BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G30260.1
Length=1243
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491725 jgi|Araly1|491725|fgenesh2_kg.7__1158__AT4G30260.1 1709 0.0
Ahg480849 jgi|Araly1|480849|fgenesh2_kg.3__3550__AT2G18840.1 752 0.0
> Ahg491725 jgi|Araly1|491725|fgenesh2_kg.7__1158__AT4G30260.1
Length=1220
Score = 1709 bits (925), Expect = 0.0
Identities = 1152/1253 (92%), Gaps = 50/1253 (4%)
Strand=Plus/Plus
Query 7 TCTTCTTCGTCAGATCTGAATCTTAATTTCCCCCAAATCAAAGCTTTTGACCTAAATCCG 66
|||||||| ||||||||||||| ||||||| |||||||||||||||||||||||||| ||
Sbjct 1 TCTTCTTCATCAGATCTGAATC-TAATTTCGCCCAAATCAAAGCTTTTGACCTAAAT-CG 58
Query 67 TTTCCCGGGAAAAATAAATCAACAAACCATCACCGGAATCTTCAATATCTCTCCGGTGAA 126
||||||||| || |||||||||||||||||||||||||| |||| |||||||||||||
Sbjct 59 TTTCCCGGG---AA-AAATCAACAAACCATCACCGGAATCTCCAATTTCTCTCCGGTGAA 114
Query 127 GAAAAAATGTCGCACAACGATACGATTCCGCTTTATCAATCATCTCAATCAGACATTGAC 186
| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 115 G-AAAAATGTCGCACAACGATACGATTCCGCTTTATCAATCATCTCAATCAGACATCGAC 173
Query 187 GAGATTGAGAATATGATGAACGACAGTTTTCAATCAGGTCCCGGAACCGTGCTTCCTGCT 246
||||||||||||||||||||||| ||||| |||||||||||||||||||| ||||| |||
Sbjct 174 GAGATTGAGAATATGATGAACGATAGTTTCCAATCAGGTCCCGGAACCGTTCTTCCAGCT 233
Query 247 CGACCACCGAGTCCGATCCGTCCGTCGATTCCCGTTTCATCCTCACCGTTCGTTCAATCC 306
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 234 CGACCACCGAGTCCGATCCGTCCGTCAATTCCCGTTTCATCCTCACCGTTCGTTCAATCC 293
Query 307 AATCTCCCACCGCTTCCACCGTCGTCTTCCTCCTCCACTCAGAAGGTGATGCCTGTTCCA 366
|||||||||||||| ||||||||||||| || ||| |||||||||||||||||||||||
Sbjct 294 AATCTCCCACCGCTACCACCGTCGTCTT-CT--TCCTCTCAGAAGGTGATGCCTGTTCCA 350
Query 367 GCTCCTCCACCACTTCCGTCAGCAGG----T---A-A----CGAAGGTAACAAGAGTATT 414
||||||||||| || ||||| | ||| | | | ||| ||||||||||| |||
Sbjct 351 GCTCCTCCACCGCTCCCGTCGGTAGGTAACTCCAACAGCTCCGATGGTAACAAGAGCATT 410
Query 415 GGAGGTAGCGGATTCGGATCTCCGCCAAATACATTGACGGAGCCTGTTTGGGATACTGTG 474
||||| || |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 411 GGAGGGAGTGGATTCGGATCTCCGCCAAATACATTGACGGAGCCTGTATGGGATACTGTG 470
Query 475 AAGCGTGATCTGTCACGGATCGTGAGTAATTTGAAGCTTGTGGTGTTTCCTAATCCGTAT 534
||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 471 AAGCGCGATCTGTCACGGATCGTGAGTAATTTGAAGCTTGTGGTGTTTCCGAATCCGTAT 530
Query 535 AGGGAAGATCCTGGGAAAGCACTTAGGGATTGGGATCTATGGGGACCTTTTTTCTTCATT 594
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 531 AGGGAAGATCCTGGGAAAGCACTTAGGGATTGGGATCTATGGGGACCGTTTTTCTTCATT 590
Query 595 GTGTTCTTGGGGCTTACTCTTTCGTGGTCTGCTTCCGTTAAGAAGTCTGAAGTATTTGCC 654
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 591 GTGTTCTTGGGGCTTACTCTTTCGTGGTCTGCTTCTGTTAAGAAGTCTGAAGTATTTGCC 650
