BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G30330.1

Length=593
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg944958 jgi|Araly1|944958|scaffold_701187.1                        501    2e-141


> Ahg944958 jgi|Araly1|944958|scaffold_701187.1
Length=307

 Score =  501 bits (271),  Expect = 2e-141
 Identities = 296/308 (96%), Gaps = 1/308 (0%)
 Strand=Plus/Plus

Query  81   CACTTGCAACTTCAGGCAATTATGGCGAGCACCAAAGTTCAGAGGATTATGACTCAACCC  140
            |||||||||||||| ||||  ||||||||||| |||||||||||||||||||||||||||
Sbjct  1    CACTTGCAACTTCA-GCAACCATGGCGAGCACTAAAGTTCAGAGGATTATGACTCAACCC  59

Query  141  ATTAATCTGATTTTCAGATTTCTCCAAAGTAAAGCTCGGATTCAGATTTGGCTTTTTGAG  200
            ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct  60   ATTAATCTGATTTTCAGGTTTCTTCAAAGTAAAGCTCGGATTCAGATTTGGCTTTTTGAG  119

Query  201  CAGAAAGATTTGAGGATTGAGGGACGAATTACTGGTTTTGATGAGTACATGAATTTGGTG  260
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  120  CAGAAAGATTTGAGGATTGAGGGACGAATTACTGGTTTTGATGAGTACATGAATTTGGTG  179

Query  261  CTGGATGAGGCAGAGGAAGTGAGCATCAAGAAGAAAACCAGAAAACCACTTGGTCGGATT  320
            ||||||||||| |||||||||||||||||||||||||||||||||||||||||  |||||
Sbjct  180  CTGGATGAGGCTGAGGAAGTGAGCATCAAGAAGAAAACCAGAAAACCACTTGGAAGGATT  239

Query  321  TTGCTTAAAGGAGACAACATAACTCTCATGATGAACGCGGGCAAGTGATGTCTGTTGCAG  380
            ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct  240  TTGCTCAAAGGAGACAACATAACTCTCATGATGAACGCGGGCAAGTGATGTCTGTTGCTG  299

Query  381  TGCAAGGA  388
            || |||||
Sbjct  300  TGGAAGGA  307



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 21710530141


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5