BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G30410.2
Length=1068
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491711 jgi|Araly1|491711|fgenesh2_kg.7__1144__AT4G30410.2 1519 0.0
> Ahg491711 jgi|Araly1|491711|fgenesh2_kg.7__1144__AT4G30410.2
Length=1050
Score = 1519 bits (822), Expect = 0.0
Identities = 1002/1081 (93%), Gaps = 44/1081 (4%)
Strand=Plus/Plus
Query 1 CCCTTACCTCTCTGTCTCTTTCCCTCTCTCTCGTCGAATTCACGAATTCGTGAGGTGACC 60
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 1 CCCTTACCTCTCTGTCTCTTTCCCTCTCTCTCGTTGAATTCACGAATTCGTGAGGTGACC 60
Query 61 GCAGATTTGTTCTTAGCAATCTTTGACGACACTAGAAGTAAACAAATT-CTTAAAAAGGT 119
|||||||||||||||||||||| ||||||||||||||| ||| || || |||||||||||
Sbjct 61 GCAGATTTGTTCTTAGCAATCTCTGACGACACTAGAAGGAAA-AATTTCCTTAAAAAGGT 119
Query 120 ATGTGTTCATGTCTCTTCTGGTTATAATAAGGAACCCTAAACGGGGAAAA-AATCCAGTT 178
||||||||||||||||| ||||||| |||||||||||||||| |||||| || ||||||
Sbjct 120 ATGTGTTCATGTCTCTTTTGGTTATGATAAGGAACCCTAAAC--GGAAAATAA-CCAGTT 176
Query 179 TGGTTATGATTTGATGTATATTAGTATATTACATACATGTATCCCTTTGATGTATAAAGA 238
||||||||| || || | | ||||| | ||||||||||||||||||||||||||
Sbjct 177 TGGTTATGA-TT--TG---A-T-GTATA-T---TACATGTATCCCTTTGATGTATAAAGG 224
Query 239 CATCATGGTTTATTACTTAGGATTAACTTACTTTTTCTTGAA-A-AATGACTCATAATTG 296
|||||||| | ||||||||||||||||||||| | ||||| |||||||||
Sbjct 225 CATCATGG---------T---ATTAACTTACTTTTTCTTGAAGAGAATGATTCATAATTG 272
Query 297 AGTATATTTCTACTTGATTAGGA-T--TTAGGATGCAGCCTACGAGCTCAATGAATGAAG 353
||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct 273 AGTATATTTCTACTTGATTAGGATTAATTAGGATGCAGCCTACGAGCTCAATGAATGAAG 332
Query 354 AATTCCTAAAGAAATGGCAAATGGGTCTTCAAATATTCCGTCCTTCGATAGACAACACGA 413
||||||||||||||||||||||||||||||| ||||| | ||||||||||||||||||||
Sbjct 333 AATTCCTAAAGAAATGGCAAATGGGTCTTCAGATATTTCATCCTTCGATAGACAACACGA 392
Query 414 GCGTCCACGAGAGaaaaaaaGCAATAAAGCTCTCTGCAGACGTTGCAATGGCGTCTCTAA 473
| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 393 GTGTCCACGAGAGAAAGAAAGCAATAAAGCTCTCTGCAGACGTTGCAATGGCGTCTCTAA 452
Query 474 GAAAAGGAACAACTTGTTGGAGCCGAGCCCTAATCGAGAAAACCGCCACCGAGGACAATT 533
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 453 GAAAAGGAACAACTTGTTGGAGCCGAGCCCTAATCGAGAAAACCGCCACCGAGGACAATT 512
Query 534 TCCTCGTACGTCAGATGCTTTCCGGCATCAAAGCGGAAACGTTAATCAACAAGAAGTTGC 593
|||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 513 TCCTCGTACGTCAGATGCTTTCCGGCATCAAAGCGGAAGCGCTAATCAACAAGAAGTTGC 572
Query 594 CTAAGAAGACTGTGTGTCATAGGAAGATCGTGAGGCGAAGCAAGAAGATCTTGAGGAGGA 653
|||||| |||||||||||| || |||||||||||||||||||||||||||||||||||||
Sbjct 573 CTAAGAGGACTGTGTGTCACAGAAAGATCGTGAGGCGAAGCAAGAAGATCTTGAGGAGGA 632
Query 654 AATCGAAATCAGCGAGCGAAGAGGCTGCAGCAAAAGCTAAGAGACTCGTCAAGAGACGGA 713
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 633 AATCGAAATCAGCGAGCGAAGAGGCGGCAGCAAAAGCTAAGAGACTCGTCAAGAGACGGA 692
Query 714 CTCAAGGATTAAGAAACGTTGTACCTGGTGGTGAGTTGATGAGCAATGACGTCTTGTTGC 773
|||||||||||||||||||||| || |||||||| |||||||||||||||||||||||||
Sbjct 693 CTCAAGGATTAAGAAACGTTGTCCCCGGTGGTGAATTGATGAGCAATGACGTCTTGTTGC 752
Query 774 TTCAAGAAACGTTAGATTACATTGTGTCGCTTCAAACGCAAGTAAATGTTATGAGAAGTA 833
| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 753 TACAAGAAACCTTAGATTACATTGTGTCGCTTCAAACGCAAGTAAATGTTATGAGAAGTA 812
Query 834 TTGTTGATGCTGCCGAGGCCGAAATTGAGAGATAAATGATaaaaaaaaa-TCTTGTTTTA 892
||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 813 TTGTTGATGCTGCCGAGGCCGAAATTGAGAGGTAAATGATAAAAAAAAAATCTTGTTTTG 872
Query 893 tttttttATCTG----CGGAGATTAGTTGCGAAAGCATGATGTCGATCGGATCTTGTTGT 948
||||||| | || ||||||||| ||||||||||||||| | |||||||||| |||||
Sbjct 873 TTTTTTTTTTTGTTTGCGGAGATTAATTGCGAAAGCATGATCTTGATCGGATCTCGTTGT 932
Query 949 TGGTCATTAGAACCGTATGTTATTCGGACAATGCAATTGTCATACGAGGATGGAGAGATA 1008
|| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 933 TGTTCATTAGAACCGTATGTTATTTGGACAATGCAATTGTCATACGAGGATGGAGAGAT- 991
Query 1009 TTATAGTAAGCCATTTTGTACATAAGGAAATTTAT-ACAATGCTTATAGAAAGTTTCTGC 1067
| ||||||||||||||||||||||||||| ||| | ||||||||||||||||||||||||
Sbjct 992 T-ATAGTAAGCCATTTTGTACATAAGGAATTTT-TCACAATGCTTATAGAAAGTTTCTGC 1049
Query 1068 T 1068
|
Sbjct 1050 T 1050
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39762202431
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5