BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G30420.1
Length=1122
Score E
Sequences producing significant alignments: (Bits) Value
Ahg889075 jgi|Araly1|889075|Al_scaffold_0007_1061 1805 0.0
> Ahg889075 jgi|Araly1|889075|Al_scaffold_0007_1061
Length=1116
Score = 1805 bits (977), Expect = 0.0
Identities = 1072/1118 (96%), Gaps = 5/1118 (0%)
Strand=Plus/Plus
Query 1 ATGGCGATGACGATGATTCAACTATGTTATGCAGGAGTGACTCTCTTTGCAAGAGCTACT 60
||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 1 ATGGCGATGACGATGATTCAACTGTGTTATGCTGGAGTGACTCTCTTTGCAAGAGCTACT 60
Query 61 TTGGTTCATGGATTAAGCCCTCGGGTTTTTATCCTCTATAGGCAAGCCTTTGCCACCATT 120
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 61 TTGGTTCATGGATTAAGCCCTCGGGTTTTTATCCTCTATAGGCAAGCCTTTGCAACCATT 120
Query 121 TTCATCTTCCCATTTCTTTACTTATCCAGGAGAAAATCAAAGATAGCTATATCTTCTTTG 180
||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 121 TTCATCTTCCCATTTCTCTACTTATCCAGGAGAAAATCAAAGATAGCCATATCTTCTTTG 180
Query 181 GATCTAAAGAGCTTTTCTTTAATATTCTTGGTCTCGCTTATAGGCATTACAATCAATCAA 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 GATCTAAAGAGCTTTTCTTTAATATTCTTGGTCTCGCTTATAGGCATTACAATCAATCAA 240
Query 241 AATCTATATCTTGAAGGTCTTTACTTAACTTCATCATCAATGGGAAGTGCAGTGGGTAAC 300
||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||
Sbjct 241 AATCTATATCTTGAAGGCCTTTACTTAACTTCATCATCGATGGGAAGTGCAGTGGGTAAC 300
Query 301 ATCATCCCTGCAATCACCTTCCTCATCTCATTTCTCGCCGGATACGAGAAACTGAATCTC 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 301 ATCATCCCTGCAATCACCTTCCTCATCTCATTTCTCGCCGGATACGAGAAACTGAATATC 360
Query 361 CGAGATATAAGAGGCTTAGCAAAGATCGCAGGGACGATCCTATGTGTAGCAGGAGCGATC 420
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 361 CGAGATATAAGAGGCTTAGCAAAGATCGCAGGGACGATCCTCTGTGTAGCAGGAGCGATC 420
Query 421 TCCATGACTCTTCTTCGTGGACCAAAGATTCTCAACTCAGAATCCGCTTTACCGATCGCT 480
||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| |
Sbjct 421 TCCATGACTCTGCTTCGTGGACCAAAGATTCTCAACTCAGAATCCGCTTTACCAATCGAT 480
Query 481 AAATCGGTATTAGGACATCTTAAAGACCAGAACACGTGGTTGATTGGCTGTTTGTTCTTG 540
||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 481 AAATCGGTATTAGGAAATCTTAAAGACCAGAACACGTGGTTGATTGGTTGTTTGTTCTTG 540
Query 541 TTTTCTAGCACTCTTTGTTGGTCCTTTTGGCTTATACTTCAGGTTCCAATCTCTGCCTAC 600
|| ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 TTCTCTAGTACTCTTTGCTGGTCCTTTTGGCTTATACTTCAGGTTCCAATCTCTGCCTAC 600
Query 601 TATCCAGATAACCTCTCTTTATCAGCATGGATGTGTTTATTCGGAACAATACAATGTGCA 660
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 601 TATCCAGATAACCTCTCTTTATCAGCATGGATGTGTTTATTCGGAACGATACAATGTGCA 660
Query 661 GTCGTCACTTTCTTCCTTGAGAAAGACCCAAACGCTTGGATTCTCCATTCCTACTCCGAG 720
||||||||||||||||| ||||| || |||||||||||||||||||||||||||||||||
Sbjct 661 GTCGTCACTTTCTTCCTAGAGAAGGATCCAAACGCTTGGATTCTCCATTCCTACTCCGAG 720
Query 721 TTTGCCACATGTCTCTATGCAGGAATTGGGGCGTCAGCACTTTCTTTTACGGTCCAAGCT 780
||||| ||||||||||| ||||||||||||||||| |||||||| ||||| |||||||||
Sbjct 721 TTTGCGACATGTCTCTACGCAGGAATTGGGGCGTCGGCACTTTCGTTTACAGTCCAAGCT 780
Query 781 TGGGCTATTGCAAAGAGAGGTCCTGTGTTTTCTGCACTGTTTAATCCTCTTTGTACAGTC 840
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 TGGGCTATTGCAAAGAGAGGTCCTGTGTTTTCTGCACTGTTTAATCCTCTTTGTACAGTC 840
Query 841 ATTGTCACAATCTTGGCTGCTTTGTTCTTCCATGAAGAGATTTACACTGGAAGTTTAATC 900
||||| ||||||||||||||| |||||||||| |||||||||||||||||||||||| ||
Sbjct 841 ATTGTAACAATCTTGGCTGCTCTGTTCTTCCAAGAAGAGATTTACACTGGAAGTTTACTC 900
Query 901 GGAGGATT-GGGCGTGATATTGGGACTTTACACTGTGCTCTGGGGTAAAGCAAAAGATGT 959
|||||||| ||| |||||| ||||||||||||||||||| ||||||||||||||||||||
Sbjct 901 GGAGGATTAGGG-GTGATAATGGGACTTTACACTGTGCTATGGGGTAAAGCAAAAGATGT 959
Query 960 CATGATGAATCAAGATCAGAGAGACAATGATCAGAAGTCAGAAGTGAAGATTCATATAGA 1019
||||| ||||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 960 TATGATTAATCAAGATCAGAGAGACAATGATCAGAACTCAGAAGTAAAGATTCATATAGA 1019
Query 1020 AGATTCTTCAAACACAACAATCTGTAATAAAGATCTGAAGAATCCTCTGT-TGTCCAAAC 1078
||||||||||||||||| |||||||| | |||||||||||||||||| | ||||||| |
Sbjct 1020 AGATTCTTCAAACACAATTATCTGTAACAGAGATCTGAAGAATCCTCT-TCTGTCCAA-C 1077
Query 1079 ACAAATCAACAGAAGAAATCCAAACACATCAACAACTA 1116
||||||||||||||||||||||||||||||| ||||||
Sbjct 1078 ACAAATCAACAGAAGAAATCCAAACACATCACCAACTA 1115
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41820839949
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5