BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G30340.1 Length=1779 Score E Sequences producing significant alignments: (Bits) Value Ahg889083 jgi|Araly1|889083|Al_scaffold_0007_1069 2344 0.0 Ahg480776 jgi|Araly1|480776|fgenesh2_kg.3__3477__AT2G18730.1 1216 0.0 > Ahg889083 jgi|Araly1|889083|Al_scaffold_0007_1069 Length=1485 Score = 2344 bits (1269), Expect = 0.0 Identities = 1418/1489 (95%), Gaps = 14/1489 (1%) Strand=Plus/Plus Query 127 ATGGAGGAGACGCCGAGATCAGTCGGCGAAGCATCGACGACTAATTTCGTGGCGGCGAGA 186 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 ATGGAGGAGACGCCGAGATCAGTCGGCGAAGCATCGACGACTAATTTCGTGGCGGCGAGA 60 Query 187 CCGTCGGCGAAGACCGATGATGCAGTGACGATGAGAGGTTGTGGTTTTGCTAATCTTGCC 246 ||| ||||||||||| ||||||||||| |||| ||||||||||||||||||||||||| Sbjct 61 CCGACGGCGAAGACC---GATGCAGTGACAATGAAAGGTTGTGGTTTTGCTAATCTTGCC 117 Query 247 TTGGTTGGTATAGACAAAGAAGAGCTTCGAGGGAGACTAGCGATGCCTGAGTATCTTCGT 306 |||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||| Sbjct 118 TTGGTTGGTATAGACAGAGAAGAGCTTCGTGGGAGACTAGCGATGCCTGAGTATCTTCGT 177 Query 307 ATAGCTATGAGAGATTGTATCAAGAGGAAAGATTCAACAGAGATTTCTGATCATTTGTTA 366 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || Sbjct 178 CTAGCTATGAGAGATTGTATCAAGAGGAAAGATTCAACAGAGATTCCTGATCATTTGCTA 237 Query 367 CTTCCTGGAGGCGCCGCCGCTGATATGGCTCCTCACGCGCCAATGGTTGTGTTTATTAAC 426 |||||||| ||||||||||| |||||||||||||||||||| |||||||||||||||||| Sbjct 238 CTTCCTGGCGGCGCCGCCGCAGATATGGCTCCTCACGCGCCTATGGTTGTGTTTATTAAC 297 Query 427 CCGAAAAGTGGTGGTCGTCATGGTCCTGTTCTTAAAGAGAGGCTTCAACAATTGATGACT 486 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 298 CCGAAAAGTGGTGGTCGTCACGGTCCTGTTCTTAAAGAGAGGCTTCAACAATTGATGACT 357 Query 487 GAAGAACAGGTATTTGATCTCACAGAAGTGAAGCCTCATGAATTTGTACGGTACGGTTTG 546 ||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| Sbjct 358 GAAGAACAGGTATTTGATCTCACTGAGGTGAAGCCTCATGAATTTGTACGGTACGGTTTG 417 Query 547 GGGTGCTTGGACACATTGGCTGCT-AAAGGAGATGAATGTGCAAGAGAATGCAGAGAAAA 605 ||||||||||| |||||||| | ||||||||||||||||||||||||||||||||||| Sbjct 418 GGGTGCTTGGAGACATTGGC-ATTGAAAGGAGATGAATGTGCAAGAGAATGCAGAGAAAA 476 Query 606 GATACGGATCATGGTAGCAGGCGGTGATGGTACCGTTGGTTGGGTTCTTGGATGTCTCGG 665 ||| || |||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 477 GATGCGTATCATGGTAGCAGGTGGTGATGGTACCGTTGGTTGGGTTCTTGGATGTCTCGG 536 Query 666 TGAGCTTCATAAAGATGGTAAATCACATATTCCTCCTGTTGGAGTTATACCTCTTGGTAC 725 ||||||||||||||| || ||||||||||||||||||||||||||||| ||||| ||||| Sbjct 537 TGAGCTTCATAAAGACGGAAAATCACATATTCCTCCTGTTGGAGTTATCCCTCTCGGTAC 596 Query 726 AGGAAATGACCTCTCCAGGAGTTTTAGTTGGGGTGGTTCATTCCCTTTTGCTTGGAGATC 785 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 597 AGGAAATGACCTCTCCAGGAGTTTTGGTTGGGGTGGTTCATTCCCTTTTGCTTGGAGATC 656 Query 786 