BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G30400.1
Length=1683
Score E
Sequences producing significant alignments: (Bits) Value
Ahg944951 jgi|Araly1|944951|scaffold_701180.1 2154 0.0
Ahg480768 jgi|Araly1|480768|fgenesh2_kg.3__3469__AT2G18650.1 161 1e-38
> Ahg944951 jgi|Araly1|944951|scaffold_701180.1
Length=1494
Score = 2154 bits (1166), Expect = 0.0
Identities = 1396/1500 (93%), Gaps = 43/1500 (3%)
Strand=Plus/Plus
Query 102 TTCCTTTTCTCTCTCAAACTCATGAAATTTTCTCGGGAAAATATGAAATGGGTTTTCCCA 161
|||||||||||||||| ||| ||||||||||||||||||||||||||||||||||| |||
Sbjct 1 TTCCTTTTCTCTCTCACACTTATGAAATTTTCTCGGGAAAATATGAAATGGGTTTTTCCA 60
Query 162 GAAATCAAAACAACTCAGAATTTCCTCTCTCCTTCATCACTT------------CCACAA 209
|||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 61 GAAATCAAAACAACTCAGAATTTCCTCTCTCCTTCATCACTTCCACGGCCACCACCACAA 120
Query 210 GAACCACCGTTATCTCTCCGCT-C--CAGCGCAAACTTCGATCTAAACAGCAAAATCAGT 266
|||||||||||||||||||| | | || |||||||||||||||||||||||||||||||
Sbjct 121 GAACCACCGTTATCTCTCCGATCCAACAACGCAAACTTCGATCTAAACAGCAAAATCAGT 180
Query 267 CCAAGTATTCTCCTCATAATCATAATCCTCTCAATCATCTTCTTCATCTCCGGTCTCCTT 326
|| |||||||| |||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 181 CCGAGTATTCTTCTCATAATCATAATCCTCTCAATCATCTTCTTCATCTCTGGTCTTCTT 240
Query 327 CATCTCTTAGTCAGATTCCTCCTCACACCATCGAGCAGAGACAGAGAAGATTACTTCGAC 386
|||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 241 CATCTCTTAGTCAGATTCCTTCTCACACCATCAAGCAGAGACAGAGAAGATTACTTCGAC 300
Query 387 AACGTCACTGCTCTTCAAGGCCAGCTTCAACAGCTTTTTCATCTCCATGATTCTGGAGTT 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 AACGTCACTGCTCTTCAAGGCCAGCTTCAACAGCTTTTTCATCTCCATGATTCTGGAGTT 360
Query 447 GACCAATCCTTCATCGACACGTTACCTGTTTTCCATTACAAATCCATAATCGGTCTCAAG 506
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 361 GACCAATCCTTCATCGACACGTTACCTGTTTTCCATTACAAGTCCATAATCGGTCTCAAG 420
Query 507 AACTATCCTTTTGATTGTGCAGTTTGTCTTTGTGAGTTCGAAACAGAGGATAAGCTCAGG 566
|||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 421 AACTATCCTTTTGATTGTGCTGTTTGTCTTTGTGAGTTCGAAACAGAGGACAAGCTCAGG 480
Query 567 CTCTTACCTAAATGCAGCCACGCCTTTCACATGGATTGTATCGATACTTGGCTTCTATCT 626
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 481 CTTTTACCTAAATGCAGCCACGCCTTTCACATGGATTGTATCGATACTTGGCTTCTCTCT 540
Query 627 CACTCTACTTGTCCTTTGTGTAGATCCAGTCTCCTCTCTGATCTCTCTTCGCACCAAGAT 686
||||| |||||||||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 541 CACTCAACTTGTCCTTTGTGTAGATCTAGTCTCCTCTCTGATCTCTCTTCTCACCAAGAT 600
Query 687 CCTCGTTCTTCTTTCCTCCTTGTGCTCGAGTCTGCGAGTGATCATAGCTCGAGAGAGATT 746
||||||||||||||||||||||| || ||||||||||||||||||||||| |||||||||
Sbjct 601 CCTCGTTCTTCTTTCCTCCTTGTTCTTGAGTCTGCGAGTGATCATAGCTCCAGAGAGATT 660
Query 747 GGAGGAGATAGAGACAGTGCAGCTTGTGTGGCTGCAAATGATGATATTGATGTGTCT-A- 804
||||||||||||||||||||||||||||||||||| |||||||||| |||||||||| |
Sbjct 661 GGAGGAGATAGAGACAGTGCAGCTTGTGTGGCTGCCAATGATGATAATGATGTGTCTAAT 720
Query 805 G----------------TGCTCATCTTGGTTTGGTCGGAAACAATGATCTTGGATCA-AC 847
| | ||||||||||||| |||||||||||||||||||||||| ||
Sbjct 721 GTTCATTCACATTCCAATTCTCATCTTGGTTTTGTCGGAAACAATGATCTTGGATCACAC 780
Query 848 CAGGATAGATTCGGGTCACGGAGATCAGTA-CCTGGATGGTGAATTGGGTGGTTCGGTTG 906