Query 655 GTGGCATTTGCACTACTTGCAGCTGGGGCAGTGATCCTCACACTAAATGTGCTGCTTCTG 714
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 651 GTGGCATTTGCACTACTTGCAGCTGGGGCAGTTATCCTCACACTAAATGTGCTGCTTCTG 710
Query 715 GGAGGACATATAATCTTTTTCCAAAGCCTAAGCCTTCTAGGCTACTGTCTATTTCCGCTA 774
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||
Sbjct 711 GGAGGACATATAATCTTTTTCCAAAGCCTAAGCCTTCTAGGTTACTGTCTATTTCCACTG 770
Query 775 GACGTTGGAGCAGTGATCTGCATGTTGAAAGACAATGTGATACTGAAGATGGTCGTTGTG 834
||||||||||||||||||||||||||||| |||||||||||||| || ||| ||||||||
Sbjct 771 GACGTTGGAGCAGTGATCTGCATGTTGAAGGACAATGTGATACTCAAAATGATCGTTGTG 830
Query 835 TCTGTGACTCTTGCCTGGAGCTCTTGGGCTGCTTATCCTTTCATGAGCGCCGCAGTGAAC 894
||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 831 TCTGTGACTCTTGCCTGGAGCTCTTGGGCTGCTTATCCTTTCATGAGTGCTGCAGTGAAC 890
Query 895 CCGAGAAGAAAAGCTCTCGCACTCTACCCGGTCTTCCTCATGTATGTCTCTGTTGGCTTC 954
||||||||||||||||| ||||| |||||||| |||||||||||||||||||||||||||
Sbjct 891 CCGAGAAGAAAAGCTCTAGCACTTTACCCGGTTTTCCTCATGTATGTCTCTGTTGGCTTC 950
Query 955 TTAATCATTGCCATTAATTGATTCTATCCGGAAAAATGGGAAATCAGAGATAGGTTCTTT 1014
|| |||||||||||| |||||||||||| |||||||||||||||||||||||| |||| |
Sbjct 951 TTGATCATTGCCATTGATTGATTCTATCTGGAAAAATGGGAAATCAGAGATAGTTTCTCT 1010
Query 1015 GATTCAGTTTGGGAAGTCATTTGGTACAGAGTAGATAGAGAATTCTCCAGCCGCGAACTA 1074
||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1011 GATTCAGTTTGGGAAATCATTTGGTACAGAGTAGATAGAGAATTCTCCAGCCGTGAACTA 1070
Query 1075 TTCTGAGTTCTAATGAGATCATATGTATAATATGTTCTTTGACGCTTTTTTGTTAAACTC 1134
||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1071 TTCTGAGTTCTAA--AGATCATATGTATAATATGTTCTTCGACGCTTTTTTGTTAAACTC 1128
Query 1135 CCCTGTGGATTTTACTCTTCTATATGGTTTTGCTTTGTGTATGAAACTTACGGTTCTTTT 1194
| ||| |||| || || || | | | | ||||||||||||||||||||
Sbjct 1129 ---TATGG-TTTTGCT-TT--AT--G-T---G-T------ATGAAACTTACGGTTCTTTT 1168
Query 1195 TTGGAAACGTATA---TATA-A-TATCAAGACCTTGATGCTCGTAGCTTTAAT 1242
| ||||||||||| |||| | ||| || ||||||||| |||||||||||||
Sbjct 1169 T-GGAAACGTATACAGTATATAATATTAAAACCTTGATGATCGTAGCTTTAAT 1220
> Ahg480849 jgi|Araly1|480849|fgenesh2_kg.3__3550__AT2G18840.1
Length=890
Score = 752 bits (407), Expect = 0.0
Identities = 721/867 (83%), Gaps = 43/867 (5%)
Strand=Plus/Plus
Query 125 AAGAAAAAATGTCGCACAA--CGATACGA-TTCCGCTTTA-TCAATCATCTCAATCAGAC 180
||| |||||||| ||||| |||||| | | |||||| | || ||| ||||||||||||
Sbjct 43 AAG-AAAAATGT--CACAAGGCGATAC-AGTACCGCTTCATTC-ATCGTCTCAATCAGAC 97
Query 181 ATTGACGAGATTGAGAATATGATGAACGACAGTTTTCAATCAGGTCCCGGAACCGTGCTT 240
||||||||||| |||||| |||| ||||| || | |||||||||||||||||||| | |
Sbjct 98 ATTGACGAGATCGAGAATCTGATTAACGAAAGCGTCCAATCAGGTCCCGGAACCGTTC-T 156
Query 241 C-CTGCTCGACCACCGAGTCCGATCC-GTCCGTCGATTCCCGTTTCATC--C-TCACCGT 295
