BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G30320.1

Length=486
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg491719 jgi|Araly1|491719|fgenesh2_kg.7__1152__AT4G30320.1         597    2e-170


> Ahg491719 jgi|Araly1|491719|fgenesh2_kg.7__1152__AT4G30320.1
Length=395

 Score =  597 bits (323),  Expect = 2e-170
 Identities = 371/395 (94%), Gaps = 0/395 (0%)
 Strand=Plus/Plus

Query  91   ATGGGTCCACAAAACGCAGCAAGAGCTCATTTAAGGCTCAAACCGCTAAAGTGGGACGCC  150
            |||| ||||||||||||||||||||||| ||||||||||||||||||||| |||||||||
Sbjct  1    ATGGCTCCACAAAACGCAGCAAGAGCTCGTTTAAGGCTCAAACCGCTAAAATGGGACGCC  60

Query  151  AAATTGGCCCGTTACGCGCAATGGTGGGCTAACCAGAGACGCGGTGACTGCGCCTTGACC  210
            |||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||| |
Sbjct  61   AAATTGGCCCGTTATGCGCAATGGTGGGCTAACCAGAGACGCCGTGACTGCGCCTTGATC  120

Query  211  CATTCCAATGGACCCTATGGTGAGAATCTCTTTTGGGGCTCAGGCAATAGATGGGGTCCA  270
            |||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||
Sbjct  121  CATTCCAATGGACCCTATGGTGAGAATCTCTTTTGGGGCTCAGGAAATAGATGGAGTCCA  180

Query  271  TCTCAAGCCGCCTATGGATGGTTGTCTGAAGCAAGGAGCTATAACTATAGATCTAACTCG  330
             | ||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||
Sbjct  181  GCCCAAGCCGCCTATGGATGGTTGTCCGAAGCAAGGAGCTATAACTATAGATCCAACTCG  240

Query  331  TGCAACTCCGAGATGTGTGGCCATTACACACAAATCGTGTGGAAGAACACACAAAAGATT  390
            |||||||||||||||||||||||||||||||||||||||||||| || ||||| ||||||
Sbjct  241  TGCAACTCCGAGATGTGTGGCCATTACACACAAATCGTGTGGAAAAAAACACAGAAGATT  300

Query  391  GGTTGCGCTCACGTGATCTGCAATGGCGGAGGAGGCGTATTCTTGACTTGCAATTATGAT  450
            || || |||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct  301  GGCTGTGCTCACGTGATCTGCAATGGCGGAGGAGGCGTGTTCTTGACTTGCAATTACGAT  360

Query  451  CCACCGGGGAATTTTCTTGGTAGGAAGCCTTATTG  485
            || ||||| |||||||||||||  ||||| |||||
Sbjct  361  CCGCCGGGAAATTTTCTTGGTACTAAGCCGTATTG  395



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 17627882118


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5