BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G30390.1
Length=782
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491714 jgi|Araly1|491714|fgenesh2_kg.7__1147__AT4G30390.1 784 0.0
> Ahg491714 jgi|Araly1|491714|fgenesh2_kg.7__1147__AT4G30390.1
Length=626
Score = 784 bits (424), Expect = 0.0
Identities = 572/637 (90%), Gaps = 35/637 (5%)
Strand=Plus/Plus
Query 138 GATCGTGGAAAATTCAGATTCCATTGCGACG-AAAAGAAGGCGGCGGATTC-AAAGAACA 195
|||||||| ||||||||||||||| |||||| ||||||||||||||||||| ||||||||
Sbjct 18 GATCGTGGGAAATTCAGATTCCATAGCGACGAAAAAGAAGGCGGCGGATTCAAAAGAACA 77
Query 196 CCCAAATACAAATCGAAGACGGAGCCTTTTCAGCAATTTCGTTTTATTCAACCTCTGGAA 255
| | | ||||| ||||||||||| ||| |||||||||| | || || |
Sbjct 78 --C--ACA-AAATCAAAGACGGAGCC-TTTAAGCAATTTCG---T-TT-AA----T---- 118
Query 256 CACCAATCATCTCAAACTGATTGAATGAGAAGCCCTCCCCCGTCTCTGCTCTCCCTCACC 315
||||||||||||||||||||||||| |||||| |||||||||||||||||||||
Sbjct 119 ------TCATCTCAAACTGATTGAATGAGAAACCCTCCTCCGTCTCTGCTCTCCCTCACC 172
Query 316 GTCAACGCCGCCGTCTTAAACATCTCTCGCATCAACGATCTCTCCCATCTTCCTGATCAC 375
||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||
Sbjct 173 GTCAACGCCGCCGTCTTAAACCTCTCTCGCATCAACGATCTCTCCCATCTACCTGATCAC 232
Query 376 ATCGTCCTTGACCTCTTCGCGAGGACATTGGAAGCTGGGAAATTGAATGAGAGAGTTCTG 435
||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 233 ATCCTCCTTGACCTCTTCGCGAGGACATTGAAAGCTGGGAAATTGAATGAGAGAGTTCTG 292
Query 436 AGACTCTTTATGGCATCTGGAAACGAAGAAGTTCTTTCTGTTATCGACGCCCTCAAAATC 495
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 293 AGACTCTTTATGGCATCTGGAAACGAAGAAGTTCTTTCTGTTATCGACGCCCTCAAAATC 352
Query 496 AAAATCAACGTTTCCCCGATCCTTCCTACTCGATGTGATGAGAAGTTTAGATTGCACGGG 555
||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 353 AAAATCAACGTTTATCCGATCCTTCCTACTCGATGTGATGAGAAGTTTAGATTGAACGGG 412
Query 556 ACTAGACGATAGGCGAAAGGTGA-ATGATTA-CGCGATGAGCGAGTTTGAAAACTT-GGT 612
||||| || |||| |||||||| | ||||| ||||||||||||||||| ||| || |||
Sbjct 413 ACTAGGCGTTAGGTGAAAGGTGGTA-GATTATCGCGATGAGCGAGTTTGGAAA-TTCGGT 470
Query 613 CCTATGTGTTTAAAGGTCAGTTCCTGATTGCAGTATTCGGATCATTTAGGTAGAAAAAAC 672
|||||||||| |||||||||||| |||||||||| ||||||||||||||| ||||| |||
Sbjct 471 CCTATGTGTTAAAAGGTCAGTTCATGATTGCAGTTTTCGGATCATTTAGGCAGAAACAAC 530
Query 673 AA-TGTGAACAACTGCAGAGATACATTACCAGATTGAAGTCTGTATTTTTCTTCTCTTTG 731
|| | || ||||||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 531 AAATCTGGACAACTGCAGAGATACATTGCCTGATTGAAGTCTGTATTTTTCTTCTCTTTG 590
Query 732 TGTGTAAATATGAAACGAAGGCGGT-CAAATTATATA 767
||||||||||| ||| ||||| ||| |||||||||||
Sbjct 591 TGTGTAAATATTAAATGAAGG-GGTTCAAATTATATA 626
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28859048169
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5