BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G30340.1
Length=1779
Score E
Sequences producing significant alignments: (Bits) Value
Ahg889083 jgi|Araly1|889083|Al_scaffold_0007_1069 2344 0.0
Ahg480776 jgi|Araly1|480776|fgenesh2_kg.3__3477__AT2G18730.1 1216 0.0
> Ahg889083 jgi|Araly1|889083|Al_scaffold_0007_1069
Length=1485
Score = 2344 bits (1269), Expect = 0.0
Identities = 1418/1489 (95%), Gaps = 14/1489 (1%)
Strand=Plus/Plus
Query 127 ATGGAGGAGACGCCGAGATCAGTCGGCGAAGCATCGACGACTAATTTCGTGGCGGCGAGA 186
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGAGGAGACGCCGAGATCAGTCGGCGAAGCATCGACGACTAATTTCGTGGCGGCGAGA 60
Query 187 CCGTCGGCGAAGACCGATGATGCAGTGACGATGAGAGGTTGTGGTTTTGCTAATCTTGCC 246
||| ||||||||||| ||||||||||| |||| |||||||||||||||||||||||||
Sbjct 61 CCGACGGCGAAGACC---GATGCAGTGACAATGAAAGGTTGTGGTTTTGCTAATCTTGCC 117
Query 247 TTGGTTGGTATAGACAAAGAAGAGCTTCGAGGGAGACTAGCGATGCCTGAGTATCTTCGT 306
|||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||
Sbjct 118 TTGGTTGGTATAGACAGAGAAGAGCTTCGTGGGAGACTAGCGATGCCTGAGTATCTTCGT 177
Query 307 ATAGCTATGAGAGATTGTATCAAGAGGAAAGATTCAACAGAGATTTCTGATCATTTGTTA 366
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 178 CTAGCTATGAGAGATTGTATCAAGAGGAAAGATTCAACAGAGATTCCTGATCATTTGCTA 237
Query 367 CTTCCTGGAGGCGCCGCCGCTGATATGGCTCCTCACGCGCCAATGGTTGTGTTTATTAAC 426
|||||||| ||||||||||| |||||||||||||||||||| ||||||||||||||||||
Sbjct 238 CTTCCTGGCGGCGCCGCCGCAGATATGGCTCCTCACGCGCCTATGGTTGTGTTTATTAAC 297
Query 427 CCGAAAAGTGGTGGTCGTCATGGTCCTGTTCTTAAAGAGAGGCTTCAACAATTGATGACT 486
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 298 CCGAAAAGTGGTGGTCGTCACGGTCCTGTTCTTAAAGAGAGGCTTCAACAATTGATGACT 357
Query 487 GAAGAACAGGTATTTGATCTCACAGAAGTGAAGCCTCATGAATTTGTACGGTACGGTTTG 546
||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 358 GAAGAACAGGTATTTGATCTCACTGAGGTGAAGCCTCATGAATTTGTACGGTACGGTTTG 417
Query 547 GGGTGCTTGGACACATTGGCTGCT-AAAGGAGATGAATGTGCAAGAGAATGCAGAGAAAA 605
||||||||||| |||||||| | |||||||||||||||||||||||||||||||||||
Sbjct 418 GGGTGCTTGGAGACATTGGC-ATTGAAAGGAGATGAATGTGCAAGAGAATGCAGAGAAAA 476
Query 606 GATACGGATCATGGTAGCAGGCGGTGATGGTACCGTTGGTTGGGTTCTTGGATGTCTCGG 665
||| || |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 477 GATGCGTATCATGGTAGCAGGTGGTGATGGTACCGTTGGTTGGGTTCTTGGATGTCTCGG 536
Query 666 TGAGCTTCATAAAGATGGTAAATCACATATTCCTCCTGTTGGAGTTATACCTCTTGGTAC 725
||||||||||||||| || ||||||||||||||||||||||||||||| ||||| |||||
Sbjct 537 TGAGCTTCATAAAGACGGAAAATCACATATTCCTCCTGTTGGAGTTATCCCTCTCGGTAC 596
Query 726 AGGAAATGACCTCTCCAGGAGTTTTAGTTGGGGTGGTTCATTCCCTTTTGCTTGGAGATC 785
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 597 AGGAAATGACCTCTCCAGGAGTTTTGGTTGGGGTGGTTCATTCCCTTTTGCTTGGAGATC 656
Query 786 TGCTATGAAAAGAACATTACATCGAGCAACTTTAGGTTCCATTGCTCGATTAGATAGCTG 845
