BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G30370.1
Length=1014
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491715 jgi|Araly1|491715|fgenesh2_kg.7__1148__AT4G30370.1 870 0.0
> Ahg491715 jgi|Araly1|491715|fgenesh2_kg.7__1148__AT4G30370.1
Length=680
Score = 870 bits (471), Expect = 0.0
Identities = 620/686 (90%), Gaps = 34/686 (5%)
Strand=Plus/Plus
Query 45 AAAAAGATGTCCGAATATTCCCGCATATAAATATCTATCAGACAAACTCTTTTGTACAAT 104
||||||||||||||||||||||||||||||||||||||||||| | | |
Sbjct 1 AAAAAGATGTCCGAATATTCCCGCATATAAATATCTATCAGAC--A-------G--C--- 46
Query 105 ATACTTTGAATCCGA-TAAATTTTCGATCTTCAAAATCCATAAAAATCTCTCCTTTATTT 163
||||||||||||| | |||| || ||| || | | |||||||||||||||| |
Sbjct 47 ATACTTTGAATCC-ATTAAA---AAAAT-TTC--GAT-CTTTAAAATCTCTCCTTTATCT 98
Query 164 AGCCC-T-AAAACAGAGTATTAGAGTTTGATTCG--TAAAAGAGAATATTTTTAATCTCC 219
||||| | ||||||| | |||||||||||||||| |||||||||| |||||||||||||
Sbjct 99 AGCCCGTGAAAACAG-G-ATTAGAGTTTGATTCGTATAAAAGAGAAGATTTTTAATCTCC 156
Query 220 GCCG-CA-AGT-CGATGTCGATAAC-GATTCCCTACGATGGCTCAATCTCCCGCGAGCCA 275
|||| || | |||||||||| || ||||||||||||||||||| |||| ||||||||
Sbjct 157 GCCGCCATCTTCCGATGTCGAT-ACATATTCCCTACGATGGCTCAAACTCCGGCGAGCCA 215
Query 276 TCACCGTCTCCACCGCCGCCAAAAGCGAACACGAAGAATCTACCGACGAAGATTCTCTCT 335
|| |||||||| ||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 216 TCTCCGTCTCCTCCGCCACCAAAAGCGAACACGAATAATCTACCGACGAAGATTCTCTCT 275
Query 336 AACTTCCTCATAGGTCTAATCATGATCCCTGTAGCTATAACCGCTTTTATCTTTATCCTC 395
|||||||||||||||||||| ||||||||||||||| ||||||| ||| |||||||||||
Sbjct 276 AACTTCCTCATAGGTCTAATTATGATCCCTGTAGCTGTAACCGCCTTTCTCTTTATCCTC 335
Query 396 ACGTCTCTCGGTTTCACCTTCTTCTTCGCTTTCTACTGGTTTCTTCAACGAAACTATCGC 455
||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 336 ACGTCTCTCGGCTTCACCTTCTTCTTCGCTTTCTACTGGTTTCTTCAACGAAATTATCGC 395
Query 456 CACCGTCTCCGCCGCCATCGCCGTCACGAATACTCAGATGGGTTATCTCCAAGATGCGTG 515
||||||||||| || |||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 396 CACCGTCTCCGTCGTCATCGCCGTCACCAATACTCAGATGGGTTATCTCCAAGATGCGTG 455
Query 516 AAGAGGCTTCCTCAATTCAAGTATTGTGAGCCTAGTTCAGAGTACGGAGGCGATGATTGT 575
|||||||||||||||||||||| ||||||||||| | ||||||||||| |||||||||||
Sbjct 456 AAGAGGCTTCCTCAATTCAAGTTTTGTGAGCCTAATACAGAGTACGGAAGCGATGATTGT 515
Query 576 GTTGTTTGTATCGATGGATTTAGACAAGGACAGTGGTGTCGGAAGCTGCCTCGATGTGGA 635
|| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 516 GTGGTTTGTATCGATGGATTCAGACAAGGACAGTGGTGTCGGAAGCTGCCTCGATGTGGA 575
Query 636 CATGTGTTTCACCGAAAGTGTGTGGACTTGTGGTTGATTAAAGTCTCGACTTGTCCGATT 695
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 576 CATGTGTTTCACCGAAAGTGTGTGGACTTGTGGTTGATTAAAGTCTCGACTTGTCCGATT 635
Query 696 TGTAGGGATAGGGTTTATAGATTTGA 721
||||||||||||||||||||||||||
Sbjct 636 TGTAGGGATAGGGTTTATAGATTTGA 661
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37703564913
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5