
Query 896 GGATTAATGTCCCTGTTAATGCAAAAGAAGAAGAGAGGGAGAAGTTCCTATCACATATTG 955
|||||||||| ||| |||||||||||||||||||||| ||||||||||| ||||| || |
Sbjct 892 GGATTAATGTTCCTTTTAATGCAAAAGAAGAAGAGAGAGAGAAGTTCCTGTCACAAATCG 951
Query 956 AAGACACTCCTAAAGAGAAAGGAGCTAAACCTATGTTTTGGCTGCAGAGATGTCGTGATT 1015
|||||||||||||||| |||||| |||||||| |||||||||||||||||||||||||||
Sbjct 952 AAGACACTCCTAAAGAAAAAGGATCTAAACCTCTGTTTTGGCTGCAGAGATGTCGTGATT 1011
Query 1016 ATAACCAGCTCTTTGACAGAGTCAAGGTTTATCAAAGACGATTTCGCGTTCCATTGAGCC 1075
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||
Sbjct 1012 ATAACCAGCTCTTTGACAGAGTCAAGGTTTATCAAAGACGATTTCGTGTTCCATTGACCC 1071
Query 1076 GCCCTATTAAGCTCATTCTTTCCTTAACGCTAATCTTGATTCTTCTATTATTCATCTTGA 1135
|||| |||||||||||||||||||||||||| |||||| |||||||||||||||||||||
Sbjct 1072 GCCCGATTAAGCTCATTCTTTCCTTAACGCTGATCTTGTTTCTTCTATTATTCATCTTGA 1131
Query 1136 GAACTTAAAACCGCGGTTTCAGAAACTCTCAAGAAACATTGACAGGTTTTTTCACAGATT 1195
||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1132 GAACTTAAA-CCGCGGTTTCAGAAACTCTCAAGAAACATTGACAGGTGTTTTCACAGATT 1190
Query 1196 CTTGCGTATTGGGTTACACACTCGTTAGATGCTACATGATTCAACATCCTTCGAGGGAAG 1255
|||| | | | | | | | | | |||||||||||||||||| ||| |||
Sbjct 1191 CTTG--T---G--T-A-A---T-G---G--G--ACATGATTCAACATCCTTAGAG--AAG 1228
Query 1256 GAGGAGAGATTAAAAGACTTTGTCAAGATTCAAATGAAGGACAAAGC-CTGATTTATTAC 1314
|| ||||||||| ||| ||||||||||||||||| |||||||||| | ||| ||||||||
Sbjct 1229 GAAGAGAGATTAGAAG-CTTTGTCAAGATTCAAAAGAAGGACAAA-CTCTGCTTTATTAC 1286
Query 1315 TCTCTCTTAATCCTCAGGGAACATATAGGAACCTGTAAATTTGTAAGATCAATTTGTAAA 1374
||||||||| |||| ||||||||||||||||| |||| ||||||||||||||| ||||||
Sbjct 1287 TCTCTCTTA-TCCTTAGGGAACATATAGGAACTTGTATATTTGTAAGATCAATATGTAAA 1345
Query 1375 ACTTGAAGCTACGACGTTTCGTTAAACTTTAGACGTGTACCTAAAGGAAACCAATGCGTG 1434
||||||||||||| |||||| |||| ||||||||||||||||||||||||||||||||
Sbjct 1346 ACTTGAAGCTACG---TTTCGTAAAACGTTAGACGTGTACCTAAAGGAAACCAATGCGTG 1402
Query 1435 TTTGTGCTCAATGATATCTCCAGTGTTTGTTTGTCTCTCAGATATTT 1481
|||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1403 TTTGTGTTCAATGATATCTCCAGTGTTTGTTTGTCTCTCAGATATTT 1449
> Ahg343087 jgi|Araly1|343087|fgenesh1_pg.C_scaffold_3002850
Length=1026
Score = 324 bits (175), Expect = 1e-87
Identities = 210/227 (93%), Gaps = 2/227 (1%)
Strand=Plus/Plus
Query 800 ACATTGACGACATAGGAAGTCCGGAAAGTGCAGATAAAAAAGGC-GGTACAAGAAGAACA 858
|||||||||| | |||||||| ||||||| ||| |||||||| ||||||||||||| |
Sbjct 713 ACATTGACGAGAGAGGAAGTCTTGAAAGTGGTGAT-AAAAAGGCTGGTACAAGAAGAAGA 771
Query 859 TGGAGTTCACCAAATGTACCAAATATCAGTGCGTTGAGGATTAATGTCCCTGTTAATGCA 918
|||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||
Sbjct 772 TGGAGTTCACCAAATGTACCGAATATCAGTGCGTTGAGGATTAATGTTCCTGTTAATGCA 831
Query 919 AAAGAAGAAGAGAGGGAGAAGTTCCTATCACATATTGAAGACACTCCTAAAGAGAAAGGA 978
|||||||||||||||||||||||||| ||||| || ||||||||||||||||| ||||||
