BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G30390.1 Length=782 Score E Sequences producing significant alignments: (Bits) Value Ahg491714 jgi|Araly1|491714|fgenesh2_kg.7__1147__AT4G30390.1 784 0.0 > Ahg491714 jgi|Araly1|491714|fgenesh2_kg.7__1147__AT4G30390.1 Length=626 Score = 784 bits (424), Expect = 0.0 Identities = 572/637 (90%), Gaps = 35/637 (5%) Strand=Plus/Plus Query 138 GATCGTGGAAAATTCAGATTCCATTGCGACG-AAAAGAAGGCGGCGGATTC-AAAGAACA 195 |||||||| ||||||||||||||| |||||| ||||||||||||||||||| |||||||| Sbjct 18 GATCGTGGGAAATTCAGATTCCATAGCGACGAAAAAGAAGGCGGCGGATTCAAAAGAACA 77 Query 196 CCCAAATACAAATCGAAGACGGAGCCTTTTCAGCAATTTCGTTTTATTCAACCTCTGGAA 255 | | | ||||| ||||||||||| ||| |||||||||| | || || | Sbjct 78 --C--ACA-AAATCAAAGACGGAGCC-TTTAAGCAATTTCG---T-TT-AA----T---- 118 Query 256 CACCAATCATCTCAAACTGATTGAATGAGAAGCCCTCCCCCGTCTCTGCTCTCCCTCACC 315 ||||||||||||||||||||||||| |||||| ||||||||||||||||||||| Sbjct 119 ------TCATCTCAAACTGATTGAATGAGAAACCCTCCTCCGTCTCTGCTCTCCCTCACC 172 Query 316 GTCAACGCCGCCGTCTTAAACATCTCTCGCATCAACGATCTCTCCCATCTTCCTGATCAC 375 ||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||| Sbjct 173 GTCAACGCCGCCGTCTTAAACCTCTCTCGCATCAACGATCTCTCCCATCTACCTGATCAC 232 Query 376 ATCGTCCTTGACCTCTTCGCGAGGACATTGGAAGCTGGGAAATTGAATGAGAGAGTTCTG 435 ||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 233 ATCCTCCTTGACCTCTTCGCGAGGACATTGAAAGCTGGGAAATTGAATGAGAGAGTTCTG 292 Query 436 AGACTCTTTATGGCATCTGGAAACGAAGAAGTTCTTTCTGTTATCGACGCCCTCAAAATC 495 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 293 AGACTCTTTATGGCATCTGGAAACGAAGAAGTTCTTTCTGTTATCGACGCCCTCAAAATC 352 Query 496 AAAATCAACGTTTCCCCGATCCTTCCTACTCGATGTGATGAGAAGTTTAGATTGCACGGG 555 ||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 353 AAAATCAACGTTTATCCGATCCTTCCTACTCGATGTGATGAGAAGTTTAGATTGAACGGG 412 Query 556 ACTAGACGATAGGCGAAAGGTGA-ATGATTA-CGCGATGAGCGAGTTTGAAAACTT-GGT 612 ||||| || |||| |||||||| | ||||| ||||||||||||||||| ||| || ||| Sbjct 413 ACTAGGCGTTAGGTGAAAGGTGGTA-GATTATCGCGATGAGCGAGTTTGGAAA-TTCGGT 470 Query 613 CCTATGTGTTTAAAGGTCAGTTCCTGATTGCAGTATTCGGATCATTTAGGTAGAAAAAAC 672 |||||||||| |||||||||||| |||||||||| ||||||||||||||| ||||| ||| Sbjct 471 CCTATGTGTTAAAAGGTCAGTTCATGATTGCAGTTTTCGGATCATTTAGGCAGAAACAAC 530 Query 673 AA-TGTGAACAACTGCAGAGATACATTACCAGATTGAAGTCTGTATTTTTCTTCTCTTTG 731 || | || ||||||||||||||||||| || ||||||||||||||||||||||||||||| Sbjct 531 AAATCTGGACAACTGCAGAGATACATTGCCTGATTGAAGTCTGTATTTTTCTTCTCTTTG 590 Query 732 TGTGTAAATATGAAACGAAGGCGGT-CAAATTATATA 767 ||||||||||| ||| ||||| ||| ||||||||||| Sbjct 591 TGTGTAAATATTAAATGAAGG-GGTTCAAATTATATA 626 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 28859048169 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5