|||||||||||||||||||||||||||||||||||||||| || |||||||||| |||||
Sbjct 657 TGCTATGAAAAGAACATTACATCGAGCAACTTTAGGTTCCGTTTCTCGATTAGACAGCTG 716
Query 846 GAAGATTGTAGTGTCGATGCCATCTGGAGAAGTCGTTGATCCTCCTTATTCTTTGAAGCC 905
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 717 GAAGATTGTAGTGTCAATGCCATCTGGAGAAGTCGTTGATCCTCCTTATTCTTTGAAGCC 776
Query 906 TACAATAGAGGAAACTGCACTTGATCAGGCTTTGGATGCTGAT-G-GA--G--ATGTACC 959
||||||||||||||||||||||||||||||||||||||||||| | || | |||||||
Sbjct 777 TACAATAGAGGAAACTGCACTTGATCAGGCTTTGGATGCTGATGGAGATGGAAATGTACC 836
Query 960 TCCTAAAGCAAAGTCTTATGAAGGAGTGTTCTACAACTACTTCAGCATAGGTATGGATGC 1019
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 837 TCCTAAAGCAAAGTCTTATGAAGGAGTGTTCTACAACTACTTTAGCATAGGTATGGATGC 896
Query 1020 TCAAGTTGCATATGGGTTCCACCATCTTCGCAATGAGAAACCGTATCTAGCTCAAGGCCC 1079
|||||||||||| || ||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 897 TCAAGTTGCATACGGATTCCATCATCTTCGCAATGAGAAACCGTATCTAGCTCAAGGACC 956
Query 1080 TGTTACAAATAAGATTATCTATTCGAGTTACAGTTGTACTCAAGGTTGGTTTTGCACGCC 1139
|||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 957 TGTTACAAATAAGATTATATATTCAAGTTACAGTTGTACTCAAGGTTGGTTTTGCACGCC 1016
Query 1140 TTGTGTCAACAATCCAGCTTTAAGGGGACTAAGAAACATTATGAAAATCCATATTAAAAA 1199
||||||||||||||||| ||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 1017 TTGTGTCAACAATCCAGGTTTAAGGGGACTAAGAAACATAATGAAAATCCACATTAAAAA 1076
Query 1200 GGCAAATTGTTCCGAGTGGGAAGAGATCCATGTTCCTAAGAGCGTAAGATCTATTGTGGT 1259
||||||||| ||||| ||||||||||||||||| ||||| || || ||||| ||||||||
Sbjct 1077 GGCAAATTGCTCCGAATGGGAAGAGATCCATGTCCCTAAAAGTGTGAGATCGATTGTGGT 1136
Query 1260 GTTGAATCTTTATAACTATGGAAGTGGAAGACATCCATGGGGTAATCTCAGACCAAAATA 1319
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1137 ATTGAATCTTTATAACTATGGAAGTGGAAGACATCCATGGGGTAATCTCAGACCAAAATA 1196
Query 1320 TTTAGAG-A--AGAGAGGATTTGTGGAGGCGCATTGTGATGACGGACTGATAGAGATCTT 1376
||||||| | |||||||||||||||||||||||||||| ||||| ||||||||||| ||
Sbjct 1197 TTTAGAGAAGCAGAGAGGATTTGTGGAGGCGCATTGTGACGACGGGCTGATAGAGATATT 1256
Query 1377 CGGTTTAAAGCAAGGTTGGCATGCGTCATTTGTAATGGCTGAAATTATCTCAGCTAAGCA 1436
|||||||||||||||||||||||| ||||||||||||||| |||| ||||||||||||||
Sbjct 1257 CGGTTTAAAGCAAGGTTGGCATGCTTCATTTGTAATGGCTCAAATCATCTCAGCTAAGCA 1316
Query 1437 CATTGCTCAGGCGGCTGCGATTAGATTTGAACTAAGAGGAGGTGATTGGAAAAATGCATT 1496
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct 1317 CATTGCTCAGGCGGCTGCTATTAGATTTGAACTAAGAGGAGGTGATTGGAAAAATGCGTT 1376
Query 1497 CTTGCAAATGGATGGTGAACCATGGAAACAACCGATGAAGAGTGATTATTCGACTTTTGT 1556
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1377 CTTGCAAATGGATGGTGAGCCATGGAAACAACCGATGAAGAGTGATTATTCGACTTTTGT 1436
Query 1557 AGAGATAAAAAAGGTTCCTTTTCAATCGTTAATGATCAATGGCGAATGA 1605