Sbjct 832 AAAGAAGAAGAGAGGGAGAAGTTCCTGTCACAAATCGAAGACACTCCTAAAGAAAAAGGA 891
Query 979 GCTAAACCTATGTTTTGGCTGCAGAGATGTCGTGATTATAACCAGCT 1025
|||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 892 TCTAAACCTCTGTTTTGGCTGCAGAGATGTCGTGATTATAACCAGCT 938
Score = 268 bits (145), Expect = 6e-71
Identities = 157/163 (96%), Gaps = 0/163 (0%)
Strand=Plus/Plus
Query 574 TTAAGCGAGAATGGGAAACAACCTTTGCGTTGGGTGGATCTTAACAAAGAAGAGCGTGAT 633
|||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 547 TTAAACGAGAATGGGAAACAACCTTTGCGTTGGGTGAATCTTAACAAAGAAGAGCGTGAT 606
Query 634 GATCTCGCCATGTTTCTATCTGGATCTTCTCAGACGTCAGAGAGTTTAAACAGTGATAGC 693
|| || ||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 607 GACCTTGCCATGTTTCTATCTGGATCTTCTCAGACATCAGAGAGTTTAAACAGTGATAGC 666
Query 694 ATCAACTTGAGAGATTCCTCAACGAGTTCTGTAGCTGAGAATC 736
||||||||||||||||||||||||||||||||||||||| |||
Sbjct 667 ATCAACTTGAGAGATTCCTCAACGAGTTCTGTAGCTGAGTATC 709
> Ahg906822 jgi|Araly1|906822|Al_scaffold_0003_3950
Length=918
Score = 272 bits (147), Expect = 5e-72
Identities = 356/450 (79%), Gaps = 41/450 (9%)
Strand=Plus/Plus
Query 241 ATGATGGTAGCGAATAG-TTTCGATCTATGGCAAAAGGATGtttttttCTCTGCAGCTGA 299
|||||||||| ||| || ||| |||||||||||||| |||||||| ||||||||||||||
Sbjct 1 ATGATGGTAGTGAACAGCTTT-GATCTATGGCAAAAAGATGTTTTCTTCTCTGCAGCTGA 59
Query 300 GGAGGTTCAAGAATCTGCTGATATAATGGAATCTGCGTATAGGTTGTGGTTTAAAGAGAA 359
||||||||| ||||||| ||||||||||| ||||| ||||| |||||| ||| ||||||
Sbjct 60 AGAGGTTCAAAAATCTGCAGATATAATGGAGTCTGCTTATAGATTGTGGATTAGAGAGAA 119
Query 360 GAGAGACGGTCGAGTATCCGTAGAATCAGACGAGCTCTGCAAAGAACTCCAAGCTGCTTT 419
|| | | | | ||| ||| || || ||| | || | | ||| | |||| ||
Sbjct 120 GA-A-A-GAT-GAG-ATCTGT--AA--AGA--A-CT-T-C-AAG-----C-AGCT--TTA 156
Query 420 GAGCACTGCTAAATGGCAGTTGGAAGAGTTTGAGAGGGCAGTGAGCTTAAGCCATGGAAA 479
| | || ||||||||||||||||| ||||||| || ||| || || || || ||| |||
Sbjct 157 G-GTACAGCTAAATGGCAGTTGGAGGAGTTTGTGAAGGCTGTAAGATTGAGTCAT--AAA 213
Query 480 --TTGT---CGAGATGACACTACCTTAACTA-GGCATAAACAGTTTGTTACCGCTATTGA 533
|||| | ||||| || | | || | ||||||||||||||||||||||||||||
Sbjct 214 CGTTGTGGGGGTGATGATTCTTCATCGAC-ACGGCATAAACAGTTTGTTACCGCTATTGA 272
Query 534 AAACCAGATTTATCAAGTGGAATCTACTCTGCTAGAGTCGTTA-AGCGAGAATGGGAAAC 592
|||||||||| ||| || ||| || |||||| |||| | ||| || |||||||| |||
Sbjct 273 AAACCAGATTCATCGCGTAGAAACTTCTCTGCAAGAGGC-TTATAGTGAGAATGGAAAAG 331
Query 593 AACCTTTGCGTTGGGTGGATCTTAACAAAGAAGAGCGTGATGATCTCG-CCATGTTTCTA 651
| ||| | |||||||| |||||||| |||||||||||||||| || | ||||||||||
Sbjct 332 AGCCTCTCCGTTGGGTTGATCTTAATGAAGAAGAGCGTGATGA-CTTGGCCATGTTTCTC 390
Query 652 TCTGGATCTTCTC-AGACGTCAGAGAGTTT 680
||||||||||||| | || |||||||||||
Sbjct 391 TCTGGATCTTCTCCA-ACTTCAGAGAGTTT 419
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56030750395
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5