BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G30290.1
Length=1127
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491721 jgi|Araly1|491721|fgenesh2_kg.7__1154__AT4G30290.1 1519 0.0
Ahg491722 jgi|Araly1|491722|fgenesh2_kg.7__1155__AT4G30280.1 1064 0.0
Ahg475629 jgi|Araly1|475629|fgenesh2_kg.2__759__AT4G30280.1 1011 0.0
Ahg475586 jgi|Araly1|475586|fgenesh2_kg.2__716__AT4G30280.1 612 2e-174
> Ahg491721 jgi|Araly1|491721|fgenesh2_kg.7__1154__AT4G30290.1
Length=961
Score = 1519 bits (822), Expect = 0.0
Identities = 919/966 (95%), Gaps = 5/966 (1%)
Strand=Plus/Plus
Query 1 ATCAACAATATACATCTGAGATATCAAAACTCCTAGAGAGATCTAATAAAAATGAAGTCT 60
||||||||||||||||| | ||||||||||||||||||||||||| ||||||||||||
Sbjct 1 ATCAACAATATACATCT--G--ATCAAAACTCCTAGAGAGATCTAAT-AAAATGAAGTCT 55
Query 61 TTTACGTTCTTGATTCTCTTTCTCTTTGCAGCACAATCTATCAGCGTCTATGCAGGCAGC 120
||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 56 TTTGCGTTCTTGATTCTCTTTCTCTTTGCAGCACAATCTATGAGCGTCTATGCAGGCAGC 115
Query 121 TTCCACAAAGACGTTAAGATACATTGGGGTGATGGTCGTGGAAAGATTCACGATAATCAA 180
|| |||||||||||||| |||||||||||||||||||| |||||||||||||||||| ||
Sbjct 116 TTTCACAAAGACGTTAAAATACATTGGGGTGATGGTCGAGGAAAGATTCACGATAATGAA 175
Query 181 GGGAAACTTCTATCTCTCTCGCTTGACAAATCCTCTGGTTCAGGTTTCCAATCTAATCAA 240
||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 176 GGGAAACTTCTTTCTCTCTCGCTTGACAAATCTTCTGGTTCAGGTTTCCAATCTAATCAA 235
Query 241 GAGTTTCTCTATGGTAAAGCCGAAGTTCAAATGAAACTTGTCCCTGGTAACTCTGCTGGA 300
|||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 236 GAGTTTCTCTATGGCAAAGCCGAGGTTCAAATGAAACTTGTCCCTGGTAACTCTGCTGGA 295
Query 301 ACCGTCACAACATTCTATCTTAAATCTCCGGGAACTACATGGGATGAGATTGATTTCGAG 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 296 ACCGTCACAACATTCTATCTTAAATCTCCGGGAACTACATGGGATGAGATTGATTTCGAG 355
Query 361 TTTTTGGGGAACATAAGTGGTCATCCATATACTCTCCATACTAATGTTTACACAAAAGGC 420
|| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 356 TTCTTGGGGAACATAAGTGGTCATCCATATACTCTCCACACTAATGTTTACACAAAAGGC 415
Query 421 TCAGGAGACAAAGAACAACAATTTCATCTATGGTTTGACCCAACCGCTAACTTTCACACT 480
|||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||
Sbjct 416 TCAGGAGACAAAGAACAACAGTTTCATCTATGGTTTGACCCAACCGCTAACTTCCACACT 475
Query 481 TATTGCATCACATGGAATCCACAAAGAATTATTTTTACCGTTGATGGGATTCCAATTAGA 540
|| ||||||||||||||||| ||||| ||||||||||| |||||||||||||||||||||
Sbjct 476 TACTGCATCACATGGAATCCTCAAAGGATTATTTTTACTGTTGATGGGATTCCAATTAGA 535