| | ||||| |||||||| || | || | ||||||||||| ||||| || | || ||||
Sbjct 157 CGCCGCTCGTCCACCGAG-CCCAACCAGACCGTCGATTCCAGTTTCTTCTTCTTCTCCGT 215
Query 296 TCGTTCAATCCAATCTCCCACCGCTTCCACCGTCGTCTTCCTCCTCCA-CTCAGAAGGTG 354
| | ||||| ||||| || |||||| || || | || || | || ||||||| |||
Sbjct 216 TTATGCAATCGAATCTTCCTCCGCTT-CA---TC--CGTCGTCAT-CAGCTCAGAAAGTG 268
Query 355 ATGCCTGTTCCAGCTCCTCCACCACTTCCGTCAGCAGGTAACG-AA-GGTAACAAGAGT- 411
| ||||| || | |||||| || |||||| || ||||| | || || ||| |
Sbjct 269 ACACCTGTCCCCGTTCCTCCGCCTCTTCCG---GC-GGTAA-GTAATTCTAGCAA-TTTC 322
Query 412 -ATTGGAG-GTAGCG-GATTCGGATCTCCGCCAAATACATTGACGGAGCCTGTTTGGGAT 468
| |||| | || | | || ||||||||||| ||||| |||||||||||||| ||||||
Sbjct 323 CA-AGGAGCG-AGTGCG-TTTGGATCTCCGCCTAATACGTTGACGGAGCCTGTGTGGGAT 379
Query 469 ACTGTGAAGCGTGATCTGTCACGGATCGTGAGTAATTTGAAGCTTGTGGTGTTTCCTAAT 528
|||||||| || |||||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 380 ACTGTGAAACGAGATCTGTCTCGGATTGTGAGTAATTTGAAGCTTGTGGTGTTTCCTAAT 439
Query 529 CCGTATAGGGAAGATCCTGGGAAAGCACTTAGGGATTGGGATCTATGGGGACCTTTTTTC 588
|||||||| |||||||||||||| || ||||| ||||||||||| ||||| || ||||||
Sbjct 440 CCGTATAGAGAAGATCCTGGGAAGGCTCTTAGAGATTGGGATCTTTGGGGTCCGTTTTTC 499
Query 589 TTCATTGTGTTCTTGGGGCTT-ACTCTTTCGTGGTCTGCTTCCGTTAAGAAGTCTGAAGT 647
||||||||||||||||| || |||||||| ||||| ||||||||||||||||| || ||
Sbjct 500 TTCATTGTGTTCTTGGGA-TTGACTCTTTCATGGTCAGCTTCCGTTAAGAAGTCCGAGGT 558
Query 648 ATTTGCCGTGGCATTTGCACTACTT-GCAGCTGGGGCAGTGATCCTCACACTAAATGTGC 706
|||||| ||||||||||||||| || ||||| ||||| |||||||| |||||||| ||||
Sbjct 559 ATTTGCAGTGGCATTTGCACTA-TTAGCAGCCGGGGCGGTGATCCTTACACTAAACGTGC 617
Query 707 TGCTTCTGGGAGGACATATAATCTTTTTCCAAAGCCTAAGCCTTCTAGGCTACTGTCTAT 766
| || ||||| |||||||||||||| ||||||||| | ||||||||||| |||||| |||
Sbjct 618 TTCTCCTGGGTGGACATATAATCTTCTTCCAAAGCTTGAGCCTTCTAGGTTACTGTTTAT 677
Query 767 TTCCGCTAGACGTTGGAGCAGTGATCTGCATGTTGAAAGACAATGTGATACTGAAGATGG 826
|||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 678 TTCCACTAGACGTTGGAGCTGTGATCTGCATGTTGAAAGACAATGTGATACTGAAGATTG 737
Query 827 TCGTTGTGTCTGTGACTCTTGCCTGGAGCTCTTGGGCTGCTTATCCTTTCATGAGCGCCG 886
| |||||||| || || ||||| |||||||| ||||||||||| |||||||||||| | |
Sbjct 738 TGGTTGTGTCGGTAACGCTTGCATGGAGCTCATGGGCTGCTTACCCTTTCATGAGCTCAG 797
Query 887 CAGTGAACCCGAGAAGAAAAGCTCTCGCACTCTACCCGGTCTTCCTCATGTATGTCTCTG 946
| || ||||| ||||||||||| ||||| || ||||| ||||||||||||||||| || |
Sbjct 798 CGGTTAACCCAAGAAGAAAAGCACTCGCTCTATACCCCGTCTTCCTCATGTATGTATCAG 857
Query 947 TTGGCTTCTTAATCATTGCCATTAATT 973
| || ||| | ||||| ||||| ||||
Sbjct 858 TCGGTTTCCTCATCATCGCCATCAATT 884
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46433712906
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5