TGCTATGAAAAGAACATTACATCGAGCAACTTTAGGTTCCATTGCTCGATTAGATAGCTG 845 |||||||||||||||||||||||||||||||||||||||| || |||||||||| ||||| Sbjct 657 TGCTATGAAAAGAACATTACATCGAGCAACTTTAGGTTCCGTTTCTCGATTAGACAGCTG 716 Query 846 GAAGATTGTAGTGTCGATGCCATCTGGAGAAGTCGTTGATCCTCCTTATTCTTTGAAGCC 905 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 717 GAAGATTGTAGTGTCAATGCCATCTGGAGAAGTCGTTGATCCTCCTTATTCTTTGAAGCC 776 Query 906 TACAATAGAGGAAACTGCACTTGATCAGGCTTTGGATGCTGAT-G-GA--G--ATGTACC 959 ||||||||||||||||||||||||||||||||||||||||||| | || | ||||||| Sbjct 777 TACAATAGAGGAAACTGCACTTGATCAGGCTTTGGATGCTGATGGAGATGGAAATGTACC 836 Query 960 TCCTAAAGCAAAGTCTTATGAAGGAGTGTTCTACAACTACTTCAGCATAGGTATGGATGC 1019 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 837 TCCTAAAGCAAAGTCTTATGAAGGAGTGTTCTACAACTACTTTAGCATAGGTATGGATGC 896 Query 1020 TCAAGTTGCATATGGGTTCCACCATCTTCGCAATGAGAAACCGTATCTAGCTCAAGGCCC 1079 |||||||||||| || ||||| ||||||||||||||||||||||||||||||||||| || Sbjct 897 TCAAGTTGCATACGGATTCCATCATCTTCGCAATGAGAAACCGTATCTAGCTCAAGGACC 956 Query 1080 TGTTACAAATAAGATTATCTATTCGAGTTACAGTTGTACTCAAGGTTGGTTTTGCACGCC 1139 |||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| Sbjct 957 TGTTACAAATAAGATTATATATTCAAGTTACAGTTGTACTCAAGGTTGGTTTTGCACGCC 1016 Query 1140 TTGTGTCAACAATCCAGCTTTAAGGGGACTAAGAAACATTATGAAAATCCATATTAAAAA 1199 ||||||||||||||||| ||||||||||||||||||||| ||||||||||| |||||||| Sbjct 1017 TTGTGTCAACAATCCAGGTTTAAGGGGACTAAGAAACATAATGAAAATCCACATTAAAAA 1076 Query 1200 GGCAAATTGTTCCGAGTGGGAAGAGATCCATGTTCCTAAGAGCGTAAGATCTATTGTGGT 1259 ||||||||| ||||| ||||||||||||||||| ||||| || || ||||| |||||||| Sbjct 1077 GGCAAATTGCTCCGAATGGGAAGAGATCCATGTCCCTAAAAGTGTGAGATCGATTGTGGT 1136 Query 1260 GTTGAATCTTTATAACTATGGAAGTGGAAGACATCCATGGGGTAATCTCAGACCAAAATA 1319 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1137 ATTGAATCTTTATAACTATGGAAGTGGAAGACATCCATGGGGTAATCTCAGACCAAAATA 1196 Query 1320 TTTAGAG-A--AGAGAGGATTTGTGGAGGCGCATTGTGATGACGGACTGATAGAGATCTT 1376 ||||||| | |||||||||||||||||||||||||||| ||||| ||||||||||| || Sbjct 1197 TTTAGAGAAGCAGAGAGGATTTGTGGAGGCGCATTGTGACGACGGGCTGATAGAGATATT 1256 Query 1377 CGGTTTAAAGCAAGGTTGGCATGCGTCATTTGTAATGGCTGAAATTATCTCAGCTAAGCA 1436 |||||||||||||||||||||||| ||||||||||||||| |||| |||||||||||||| Sbjct 1257 CGGTTTAAAGCAAGGTTGGCATGCTTCATTTGTAATGGCTCAAATCATCTCAGCTAAGCA 1316 Query 1437 CATTGCTCAGGCGGCTGCGATTAGATTTGAACTAAGAGGAGGTGATTGGAAAAATGCATT 1496 |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| || Sbjct 1317 CATTGCTCAGGCGGCTGCTATTAGATTTGAACTAAGAGGAGGTGATTGGAAAAATGCGTT 1376 Query 1497 CTTGCAAATGGATGGTGAACCATGGAAACAACCGATGAAGAGTGATTATTCGACTTTTGT 1556 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 1377 CTTGCAAATGGATGGTGAGCCATGGAAACAACCGATGAAGAGTGATTATTCGACTTTTGT 1436 Query 1557 AGAGATAAAAAAGGTTCCTTTTCAATCGTTAATGATCAATGGCGAATGA 