BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: halleri_transcript_ahg.fa
           32,672 sequences; 38,939,717 total letters



Query= AT4G30380.1

Length=372
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  Ahg328678 jgi|Araly1|328678|fgenesh1_pm.C_scaffold_7000905           490    3e-138


> Ahg328678 jgi|Araly1|328678|fgenesh1_pm.C_scaffold_7000905
Length=375

 Score =  490 bits (265),  Expect = 3e-138
 Identities = 344/380 (91%), Gaps = 13/380 (3%)
 Strand=Plus/Plus

Query  1    ATGAGT-AAAAGTATTGTGtttttttCTACCGTTCTTGTTTTTCTCTTCTCTTTCTCATA  59
            |||||| |||||| || || |||||||||||||||||||||||||||||||||| |||||
Sbjct  1    ATGAGTAAAAAGT-TTTTGGTTTTTTCTACCGTTCTTGTTTTTCTCTTCTCTTTATCATA  59

Query  60   TGCAACTCCCGGGATTGCAACTTTTTACACAAG-T-TAC-AC-TC--CATGTTACAGAGG  113
            |||||||||||| ||| ||||||| |||||||| | |||  | ||  |||||||||||||
Sbjct  60   TGCAACTCCCGGAATTACAACTTTCTACACAAGTTATACTCCATCGGCATGTTACAGAGG  119

Query  114  TACTCAAGAAGGAGTGATGATCGCTGCAGCGAGTGATAC-ATTATGGGACAATGGTCGAG  172
            ||| |   ||||||||||||| |||||||| |||||| | ||||||| ||||||||||||
Sbjct  120  TACGC---AAGGAGTGATGATAGCTGCAGCAAGTGAT-CGATTATGGAACAATGGTCGAG  175

Query  173  TTTGTGGCAAAATGTTCACCGTGAAATGCAGCGGACCTCGTAACGCCGTGCCTCACCCTT  232
            |||||||||||||| |||| |||||||||| |||||||||||||||||||||||| ||||
Sbjct  176  TTTGTGGCAAAATGATCACAGTGAAATGCACCGGACCTCGTAACGCCGTGCCTCATCCTT  235

Query  233  GCACGGGGAAATCCGTGAAGGTCAAGATCGTTGACCATTGTCCCAGTGGCTGTGCTTCTA  292
            |||| ||||||||| ||| |||||| || |||||||||||||||||| ||||||||||||
Sbjct  236  GCACTGGGAAATCCATGACGGTCAAAATTGTTGACCATTGTCCCAGTAGCTGTGCTTCTA  295

Query  293  CGCTCGATCTTTCTCGAGAAGCTTTTGCTCAGATCGCTAATCCTGTCGCTGGGATTATTA  352
            ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  296  CGCTCGATCTTTCCCGAGAAGCTTTTGCTCAGATCGCTAATCCTGTCGCTGGGATTATTA  355

Query  353  ACATTGATTATTTTCCGTAA  372
            ||||||||||| ||||||||
Sbjct  356  ACATTGATTATATTCCGTAA  375



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 13278144972


  Database: halleri_transcript_ahg.fa
    Posted date:  Sep 25, 2014  2:02 AM
  Number of letters in database: 38,939,717
  Number of sequences in database:  32,672



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5