BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G30270.1
Length=1207
Score E
Sequences producing significant alignments: (Bits) Value
Ahg944964 jgi|Araly1|944964|scaffold_701193.1 1356 0.0
> Ahg944964 jgi|Araly1|944964|scaffold_701193.1
Length=851
Score = 1356 bits (734), Expect = 0.0
Identities = 803/837 (96%), Gaps = 2/837 (0%)
Strand=Plus/Plus
Query 124 gtacgcacacacacaAAGACAATGTCTCCTTTCAAAATATTCTTCTTCACGACTCTTCTC 183
|||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1 GTACGCGCACACACAAAGACAATGTCTCCTTTCAAAATATTCTTCTTCACGGCTCTTCTC 60
Query 184 GTGGCGGCGTTTTCAG-TGTCGGCTGCTGATTTCAACACTGACGTCAACGTAGCTTGGGG 242
|||||||||||||| | | || || ||||||||||| |||||||||||||||||||||||
Sbjct 61 GTGGCGGCGTTTTC-GTTCTCCGCCGCTGATTTCAATACTGACGTCAACGTAGCTTGGGG 119
Query 243 AAATGGCCGTGGGAAGATACTCAACAACGGCCAGCTTCTTACTCTCTCCTTAGACAAATC 302
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 120 AAATGGCCGTGGGAAGATACTCAACAACGGCCAGCTTCTTACTCTCTCTTTAGACAAATC 179
Query 303 CTCTGGTTCCGGTTTTCAATCCAAAACAGAGTATTTGTTTGGAAAGATTGATATGCAGAT 362
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 180 CTCTGGTTCTGGTTTTCAATCCAAAACAGAGTATTTGTTTGGAAAGATTGATATGCAGAT 239
Query 363 TAAGCTTGTTCCTGGTAACTCTGCAGGAACAGTCACAACTTTTTACCTAAAATCCGAAGG 422
||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 240 TAAGCTTGTTCCTGGTAACTCAGCAGGAACAGTCACAACTTTTTACCTAAAATCTGAAGG 299
Query 423 ATCCACTTGGGATGAGATTGATTTTGAGTTCTTGGGTAATATGAGTGGAGATCCTTATAC 482
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 300 ATCGACTTGGGATGAGATTGATTTTGAGTTCTTGGGTAATATGAGTGGAGATCCTTATAC 359
Query 483 TTTACACACTAATGTTTACACTCAAGGTAAAGGTGACAAAGAGCAACAATTCCATCTCTG 542
||||||||||||||||||||||||||| |||||||| ||||||||||||||| |||||||
Sbjct 360 TTTACACACTAATGTTTACACTCAAGGCAAAGGTGATAAAGAGCAACAATTCTATCTCTG 419
Query 543 GTTCGACCCAACCGCCAATTTCCACACTTACTCAATCCTCTGGAACCCTCAAAGAATCAT 602
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 GTTCGACCCAACCGCAAATTTCCACACTTACTCAATCCTCTGGAACCCTCAAAGAATCAT 479
Query 603 ATTGACCGTCGATGACACACCCATTAGAGAGTTTAAAAACTATGAGTCTCTCGGTGTCTT 662
||||||||| ||||||||||| |||||||||||||||||| |||||||| ||||||||||
Sbjct 480 ATTGACCGTTGATGACACACCGATTAGAGAGTTTAAAAACCATGAGTCTATCGGTGTCTT 539
Query 663 GTTTCCAAAGAACAAGCCGATGAGGATGTACGCGAGTTTATGGAACGCAGACGATTGGGC 722
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 540 GTTTCCAAAGAACAAGCCGATGAGGATGTACGCAAGTTTATGGAACGCAGACGATTGGGC 599
Query 723 AACAAGAGGCGGTCTTGTTAAAACTGATTGGTCTAAAGCTCCATTCATGGCTTCTTACAG 782
||| |||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 600 AACTAGAGGCGGTCTTGTTAAAACGGATTGGTCTAAAGCTCCATTCATAGCTTCTTACAG 659
Query 783 AAACATTAAGATTGACTCGAAACCAAACTCCAATTGGTACACTCAAGAAATGGATTCAAC 842
|||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 660 AAACATTAAGATCGACTCGAAACCAAACTCCAACTGGTACACTCAAGAAATGGATTCGAC 719
Query 843 AAGCCAAGCTAGACTCAAATGGGTTCAGAAGAATTACATGATCTACAATTATTGTACTGA 902
|||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||
Sbjct 720 GAGCCAAGCTAGACTCAGATGGGTTCAGAAGAACTACATGATCTACAATTATTGTACTGA 779
Query 903 CCATAGGAGGTTTCCACAGGGAGCTCCTAAGGAATGCACAACAAGCTCATAGAATCT 959
|| || |||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 780 CCGTAAGAGGTTTCCACAGGGAGCCCCTAAGGAATGCACAACAAGCTCATAGAATCT 836
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45061287894
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5