1605 ||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 1437 AGAGATAAAAAAGGTTCCTTTTCAATCGTTAATGATCAACGGCGAATGA 1485 > Ahg480776 jgi|Araly1|480776|fgenesh2_kg.3__3477__AT2G18730.1 Length=1697 Score = 1216 bits (658), Expect = 0.0 Identities = 1174/1420 (83%), Gaps = 47/1420 (3%) Strand=Plus/Plus Query 213 GACGATGAGAGGTTGTGGTTTTGCTAATCTTG-CCTTGGTTGGTATAGACAAAGAAGAGC 271 |||||||||||||||||| | ||||||| || | | ||||||| |||| |||| ||||| Sbjct 185 GACGATGAGAGGTTGTGGACTCGCTAATC-TGACATGGGTTGGTGTAGATAAAGTAGAGC 243 Query 272 TTCGAGGGAGACTAG-CGATGCCTGAGTATCTTCGTATAGCTATGAGAGATTGTATCAAG 330 |||| ||| | | ||||||||||||||||||| | |||||| | || |||||||| Sbjct 244 TTCGTCAGAG-GTTGATGATGCCTGAGTATCTTCGTCTCGCTATGCGTGACTGTATCAA- 301 Query 331 A-GGAAAGATTCAACAGAGATTTCTGATCATTTG-TTACTTCCTGGAGGCGCCGCCGCTG 388 | |||||||||| | | |||| ||||||||||| || |||||||| || || | |||| Sbjct 302 ACGGAAAGATTCCTCGGCGATTCCTGATCATTTGCTT-CTTCCTGGTGGTGCTGTTGCTG 360 Query 389 ATATGGCTCCTCACGCGCCAATGGTTGTGTTT-ATTAACCCGAAAAGTGGTGGTCGTCAT 447 ||||||||||||| || || |||||||| ||| |||||||| || ||||||||||||| Sbjct 361 ATATGGCTCCTCATGCTCCTATGGTTGT-TTTCATTAACCCCAATTCTGGTGGTCGTCAT 419 Query 448 GGTCCTGTTCTTAAAGAGAGGCTTCAACAATTGATGA-CTGAAGAACAGGTATTTGATCT 506 || ||||| |||||||||||||||||||| ||||||| | || |||||||| ||||| || Sbjct 420 GGACCTGTGCTTAAAGAGAGGCTTCAACAGTTGATGAGC-GAGGAACAGGTGTTTGACCT 478 Query 507 CACAGAAGTGAAGCCTCATGAATTTGTACGGTACGGTTTGGGGTGCTTGGACACATTGGC 566 ||| ||||||||||||||||| ||||| || ||||| |||||||| ||||| | | |||| Sbjct 479 CACGGAAGTGAAGCCTCATGAGTTTGTTCGATACGGGTTGGGGTGTTTGGAGAAAGTGGC 538 Query 567 TGCTAAAGGAGATGAATGTGCAAGAGAATGCAGAGAAAAGAT-ACGGATCATGGTAGCAG 625 || |||||||||||||||||| ||||||||||| || | | | |||| ||||| |||| Sbjct 539 AGCGGAAGGAGATGAATGTGCAAAAGAATGCAGAGCAAGGTTGA-GGATTATGGTTGCAG 597 Query 626 GCGGTGATGGTACCGTTGGTTGGGTTCTTGGATGTCTCGGTGAGCTTCATAAAGATGGTA 685 | ||||||||||| ||||||||||||||||||||||| || |||||| ||||||| || | Sbjct 598 GTGGTGATGGTACTGTTGGTTGGGTTCTTGGATGTCTTGGAGAGCTTAATAAAGAAGG-A 656 Query 686 AA-TCACATATTCCTCCTGTTGGAGTTATACCTCTTGGTACAGGAAATGACCTCTCCAGG 744 || || ||||||||||||||||||||||| ||||| |||||||| ||||| ||||| ||| Sbjct 657 AAGTCTCATATTCCTCCTGTTGGAGTTATTCCTCTCGGTACAGGGAATGATCTCTCAAGG 716 Query 745 AGTTTTAGTTGGGGTGGTTCATTCCCTTTTGCTTGGAGATCTGCTATGAAAAGAACATTA 804 |||||| ||||||||||||| ||||||||||| |||||||| ||| | ||||||||| | Sbjct 717 AGTTTTGGTTGGGGTGGTTCGTTCCCTTTTGCATGGAGATCCGCTGTTAAAAGAACACTC 776 Query 805 CATCGAGCAACTTTAGGTTCCA-TTGCTCGA-TTAGATAGCTGGAAGATTGTAGTGTCGA 862 ||||| |||| | | || |||| ||||| || || || |||||||||||| ||||||| | Sbjct 777 CATCGCGCAAGTAT-GGGTCCAGTTGCTAGACTT-GACAGCTGGAAGATTTTAGTGTCAA 834 Query 863 TGCCATCTGGAGAAGTCGTTGATCCTCCTTATTCTTTGAAGCCTACAATAGAGG-AAACT 921 ||||||||||||||||||| ||||||||||||||||| || || | |||| |||| Sbjct 835 TGCCATCTGGAGAAGTCGTGGATCCTCCTTATTCTTTAAAACC--C-GCCGAGGAAAAC- 890 Query 922 GCACTTGATCAGGCTTTGGATGC-TG-ATGGAGATGTACCTCCTA-AAGC-AAAGTCTTA 977 | ||||||||||| |||||| || | || ||| | ||||| | || | || ||| Sbjct 891 GAACTTGATCAGGGTTTGGACGCGGGAAT--AGACGCGCCTCC-ACTGGCGATGGT-TTA 946 Query 978 TGAAGGAGTGTTCTACAACTACTTCAGCATAGGTATGGATGCTCAAGTTGCATATGGGTT 1037 |||||| || |||||||| ||||| |||||||||||||||||||||||||||||||| || Sbjct 947 TGAAGGTGTTTTCTACAATTACTTAAGCATAGGTATGGATGCTCAAGTTGCATATGGCTT 1006 Query 1038 CCACCATCTTCGCAATGAG-AAACCGTATCTAGCTCAAGGCCCTGTTACAAATAAGATTA 1096 |||||||||||||| | ||||| ||||| |||||||||||| || |||||||||||| Sbjct 1007 TCACCATCTTCGCAAC-ACTAAACCATATCTTGCTCAAGGCCCTATTTCAAATAAGATTA 1065 Query 1097 TCTATTCGAG-TTACAGTTGTACTCAAGGTTGGTTTTGCACGCCTTGTGTCAACAATCCA 1155 | ||||| || || |||||||||| ||||||||||||||||||||||||||| ||||| Sbjct 1066 TATATTC-AGGTTTTGGTTGTACTCAGGGTTGGTTTTGCACGCCTTGTGTCAACGATCCA 1124 Query 1156 GCTTTAAGGGGACTAAGAAACATTATGAAAATCCATATTAAAAAGGCAAATTGTTC-CGA 1214 | |||||||||||| || ||||| ||||||||||| || ||||||| ||||| || | | Sbjct 1125 GGTTTAAGGGGACTTAGGAACATAATGAAAATCCACATCAAAAAGGTTAATTGCTCTCAA 1184 Query 1215 GTGGGAAGAGATC-CATGTTCCTAAGAGCGTAAGATCTATTGTGGTGTTGAATCTTTATA 1273 ||||| |||||| || || || || | || ||||| ||||| | ||||||||| | | Sbjct 1185 -TGGGAGGAGATCGCA-GTCCCGAAAAATGTGAGATCAATTGTCGCATTGAATCTTCACA 1242 Query 1274 ACTATGGAAGTGGAAGACATCCATGGGGTAATCTCAGACCAAAATATTTAGAGAAGAGAG 1333 ||||||||| ||||| ||||| ||||||||||| | ||| | ||| |||||||||||| Sbjct 1243 GCTATGGAAGCGGAAGCCATCCGTGGGGTAATCTGAAACCGGACTATCTAGAGAAGAGAG 1302 Query 1334 GATTTGTGGAGGCGCATTGTGATGACGGACTGATAGAGATCTTCGGTTTAAAGCAAGGTT 1393 | |||||||| || ||||||||||| || |||||||||| |||||||| |||||||| | Sbjct 1303 GCTTTGTGGAAGCACATTGTGATGATGGTTTGATAGAGATTTTCGGTTTTAAGCAAGGAT 1362 Query 1394 GGCATGCGTCATTTGTAATGGCTGAAATTATCTCAGCTAAGCACATTGCTCAGGCGGCTG 1453 |||||||||||||||| |||||||| | || || || || ||||| |||||||| |||| Sbjct 1363 GGCATGCGTCATTTGTCATGGCTGAGCTCATTTCTGCCAAACACATAGCTCAGGCTGCTG 1422 Query 1454 C-GATTAGATTTGAACTAAGAGGAGGTGATTGGAAAAATGCATTCTTGCAAATGGATGGT 1512 | | | |||||||| |||||||||||||| |||| | | || ||||||||||||||||| Sbjct 1423 CTG-TAAGATTTGAGCTAAGAGGAGGTGACTGGAGAGACGCGTTCTTGCAAATGGATGGC 1481 Query 1513 GAACCATGGAAACAACCGATGAAG-AGTGATTATTCGACTTTTGTAGAGATAAAAAAGGT 1571 || |||||||| ||||| |||| | | |||||| || || ||||| ||||| || ||||| Sbjct 1482 GAGCCATGGAAGCAACCAATGA-GCACTGATTACTCAACATTTGTGGAGATTAAGAAGGT 1540 Query 1572 TCCTTTTCAATCGT-TAATGATCAATGGCGAATGATCGAG 1610 |||||||||||| | | ||||| ||| ||||||| ||| Sbjct 1541 TCCTTTTCAATC-TATGATGATAAATAATGAATGATTGAG 1579 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 66772199485 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5