BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G30440.1
Length=1626
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491708 jgi|Araly1|491708|fgenesh2_kg.7__1141__AT4G30440.1 2619 0.0
Ahg935483 jgi|Araly1|935483|scaffold_403471.1 399 2e-110
> Ahg491708 jgi|Araly1|491708|fgenesh2_kg.7__1141__AT4G30440.1
Length=1619
Score = 2619 bits (1418), Expect = 0.0
Identities = 1566/1634 (96%), Gaps = 23/1634 (1%)
Strand=Plus/Plus
Query 1 GTCTCCTTGTCCCCTAACCCCACCTGTATATATACTTCTCCGTCTCTTCCTCTTCTCCTT 60
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1 GTCTCCTTGTCCCCTAACCTCACCTGTATATATACTTCTCCGTCTCTTCCTCTTCTCCTT 60
Query 61 AGCAGATGC-TTTTGG-Gaaaaaa-a-aTATATACCAAAATAAAAGATCTGCATCTGtct 116
||||||||| |||||| |||||| | ||||||||||||| |||| ||||||||||||||
Sbjct 61 AGCAGATGCTTTTTGGAAAAAAAATATATATATACCAAAA-AAAAAATCTGCATCTGTCT 119
Query 117 tcttcttcttcttcATTTCCTCTAAATTTAATTACCCATTTTTTCCGATAAATTTTTGTT 176
||||| ||||||| ||||||||||||||||||||||||| ||||||||||||||||
Sbjct 120 TCTTC--CTTCTTC----CCTCTAAATTTAATTACCCATTTTTCCCGATAAATTTTTGTT 173
Query 177 GAGGAAGAATTTTTGTTGTAAAGAGAGTTTAATTAAATTATGCCTTCAATAGAAGATGAG 236
||||||||| |||| ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 174 GAGGAAGAAATTTT-TTGTAAAGAGAGTTTAA-TAAATTATGCCTTCAATAGAAGATGAG 231
Query 237 CTGTTTCCGTCAACGCCGGGTAAATTCAAAATTGACCGGTCAAACCGTCAGCTCCACCGT 296
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 232 CTGTTTCCGTCAACGCCGGGTAAATTCAAAATTGACCGGTCAAACCGTCAGCTCCACCGT 291
Query 297 TGTTTCGCTTCTACGAGCACCATGTTTCTTTGGGCTCTCTTCCTCATCGCTCTCACCGCT 356
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 292 TGTTTCGCTTCTACGAGCACCATGTTCCTTTGGGCTCTCTTCCTCATCGCTCTCACCGCT 351
Query 357 TCTTACTTGAGTTTCCAAAGCTTCGTCGATTCCGGTAGCCGTTATCTAACCGCTTCTTGG 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 352 TCTTACTTGAGTTTCCAAAGCTTCGTCGATTCCGGTAGCCGTTATCTAACCGCTTCTTGG 411
Query 417 GGCGGCATCCAGTGGGAGAAACAGGTTCGTACCTCCGCTCAGATCCATCGCTCCGGCGGT 476
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 412 GGCGGAATCCAGTGGGAGAAACAGGTTCGTACCTCCGCTCAGATCCATCGCTCCGGCGGT 471
Query 477 ATCTCCGTCCTTGTTACCGGCGCTACCGGATTCGTCGGTAGCCACGTGTCACTTGCCTTG 536
|||||||| || ||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 472 ATCTCCGTTCTCGTTACCGGCGCTACCGGATTCGTCGGTAGCCACGTGTCACTCGCGTTG 531
Query 537 AGGAAACGCGGCGATGGTGTTGTTGGACTTGATAATTTCAACAATTACTACGATCCGTCG 596
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 532 AGGAAACGCGGCGATGGTGTCGTTGGACTTGATAATTTCAACAATTACTACGATCCGTCT 591
Query 597 TTGAAACGTGCTCGTAGATCTCTGTTGTCGTCGAGAGGGATCTTCGTCGTTGAAGGAGAT 656
|||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 592 TTGAAACGTGCTCGCAGATCTATGTTGTCGTCGAGAGGGATCTTCGTCGTTGAAGGAGAT 651
Query 657 CTAAACGACGCGAAGCTGTTAGCAAAGCTTTTCGATGTGGTTGCTTTCACTCACGTGATG 716
