BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G30430.1
Length=1124
Score E
Sequences producing significant alignments: (Bits) Value
Ahg328673 jgi|Araly1|328673|fgenesh1_pm.C_scaffold_7000900 1147 0.0
Ahg889075 jgi|Araly1|889075|Al_scaffold_0007_1061 176 3e-43
> Ahg328673 jgi|Araly1|328673|fgenesh1_pm.C_scaffold_7000900
Length=819
Score = 1147 bits (621), Expect = 0.0
Identities = 757/823 (92%), Gaps = 8/823 (1%)
Strand=Plus/Plus
Query 60 ATGGTACGTTTTAGTAACAGTCTTGTAGGAATACTCAACTTCTTCGTCTTCCTTCTCTCG 119
|||||||||||||||||||| ||| |||||||||||||||||||||||||||| ||||||
Sbjct 1 ATGGTACGTTTTAGTAACAGCCTTATAGGAATACTCAACTTCTTCGTCTTCCTCCTCTCG 60
Query 120 GTTCCCATACTCTCAACCGGAATCTGGCTCAGCCTTAAAGCCACGACGCAATGCGAGAGA 179
||||| || |||||||| ||||||||||| |||||||| ||| |||||||||||||| ||
Sbjct 61 GTTCCGATTCTCTCAACAGGAATCTGGCTTAGCCTTAACGCCTCGACGCAATGCGAGCGA 120
Query 180 TTCCTCGACAAACCCATGATCGCTCTCGGTGTTTTCCTCATGATAATCGCAATCGCTGGA 239
|| |||||||||||||| ||||||||||||| ||||||||||||| ||||||||||||||
Sbjct 121 TTTCTCGACAAACCCATAATCGCTCTCGGTGCTTTCCTCATGATAGTCGCAATCGCTGGA 180
Query 240 GTCGTTGGATCTTGTTGCAGAGTGACGTGGCTTCTCTGGTCCTATCTCTTTGTGATGTTC 299
|||||||||||||||||||||||||||||||||||||||| |||||| ||||| ||||||
Sbjct 181 GTCGTTGGATCTTGTTGCAGAGTGACGTGGCTTCTCTGGTTCTATCTATTTGTTATGTTC 240
Query 300 TTCTTAATCCTCATCGTCCTCTGTTTCACCATCTTTGCCTTCGTTGTCACTAGTAAAGGC 359
| ||||||| |||| |||||||||||||||||||| ||||| || |||||||||||||||
Sbjct 241 TCCTTAATCGTCATAGTCCTCTGTTTCACCATCTTCGCCTTTGTGGTCACTAGTAAAGGC 300
Query 360 TCCGGCGAAACTATCCAAGGAAAAGCTTATAAGGAGTATAGGCTCGAGGCTTACTCTGAT 419
||||| |||||||||| ||||| |||||||||||||||||||| ||| |||||||||||
Sbjct 301 TCCGGTGAAACTATCCCTGGAAAGGCTTATAAGGAGTATAGGCTTGAGACTTACTCTGAT 360
Query 420 TGGTTGCAGAGGCGTGTGAACAACGCTAAGCATTGGAACAGCATTAGAAGCTGTCTTTAT 479
|||||||||| |||||||||||||||||| |||||||||| |||||||||||||||||||
Sbjct 361 TGGTTGCAGAAGCGTGTGAACAACGCTAAACATTGGAACAACATTAGAAGCTGTCTTTAT 420
Query 480 GAGAGCAAGTTCTGTTATAACTTGGAGTTAGT-CACTGCTAATCA-CACTGTTTCTGATT 537
|||||||||||||||| ||||||||||||| | | ||||| | | | ||||||||| ||
Sbjct 421 GAGAGCAAGTTCTGTTCTAACTTGGAGTTA-TACGCTGCTCGTGAGC-CTGTTTCTGCTT 478
Query 538 TCTACAAAGAAGATCTCACTGCTTTTGAGTCTGGTTGCTGCAAGCCCTCTAATGACTGTG 597
|||||||||| ||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 479 TCTACAAAGAGGATCTCACTCCTCTTGAGTCTGGTTGCTGCAAGCCCTCTAATGACTGTA 538
Query 598 ACTTCACCTACATAACTTCAACAACTTGGAATAAAACATCAGGAACACATAAA-AACTCA 656
|||||| |||||||| | |||||| |||||| ||||||||||||||||| ||| ||||||
Sbjct 539 ACTTCATCTACATAAATGCAACAAGTTGGAACAAAACATCAGGAACACA-AAAGAACTCA 597
Query 657 GATTGCCAACTTTGGGACAACGAAAAGCATAAGCTTTGCTACAATTGCAAAGCCTGCAAG 716
||||||||||||||||||||||||||| |||||||||||||||||||| |||| ||||||
Sbjct 598 GATTGCCAACTTTGGGACAACGAAAAGGATAAGCTTTGCTACAATTGCCAAGCATGCAAG 657
Query 717 GCCGGTTTTCTCGACAACCTCAAG-GCCGCATGGAAAAGAGTTGCTATTGTCAACATCAT 775
|| ||||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 658 GCTGGTTTTCTCGACAACCTCAAGAGCT-CATGGAAAAGAGTTGCTATTGTCAACATCAT 716
Query 776 TTTCCTTGTACTCCTCGTTGTCGTCTACGCTATGGGATGTTGCGCTTTCCGAAACAACAA 835
|||||||||||||||| || ||||||||||||||||||||||||| ||||||||||||||
Sbjct 717 TTTCCTTGTACTCCTCATTATCGTCTACGCTATGGGATGTTGCGCCTTCCGAAACAACAA 776
Query 836 AGAAGATAGATATGGCCGTTCCAATGGTTTCAACAATTCTTGA 878
||||||||| |||| |||||||||||||||||||||| |||||
Sbjct 777 AGAAGATAGTTATGCCCGTTCCAATGGTTTCAACAATCCTTGA 819
> Ahg889075 jgi|Araly1|889075|Al_scaffold_0007_1061
Length=1116
Score = 176 bits (95), Expect = 3e-43
Identities = 117/127 (92%), Gaps = 3/127 (2%)
Strand=Plus/Minus
Query 999 TAGTTGTTGATGTGTTTGGATTTCTTCTGTTGATTTGTGTTTGGACA-ACAGAGGATTCT 1057
|||||| |||||||||||||||||||||||||||||||||| ||||| | ||||||||||
Sbjct 1115 TAGTTGGTGATGTGTTTGGATTTCTTCTGTTGATTTGTGTT-GGACAGA-AGAGGATTCT 1058
Query 1058 TCAGATCTTTATTACAGATTGTTGTGTTTGAAGAATCTTCTATATGAATCTTCACTTCTG 1117
|||||||| | |||||||| ||||||||||||||||||||||||||||||| |||||||
Sbjct 1057 TCAGATCTCTGTTACAGATAATTGTGTTTGAAGAATCTTCTATATGAATCTTTACTTCTG 998
Query 1118 ACTTCTG 1124
| |||||
Sbjct 997 AGTTCTG 991
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41897085783
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5