Query 541 GAGTTTATGAATGCCGAGTCACGTGGAGTCCCATTCCCAACAAAGCAACCAATGAGGCTA 600
||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 536 GAGTTCATGAATGCCGAGTCACGTGGAGTCCCATTCCCAACGAAGCAACCAATGAGGCTC 595
Query 601 TATGCGAGTCTATGGGAAGCAGAGCATTGGGCTACAAGGGGAGGATTAGAGAAAACAGAT 660
||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 596 TATGCGAGTCTCTGGGAAGCTGAGCATTGGGCTACAAGGGGAGGATTAGAGAAAACAGAT 655
Query 661 TGGTCAAAAGCTCCTTTCACCGCTTATTACAGAAACTACAATGTCGAGGGATGTGTATGG 720
||||||||||||||||||||||||| ||||||||||||||||||||| |||||||| |||
Sbjct 656 TGGTCAAAAGCTCCTTTCACCGCTTTTTACAGAAACTACAATGTCGAAGGATGTGTTTGG 715
Query 721 GTTAATGGAAAGTCAGTTTGTCCCGCAAATTCCCAATGGTTCACTCAAAAACTCGATTCG 780
| ||||||||| |||| |||||| |||||||| |||||||||||||||||||||||||||
Sbjct 716 GCTAATGGAAAATCAGCTTGTCCAGCAAATTCTCAATGGTTCACTCAAAAACTCGATTCG 775
Query 781 AATGGCCAGACAAGAATGAAAGGGGTACAGAGTAAATACATGGTTTACAACTATTGCTCC 840
|||||||||| |||||||||||||||||| ||||||||||||||||||||||||||| ||
Sbjct 776 AATGGCCAGAAAAGAATGAAAGGGGTACAAAGTAAATACATGGTTTACAACTATTGCACC 835
Query 841 GATaaaaaaaGGTTTCCTCGAGGTGTTCCTCCAGAGTGCAGCTAAATGATTGATTCTTTG 900
|||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 836 GATAAAAAGAGGTTTCCTCGAGGTGTTCCTCCAGAGTGCAGCTAAATTATTGATTCTTTG 895
Query 901 ATTCATAAATAAGTTACTTGACGTTGTCTTTGTAACTCAATGGTTCTTCTTATCTATAAT 960
|||| | ||||||||||||| | |||||||||||||||||||||||||||| ||||| ||
Sbjct 896 ATTCGTGAATAAGTTACTTGGCATTGTCTTTGTAACTCAATGGTTCTTCTTTTCTATTAT 955
Query 961 TTTTCA 966
||||||
Sbjct 956 TTTTCA 961
> Ahg491722 jgi|Araly1|491722|fgenesh2_kg.7__1155__AT4G30280.1
Length=1008
Score = 1064 bits (576), Expect = 0.0
Identities = 773/867 (89%), Gaps = 18/867 (2%)
Strand=Plus/Plus
Query 60 TTTTACGTTCTTGATTCTCTTTCTCTTTGCAGCACAATCTAT-CAGCGTCTATGCAGGCA 118
|||| ||||||||||| | ||||| ||||| ||||||||| | || ||| |||| || |
Sbjct 72 TTTTGCGTTCTTGATTTTGTTTCTTTTTGCGGCACAATCTGTGCA-TGTCAATGCGGGTA 130
Query 119 GCTTCCACAAAGACGTTAAGATACATTGGGGTGATGGTCGTGGAAAGATTCACGATAATC 178
||||||||||||||||| ||||||||||||||||||| || |||||||||| ||| |
Sbjct 131 GCTTCCACAAAGACGTTCAGATACATTGGGGTGATGGCCGCGGAAAGATTCGCGA-CA-G 188
Query 179 A-AGGGAAA-CTTCTATCTCTCTCGCTTGACAAATCCTCTGGTTCAGGTTTCCAATCTAA 236
| | ||||| ||||| ||||||||||| |||||||||||||| || ||||| || |||||
Sbjct 189 AGATGGAAAGCTTCTTTCTCTCTCGCTCGACAAATCCTCTGGATCCGGTTTTCAGTCTAA 248
Query 237 TCAAGAGTTTCTCTATGGTAAAGCCGAAGTTCAAATGAAACTTGTCCCTGGTAACTCTGC 296