||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1437 AGAGATAAAAAAGGTTCCTTTTCAATCGTTAATGATCAACGGCGAATGA 1485
> Ahg480776 jgi|Araly1|480776|fgenesh2_kg.3__3477__AT2G18730.1
Length=1697
Score = 1216 bits (658), Expect = 0.0
Identities = 1174/1420 (83%), Gaps = 47/1420 (3%)
Strand=Plus/Plus
Query 213 GACGATGAGAGGTTGTGGTTTTGCTAATCTTG-CCTTGGTTGGTATAGACAAAGAAGAGC 271
|||||||||||||||||| | ||||||| || | | ||||||| |||| |||| |||||
Sbjct 185 GACGATGAGAGGTTGTGGACTCGCTAATC-TGACATGGGTTGGTGTAGATAAAGTAGAGC 243
Query 272 TTCGAGGGAGACTAG-CGATGCCTGAGTATCTTCGTATAGCTATGAGAGATTGTATCAAG 330
|||| ||| | | ||||||||||||||||||| | |||||| | || ||||||||
Sbjct 244 TTCGTCAGAG-GTTGATGATGCCTGAGTATCTTCGTCTCGCTATGCGTGACTGTATCAA- 301
Query 331 A-GGAAAGATTCAACAGAGATTTCTGATCATTTG-TTACTTCCTGGAGGCGCCGCCGCTG 388
| |||||||||| | | |||| ||||||||||| || |||||||| || || | ||||
Sbjct 302 ACGGAAAGATTCCTCGGCGATTCCTGATCATTTGCTT-CTTCCTGGTGGTGCTGTTGCTG 360
Query 389 ATATGGCTCCTCACGCGCCAATGGTTGTGTTT-ATTAACCCGAAAAGTGGTGGTCGTCAT 447
||||||||||||| || || |||||||| ||| |||||||| || |||||||||||||
Sbjct 361 ATATGGCTCCTCATGCTCCTATGGTTGT-TTTCATTAACCCCAATTCTGGTGGTCGTCAT 419
Query 448 GGTCCTGTTCTTAAAGAGAGGCTTCAACAATTGATGA-CTGAAGAACAGGTATTTGATCT 506
|| ||||| |||||||||||||||||||| ||||||| | || |||||||| ||||| ||
Sbjct 420 GGACCTGTGCTTAAAGAGAGGCTTCAACAGTTGATGAGC-GAGGAACAGGTGTTTGACCT 478
Query 507 CACAGAAGTGAAGCCTCATGAATTTGTACGGTACGGTTTGGGGTGCTTGGACACATTGGC 566
||| ||||||||||||||||| ||||| || ||||| |||||||| ||||| | | ||||
Sbjct 479 CACGGAAGTGAAGCCTCATGAGTTTGTTCGATACGGGTTGGGGTGTTTGGAGAAAGTGGC 538
Query 567 TGCTAAAGGAGATGAATGTGCAAGAGAATGCAGAGAAAAGAT-ACGGATCATGGTAGCAG 625
|| |||||||||||||||||| ||||||||||| || | | | |||| ||||| ||||
Sbjct 539 AGCGGAAGGAGATGAATGTGCAAAAGAATGCAGAGCAAGGTTGA-GGATTATGGTTGCAG 597
Query 626 GCGGTGATGGTACCGTTGGTTGGGTTCTTGGATGTCTCGGTGAGCTTCATAAAGATGGTA 685
| ||||||||||| ||||||||||||||||||||||| || |||||| ||||||| || |
Sbjct 598 GTGGTGATGGTACTGTTGGTTGGGTTCTTGGATGTCTTGGAGAGCTTAATAAAGAAGG-A 656
Query 686 AA-TCACATATTCCTCCTGTTGGAGTTATACCTCTTGGTACAGGAAATGACCTCTCCAGG 744
|| || ||||||||||||||||||||||| ||||| |||||||| ||||| ||||| |||
Sbjct 657 AAGTCTCATATTCCTCCTGTTGGAGTTATTCCTCTCGGTACAGGGAATGATCTCTCAAGG 716
Query 745 AGTTTTAGTTGGGGTGGTTCATTCCCTTTTGCTTGGAGATCTGCTATGAAAAGAACATTA 804
|||||| ||||||||||||| ||||||||||| |||||||| ||| | ||||||||| |
Sbjct 717 AGTTTTGGTTGGGGTGGTTCGTTCCCTTTTGCATGGAGATCCGCTGTTAAAAGAACACTC 776
Query 805 CATCGAGCAACTTTAGGTTCCA-TTGCTCGA-TTAGATAGCTGGAAGATTGTAGTGTCGA 862
||||| |||| | | || |||| ||||| || || || |||||||||||| ||||||| |
Sbjct 777 CATCGCGCAAGTAT-GGGTCCAGTTGCTAGACTT-GACAGCTGGAAGATTTTAGTGTCAA 834
Query 863 TGCCATCTGGAGAAGTCGTTGATCCTCCTTATTCTTTGAAGCCTACAATAGAGG-AAACT 921