| || ||||||||||||| |||||||| || ||| |||||||||||||||||||||||||
Sbjct 781 C-GGTTAGATTCGGGTCATGGAGATCAATACCCT-GATGGTGAATTGGGTGGTTCGGTTG 838
Query 907 GAAAGGTTGTTCCTTTTTCAGTTAAGCTAGGGAAGTTTAGGAATATAGATATTGGTGAAG 966
||||||||||||||||| |||||||||| ||||| |||||||||||||||||||||||||
Sbjct 839 GAAAGGTTGTTCCTTTTGCAGTTAAGCTTGGGAAATTTAGGAATATAGATATTGGTGAAG 898
Query 967 GAACTAGTAGCAACAACAACATTGGTAATAGTAGTAGTTTAGATGAGAGGAGGTGTTTCT 1026
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 899 GAACTAGTAGCAACAACAACATTGGTAATAGTAGTAGTTTAGATGAAAGGAGGTGTTTTT 958
Query 1027 CAATGGGATCATATGAGTATATAATGGATGAAGAAACGACTCTTAAGGTTCATGTTTCAA 1086
|||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||
Sbjct 959 CAATGGGATCATATGAGTATATAATGGATGAAGAAACGGCTCTTAAAGTTCATGTTTCAA 1018
Query 1087 CCAAGAAACAATCAAGCAAGAACCGTGGCTTGCCCGGTCATAGGACAGCGATGTCCGAAT 1146
| |||||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 1019 CTAAGAAACAATCAAGCAAGAACCGTGGCTTGCCCGGTCATAGGACCGCCATGTCCGAAT 1078
Query 1147 GCGGGTTTGATCCAACAGGGAGATTGAAATTCAGTGGGAGTGGATCGATGAGGATAGTGG 1206
||||||||||||||||||||||||||||||||| |||||| |||||||||||||| | ||
Sbjct 1079 GCGGGTTTGATCCAACAGGGAGATTGAAATTCAATGGGAGCGGATCGATGAGGATCGCGG 1138
Query 1207 AAGAAGCGGCCGAGAAGAATGTAGTGGAAAGAGAGAGCTTTTCGGTATCGAAAATATGGC 1266
|||||||| |||||||||||||||| ||||||||||||||||||||||| ||||| ||||
Sbjct 1139 AAGAAGCGACCGAGAAGAATGTAGTAGAAAGAGAGAGCTTTTCGGTATCTAAAATTTGGC 1198
Query 1267 TAAGGGGGAAGAAGGAGAAGCATAGTAAAGTTCAAGGAAAAGAGGATAGTTCATTGGTTT 1326
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1199 TAAGAGGGAAGAAGGAGAAGCATAGTAAAGTTCAAGGAAAAGAGGATAGTTCATTGGTTT 1258
Query 1327 CTTCGTCTTCGGGAAGAGCATTCTCTTTCAGGTTATCGAACCAGCGGAA-CCATCCCGAT 1385
| || ||||||||||||||||||||||||||||||||||||||||| || || |||||||
Sbjct 1259 CGTCTTCTTCGGGAAGAGCATTCTCTTTCAGGTTATCGAACCAGCGTAATCC-TCCCGAT 1317
Query 1386 GCGATGA-TCGAAAGTGGTTGCGAAGAAGATAATCAAAAGTGCGAAAACTCGGAGTCTTT 1444
||| || | || ||||||||||||||||| |||||||||||||||||||| || || ||
Sbjct 1318 ACGAAGAAT-GAGAGTGGTTGCGAAGAAGAGAATCAAAAGTGCGAAAACTCAGAATCGTT 1376
Query 1445 GGAGACTAAAACACCATCTTTTGCTAGGAGGACTATGCTTTGGCTTGCAGGGAGACAAAA 1504
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1377 GGAGACTAAAACACCATCTTTTGCTAGGAGGACTATGCTTTGGCTTGCTGGGAGACAAAA 1436
Query 1505 CAAGGTTGTTCATTCTTCTTCTTCAACTAATGTCTAGTTACTATAATTTTTCCATTTTCA 1564
||||||||||||||||||||||||||||||||||||||| || || ||||||| ||||||
Sbjct 1437 CAAGGTTGTTCATTCTTCTTCTTCAACTAATGTCTAGTTTCTCTA-TTTTTCC-TTTTCA 1494
> Ahg480768 jgi|Araly1|480768|fgenesh2_kg.3__3469__AT2G18650.1
Length=1242
Score = 161 bits (87), Expect = 1e-38
Identities = 105/114 (92%), Gaps = 0/114 (0%)
Strand=Plus/Plus
Query 1410 GAAGATAATCAAAAGTGCGAAAACTCGGAGTCTTTGGAGACTAAAACACCATCTTTTGCT 1469
||||| | ||||||| ||||||| ||||||||||||||||| ||||| ||||||||||||
Sbjct 1114 GAAGAGAGTCAAAAGAGCGAAAATTCGGAGTCTTTGGAGACGAAAACGCCATCTTTTGCT 1173
Query 1470 AGGAGGACTATGCTTTGGCTTGCAGGGAGACAAAACAAGGTTGTTCATTCTTCT 1523
|||||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1174 AGGAGGACCATGCTTTGGCTTGCAGGGAGACAAAACAAGGTTGTTCAGCCTTCT 1227
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63115535965
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5