|| |||||||||||||| ||||| || |||||||||||||||||| |||||||||| ||
Sbjct 249 CCAGGAGTTTCTCTATGGCAAAGCTGAGGTTCAAATGAAACTTGTCTCTGGTAACTCAGC 308
Query 297 TGGAACCGTCACAACATTCTATCTTAAATCTCCGGGAACTACATGGGATGAGATTGATTT 356
|||||| || |||||||| ||||||||||||||||||||||| |||||||||||||||||
Sbjct 309 TGGAACAGTGACAACATTTTATCTTAAATCTCCGGGAACTACGTGGGATGAGATTGATTT 368
Query 357 CGAGTTTTTGGGGAA-CATAAGTGGTCATCCATATACTCTCCATACTAATGTTTACACAA 415
|||||| ||||| || | | ||||||||||||||||||||||||||||||||||||||||
Sbjct 369 CGAGTTCTTGGGAAATC-TTAGTGGTCATCCATATACTCTCCATACTAATGTTTACACAA 427
Query 416 AAGGCTCAGGAGACAAAGAACAACAATTTCATCTATGGTTTGACCCAACCGCTAACTTTC 475
||||||| ||||| |||||||||||||||||||||||||| |||||||||| ||||||||
Sbjct 428 AAGGCTCTGGAGATAAAGAACAACAATTTCATCTATGGTTCGACCCAACCGTTAACTTTC 487
Query 476 ACACTTATTGCATCACATGGAATCCACAAAGAATTATTTTTACCGTTGATGGGATTCCAA 535
||||||||||||||||||||||||| ||||| ||||||||||| |||||||| ||||| |
Sbjct 488 ACACTTATTGCATCACATGGAATCCCCAAAGGATTATTTTTACAGTTGATGGAATTCCCA 547
Query 536 TTAGAGAGTTTATGAATGCCGAGTCACGTGGAGTCCCATTCCCAACAAAGCAACCAATGA 595
|||||||||| | |||| |||||||| |||||| || |||||||| |||||||||||||
Sbjct 548 TTAGAGAGTTCAAGAATTCCGAGTCAATTGGAGTTCCGTTCCCAACGAAGCAACCAATGA 607
Query 596 GGCTATATGCGAGTCTATGGGAAGCAGAGCATTGGGCTACAAGGGGAGGATTAGAGAAAA 655
|||| || ||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 608 GGCTCTACGCGAGTCTATGGGAAGCCGAGCATTGGGCTACAAGGGGAGGATTAGAGAAAA 667
Query 656 CAGATTGGTCAAAAGCTCCTTTCACCGCTTAT-TACAGAAACTACAATGTCGA-GGGATG 713
||||||||||||| |||||||| ||||||| | ||||||||||||||||| || ||| ||
Sbjct 668 CAGATTGGTCAAAGGCTCCTTTTACCGCTT-TCTACAGAAACTACAATGTTGATGGG-TG 725
Query 714 TGTATGGGTTAATGGAAAGTCAGT-TTGTCCCGCAAATTC-CCAATGGTTCACTCAAAAA 771
|||||||| ||||||||| ||| | ||||||| | ||||| ||| |||||||||||| ||
Sbjct 726 TGTATGGGCTAATGGAAAATCA-TCTTGTCCCACGAATTCTCCA-TGGTTCACTCAACAA 783
Query 772 CTCGATTCGAATGGCCAGACAAGAATGAAAGGGGTACAGAGTAAATACATGGTTTACAAC 831
|||||||| || |||||||||||||||||||| ||||||||||| |||||||| ||||||
Sbjct 784 CTCGATTCAAACGGCCAGACAAGAATGAAAGGAGTACAGAGTAAGTACATGGTCTACAAC 843
Query 832 TATTGCTCCGATaaaaaaaGGTTTCCTCGAGGTGTTCCTCCAGAGTGCAGCTAAAT-GAT 890
|||||| ||||||||||||||||||||||||||||||| |||||||||| ||||| | |
Sbjct 844 TATTGCACCGATAAAAAAAGGTTTCCTCGAGGTGTTCCAGCAGAGTGCAGTTAAATTG-T 902
Query 891 TGATTCTTTGATTCATAAATAAGTTAC 917
|||||||||||||| | ||||||||||
Sbjct 903 TGATTCTTTGATTCGTGAATAAGTTAC 929
> Ahg475629 jgi|Araly1|475629|fgenesh2_kg.2__759__AT4G30280.1
Length=1023