||||||||||||||||||| ||||||||||||||||| || || | |||| ||||
Sbjct 835 TGCCATCTGGAGAAGTCGTGGATCCTCCTTATTCTTTAAAACC--C-GCCGAGGAAAAC- 890
Query 922 GCACTTGATCAGGCTTTGGATGC-TG-ATGGAGATGTACCTCCTA-AAGC-AAAGTCTTA 977
| ||||||||||| |||||| || | || ||| | ||||| | || | || |||
Sbjct 891 GAACTTGATCAGGGTTTGGACGCGGGAAT--AGACGCGCCTCC-ACTGGCGATGGT-TTA 946
Query 978 TGAAGGAGTGTTCTACAACTACTTCAGCATAGGTATGGATGCTCAAGTTGCATATGGGTT 1037
|||||| || |||||||| ||||| |||||||||||||||||||||||||||||||| ||
Sbjct 947 TGAAGGTGTTTTCTACAATTACTTAAGCATAGGTATGGATGCTCAAGTTGCATATGGCTT 1006
Query 1038 CCACCATCTTCGCAATGAG-AAACCGTATCTAGCTCAAGGCCCTGTTACAAATAAGATTA 1096
|||||||||||||| | ||||| ||||| |||||||||||| || ||||||||||||
Sbjct 1007 TCACCATCTTCGCAAC-ACTAAACCATATCTTGCTCAAGGCCCTATTTCAAATAAGATTA 1065
Query 1097 TCTATTCGAG-TTACAGTTGTACTCAAGGTTGGTTTTGCACGCCTTGTGTCAACAATCCA 1155
| ||||| || || |||||||||| ||||||||||||||||||||||||||| |||||
Sbjct 1066 TATATTC-AGGTTTTGGTTGTACTCAGGGTTGGTTTTGCACGCCTTGTGTCAACGATCCA 1124
Query 1156 GCTTTAAGGGGACTAAGAAACATTATGAAAATCCATATTAAAAAGGCAAATTGTTC-CGA 1214
| |||||||||||| || ||||| ||||||||||| || ||||||| ||||| || | |
Sbjct 1125 GGTTTAAGGGGACTTAGGAACATAATGAAAATCCACATCAAAAAGGTTAATTGCTCTCAA 1184
Query 1215 GTGGGAAGAGATC-CATGTTCCTAAGAGCGTAAGATCTATTGTGGTGTTGAATCTTTATA 1273
||||| |||||| || || || || | || ||||| ||||| | ||||||||| | |
Sbjct 1185 -TGGGAGGAGATCGCA-GTCCCGAAAAATGTGAGATCAATTGTCGCATTGAATCTTCACA 1242
Query 1274 ACTATGGAAGTGGAAGACATCCATGGGGTAATCTCAGACCAAAATATTTAGAGAAGAGAG 1333
||||||||| ||||| ||||| ||||||||||| | ||| | ||| ||||||||||||
Sbjct 1243 GCTATGGAAGCGGAAGCCATCCGTGGGGTAATCTGAAACCGGACTATCTAGAGAAGAGAG 1302
Query 1334 GATTTGTGGAGGCGCATTGTGATGACGGACTGATAGAGATCTTCGGTTTAAAGCAAGGTT 1393
| |||||||| || ||||||||||| || |||||||||| |||||||| |||||||| |
Sbjct 1303 GCTTTGTGGAAGCACATTGTGATGATGGTTTGATAGAGATTTTCGGTTTTAAGCAAGGAT 1362
Query 1394 GGCATGCGTCATTTGTAATGGCTGAAATTATCTCAGCTAAGCACATTGCTCAGGCGGCTG 1453
|||||||||||||||| |||||||| | || || || || ||||| |||||||| ||||
Sbjct 1363 GGCATGCGTCATTTGTCATGGCTGAGCTCATTTCTGCCAAACACATAGCTCAGGCTGCTG 1422
Query 1454 C-GATTAGATTTGAACTAAGAGGAGGTGATTGGAAAAATGCATTCTTGCAAATGGATGGT 1512
| | | |||||||| |||||||||||||| |||| | | || |||||||||||||||||
Sbjct 1423 CTG-TAAGATTTGAGCTAAGAGGAGGTGACTGGAGAGACGCGTTCTTGCAAATGGATGGC 1481
Query 1513 GAACCATGGAAACAACCGATGAAG-AGTGATTATTCGACTTTTGTAGAGATAAAAAAGGT 1571
|| |||||||| ||||| |||| | | |||||| || || ||||| ||||| || |||||
Sbjct 1482 GAGCCATGGAAGCAACCAATGA-GCACTGATTACTCAACATTTGTGGAGATTAAGAAGGT 1540
Query 1572 TCCTTTTCAATCGT-TAATGATCAATGGCGAATGATCGAG 1610
|||||||||||| | | ||||| ||| ||||||| |||
Sbjct 1541 TCCTTTTCAATC-TATGATGATAAATAATGAATGATTGAG 1579
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66772199485
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5