Score = 1011 bits (547), Expect = 0.0
Identities = 835/970 (86%), Gaps = 36/970 (4%)
Strand=Plus/Plus
Query 55 AAGTCTTTTACGTTCTTGATTCTCTTTC-TCTTTGCAGCACAATCTAT-CAGCGTCTATG 112
|||| |||| ||||||| ||||| |||| || |||| | ||||| | | || |||||||
Sbjct 50 AAGT-TTTT-CGTTCTTAATTCTGTTTCTTC-TTGCGGGACAATATGTGCA-TGTCTATG 105
Query 113 CAGGCAGCTTCCACAAAGACGTTAAGATACATTGGGGTGATGGTCGTGGAAAGATTCACG 172
| || |||||||||||||||||| ||||||||||||||||||| || |||||||||||||
Sbjct 106 CGGGTAGCTTCCACAAAGACGTTCAGATACATTGGGGTGATGGCCGCGGAAAGATTCACG 165
Query 173 ATAATCAAGGGAAACTTCTATCTCTCTCGCTTGACAAATCCTCTGGTTCAGGTTTCCAAT 232
| || | || |||||||| ||||||||||| |||||||||||||| || ||||| || |
Sbjct 166 ACAAAGATGGAAAACTTCTTTCTCTCTCGCTCGACAAATCCTCTGGATCCGGTTTTCAGT 225
Query 233 CTAATCAAGAGTTTCTCTATGGTAAAGCCGAAGTTCAAATGAAACTTGTCCCTGGTAACT 292
|||| || |||||||||||||| |||||||| ||||||||||||||||| |||||||| |
Sbjct 226 CTAACCAGGAGTTTCTCTATGGCAAAGCCGAGGTTCAAATGAAACTTGTTCCTGGTAATT 285
Query 293 CTGCTGGAACCGTCACAACATTCTATCTTAAATCTCCGGGAACTACATGGGATGAGATTG 352
| |||||||| || |||||||||||||| ||||| ||||||||||| ||||||||||| |
Sbjct 286 CAGCTGGAACAGTAACAACATTCTATCTAAAATCGCCGGGAACTACGTGGGATGAGATCG 345
Query 353 ATTTCGAGTTTTTGGGGAACATAAGTGGTCATCCATATACTCTCCATACTAATGTTTACA 412
|||||||||| ||||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct 346 ATTTCGAGTTCTTGGGAAACATAAGTGGTCATCCGTATACTCTCCATACTAATGTTTACA 405
Query 413 CAAAAGGCTCAGGAGACAAAGAACAACAATTTCATCTATGGTTTGACCCAACCGCTAACT 472
|||||||| |||||||||||||||||||||||||||||||||| ||||| |||| ||| |
Sbjct 406 CAAAAGGCACAGGAGACAAAGAACAACAATTTCATCTATGGTTCGACCCCACCGTTAATT 465
Query 473 TTCACACTTATTGCATCACATGGAATCCACAAAGAATTATTTTTACCGTTGATGGGATTC 532
|||||||||||||||||||||||||||| ||||| ||||||||||| |||||||| ||||
Sbjct 466 TTCACACTTATTGCATCACATGGAATCCCCAAAGGATTATTTTTACGGTTGATGGAATTC 525
Query 533 CAATTAGAGAGTTTATGAA-TGCCGAGTCACGTGGAGTCCCATTCCCAACAAAG-CAACC 590
| ||||||||||| | || | | ||| || |||||| || |||||||| || |||||
Sbjct 526 CTATTAGAGAGTTCAAAAACT-CTGAGGCAATTGGAGTTCCGTTCCCAAC-GAGACAACC 583
Query 591 AATGAGGCTATATGCGAGTCTATGGGAAGCAGAGCATTGGGCTACAAGGGGAGGATTAGA 650
||||||||| || |||||||| |||||||| ||||||||||| ||||| |||||||||||
Sbjct 584 AATGAGGCTCTACGCGAGTCTCTGGGAAGCCGAGCATTGGGCAACAAGAGGAGGATTAGA 643
Query 651 GAAAACAGATTGGTCAAAAGCTCCTTTCACCGCTTAT-TACAGAAACTACAATGTCGAGG 709
||||||||||||||||||||||||||| || |||| | |||||||||||||||||||| |
Sbjct 644 GAAAACAGATTGGTCAAAAGCTCCTTTTACTGCTT-TCTACAGAAACTACAATGTCGATG 702
Query 710 GATGTGTATGGGTTAATGGAAAGTCAGTT-TGTCCCGCA-AATTCCCAATGGTTCACTCA 767
|||||||||||| ||| ||||| ||| | ||| ||| | ||||||| ||||||||||||
Sbjct 703 GATGTGTATGGGCTAACGGAAAATCA-TCATGTTCCG-AGAATTCCCCATGGTTCACTCA 760
Query 768 AAAACTCGATTCGAATGGCCAGACAAGAATGAAAGGGGTACAGAGTAAATACATGGTTTA 827
|||||||||||| || |||||||||||||||||||| ||||| |||||||||||| | ||
Sbjct 761 AAAACTCGATTCAAACGGCCAGACAAGAATGAAAGGTGTACAAAGTAAATACATGATCTA 820
Query 828 CAACTATTGCTCCGATaaaaaaaGGTTTCCTCGAGGTGTTCCTCCAGAGTGCAGCT-AAA 886
|||||||||| ||||||||| |||||||||||| | ||||||| ||| ||||| || |||
Sbjct 821 CAACTATTGCACCGATAAAAGAAGGTTTCCTCGCGATGTTCCTGCAGTGTGCA-CTTAAA 879
Query 887 T-GATTGATTCTTTGATTCATAAATAAGTTACTTGACGTTGTCTTTGTAACTCAATG--G 943
| | ||||||||||||| | | ||||||||||| ||| |||||||||||||| |
Sbjct 880 TTG-TTGATTCTTTGATG-A-A--TAAGTTACTTGGTATTGCCTTTGTAACTCAATTAAG 934
Query 944 TTCTTCTTATCTATAATTTT-TCAATTCATTTGTTAC-CAAATATATGCG-TGTTTGTGT 1000
|| || | |||||| |||| ||| || ||||||| | || ||||||| | | ||| |||
Sbjct 935 TT-TT-T-ATCTAT--TTTTATCATTT-ATTTGTTGCTCATATATATGTGGTTTTTATGT 988
Query 1001 AA-GATCTTT 1009
|| ||| |||
Sbjct 989 AAAGATGTTT 998
> Ahg475586 jgi|Araly1|475586|fgenesh2_kg.2__716__AT4G30280.1
Length=993
Score = 612 bits (331), Expect = 2e-174
Identities = 440/493 (89%), Gaps = 6/493 (1%)
Strand=Plus/Plus
Query 55 AAGTCTTTTACGTTCTTGATTCTCTTTC-TCTTTGCAGCACAATCTAT-CAGCGTCTATG 112
|||| |||| ||||||| ||||| |||| || |||| | ||||| | | || |||||||
Sbjct 50 AAGT-TTTT-CGTTCTTAATTCTGTTTCTTC-TTGCGGGACAATATGTGCA-TGTCTATG 105
Query 113 CAGGCAGCTTCCACAAAGACGTTAAGATACATTGGGGTGATGGTCGTGGAAAGATTCACG 172
| || |||||||||||||||||| ||||||||||||||||||| || |||||||||||||
Sbjct 106 CGGGTAGCTTCCACAAAGACGTTCAGATACATTGGGGTGATGGCCGCGGAAAGATTCACG 165
Query 173 ATAATCAAGGGAAACTTCTATCTCTCTCGCTTGACAAATCCTCTGGTTCAGGTTTCCAAT 232
| || | || |||||||| ||||||||||| |||||||||||||| || ||||| || |
Sbjct 166 ACAAAGATGGAAAACTTCTTTCTCTCTCGCTCGACAAATCCTCTGGATCCGGTTTTCAGT 225
Query 233 CTAATCAAGAGTTTCTCTATGGTAAAGCCGAAGTTCAAATGAAACTTGTCCCTGGTAACT 292
|||| || |||||||||||||| |||||||| ||||||||||||||||| |||||||| |
Sbjct 226 CTAACCAGGAGTTTCTCTATGGCAAAGCCGAGGTTCAAATGAAACTTGTTCCTGGTAATT 285
Query 293 CTGCTGGAACCGTCACAACATTCTATCTTAAATCTCCGGGAACTACATGGGATGAGATTG 352
| |||||||| || |||||||||||||| ||||| ||||||||||| ||||||||||| |
Sbjct 286 CAGCTGGAACAGTAACAACATTCTATCTAAAATCGCCGGGAACTACGTGGGATGAGATCG 345
Query 353 ATTTCGAGTTTTTGGGGAACATAAGTGGTCATCCATATACTCTCCATACTAATGTTTACA 412
|||||||||| ||||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct 346 ATTTCGAGTTCTTGGGAAACATAAGTGGTCATCCGTATACTCTCCATACTAATGTTTACA 405
Query 413 CAAAAGGCTCAGGAGACAAAGAACAACAATTTCATCTATGGTTTGACCCAACCGCTAACT 472
|||||||| |||||||||||||||||||||||||||||||||| |||||||||| |||||
Sbjct 406 CAAAAGGCACAGGAGACAAAGAACAACAATTTCATCTATGGTTCGACCCAACCGTTAACT 465
Query 473 TTCACACTTATTGCATCACATGGAATCCACAAAGAATTATTTTTACCGTTGATGGGATTC 532
|||||||||||||||||||||||||||| ||||| ||||||||||| |||||||| ||||
Sbjct 466 TTCACACTTATTGCATCACATGGAATCCCCAAAGGATTATTTTTACGGTTGATGGAATTC 525
Query 533 CAATTAGAGAGTT 545
| |||||||||||
Sbjct 526 CTATTAGAGAGTT 538
Score = 403 bits (218), Expect = 1e-111
Identities = 359/423 (85%), Gaps = 25/423 (6%)
Strand=Plus/Plus
Query 597 GCTATATGCGAGTCTATGGGAAGCAGAGCATTGGGCTACAAGGGGAGGATTAGAGAAAAC 656
||| || |||||||| |||||||| ||||||||||| ||||| |||||||||||||||||
Sbjct 561 GCTCTACGCGAGTCTCTGGGAAGCCGAGCATTGGGCAACAAGAGGAGGATTAGAGAAAAC 620
Query 657 AGATTGGTCAAAAGCTCCTTTCACCGCTTAT-TACAGAAACTACAATGTCGAGGGATGTG 715
||||||||||||||||||||| || |||| | |||||||||||||||||||| ||||| |
Sbjct 621 AGATTGGTCAAAAGCTCCTTTTACTGCTT-TCTACAGAAACTACAATGTCGATGGATG-G 678
Query 716 TATGGGTTAATGGAAAGTCAGT-TTGTCCCGCAAATTCCCAATGGTTCACTCAAAAACTC 774
|||||| ||| ||||| ||| | ||| |||| ||||||| |||||||||||||||||||
Sbjct 679 TATGGGCTAACGGAAAATCA-TCATGTTCCGCGAATTCCCCATGGTTCACTCAAAAACTC 737
Query 775 GATTCGAATGGCCAGACAAGAATGAAAGGGGTACAGAGTAAATACATGGTTTACAACTAT 834
||||| ||||||||||||||||||||||| ||||| |||||||||||| | |||||||||
Sbjct 738 GATTCAAATGGCCAGACAAGAATGAAAGGTGTACAAAGTAAATACATGATCTACAACTAT 797
Query 835 TGCTCCGATaaaaaaaGGTTTCCTCGAGGTGTTCCTCCAGAGTGCAGCT-AAAT-GATTG 892
||| ||||||||| |||||||||||| | ||||||| ||| ||||| || |||| | |||
Sbjct 798 TGCACCGATAAAAGAAGGTTTCCTCGCGATGTTCCTGCAGTGTGCA-CTTAAATTG-TTG 855
Query 893 ATTCTTTGATTCATAAATAAGTTACTTGACGTTGTCTTTGTAACTCAATG--GTTCTTCT 950
|||||||||| | | ||||||||||| ||| |||||||||||||| ||| || |
Sbjct 856 ATTCTTTGATG-A-A--TAAGTTACTTGGTATTGCCTTTGTAACTCAATTAAGTT-TT-T 909
Query 951 TATCTATAATTTT-TCAATTCATTTGTTAC-CAAATATATGCG-TGTTTGTGTAA-GATC 1006
|||||| |||| ||| || ||||||| | || ||||||| | ||||| ||||| |||
Sbjct 910 -ATCTAT--TTTTATCATTT-ATTTGTTGCTCATATATATGTGGTGTTTATGTAAAGATG 965
Query 1007 TTT 1009
|||
Sbjct 966 TTT 968
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42011454534
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5