|| |||||||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 652 CTCAACGACGCGAAGCTGTTAGCGAAGCTTTTCGATGTCGTTGCTTTCACTCACGTGATG 711
Query 717 CATCTCGCTGCTCAAGCTGGTGTTAGATACGCTTTGGAGAATCCTCAATCGTATGTTCAT 776
||||||||||||||||| || ||| ||||||||||||||||||||||||||||||||||
Sbjct 712 CATCTCGCTGCTCAAGCCGGAGTTCGATACGCTTTGGAGAATCCTCAATCGTATGTTCAC 771
Query 777 AGCAACATCGCCGGACTTGTGAATCTTCTCGAGATTTGCAAAGCGGCGAATCCTCAGCCG 836
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 772 AGCAACATCGCCGGACTTGTGAATCTTCTCGAGATTTGCAAAGCGGCGAATCCTCAGCCG 831
Query 837 GCGATAGTTTGGGCTTCATCGAGCTCCGTTTATGGACTCAACGAGAAAGTTCCATTCTCT 896
||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 832 GCGATTGTTTGGGCTTCATCGAGCTCCGTCTATGGACTCAACGAGAAAGTTCCATTCTCC 891
Query 897 GAATCTGACCGGACGGATCAACCGGCGAGTCTCTACGCCGCAACGAAAAAAGCCGGCGAA 956
||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 892 GAATCTGACCGTACAGATCAACCGGCGAGTCTCTACGCCGCAACGAAAAAAGCCGGCGAA 951
Query 957 GAAATCACCCACACTTATAACCATATTTACGGTCTTGCCATTACCGGTTTAAGATTCTTC 1016
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 952 GAAATCACCCACACTTATAACCATATTTACGGTCTTGCCATTACCGGTTTAAGATTCTTC 1011
Query 1017 ACGGTTTACGGACCATGGGGTAGACCGGATATGGCTTACTTCTCCTTCACCAGAAACATC 1076
||||||||||| ||||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 1012 ACGGTTTACGGTCCATGGGGTAGACCGGACATGGCTTATTTCTCCTTCACCAGAAACATC 1071
Query 1077 CTACAAGGTAAACCGATCACAATCTACCGGGGCAAAAACCGGGTCGATTTAGCCCGGGAT 1136
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1072 CTACAAGGTAAACCGATCACAATCTACCGGGGCAAAAACCGGGTCGATTTAGCCCGGGAT 1131
Query 1137 TTCACATACATCGACGATATAGTGAAAGGATGTTTAGGATCTCTGGATTCATCGGGTAAA 1196
|| |||||||||||||||||||| ||||| || ||||||||||| |||||||||||||||
Sbjct 1132 TTTACATACATCGACGATATAGTCAAAGGCTGCTTAGGATCTCTAGATTCATCGGGTAAA 1191
Query 1197 AGTACCGGGTCGGGTGGTAAAAAACGTGGAGCAGCACCGTACCGGATATTTAACCTGGGA 1256
|||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 1192 AGTACCGGGTCGGGTGGTAAGAAACGTGGAGCCGCACCGTACCGGATATTTAACCTGGGA 1251
Query 1257 AACACATCTCCGGTTACAGTACCGATTCTGGTGGATATATTGGAGAAGCATTTAAAGGTG 1316
|||||||||||||| || ||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1252 AACACATCTCCGGTAACGGTACCGATTCTGGTGGATATATTGGAGAAGCATCTAAAGGTG 1311
Query 1317 AAAGCGAAGA-GGAACTTCGTGGAGATGCCAGGAAACGGCGACGTACCGTTCACACATGC 1375
||||| || | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1312 AAAGCAAA-ACGGAACTTCGTGGAGATGCCAGGAAACGGCGACGTACCGTTCACACATGC 1370
Query 1376 CAATATTAGCTCAGCCCGAAATGAATTCGGGTATAAACCGACAACCGATTTGGAAACCGG 1435
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1371 TAATATTAGCTCAGCACGAAATGAATTCGGGTATAAACCGACAACCGATTTGGAAACCGG 1430
Query 1436 GTTGAAGAAGTTCGTTAGATGGTATCTTTCTTATTACGGATACAATACTAAAGCCAAGCT 1495
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1431 GTTGAAGAAGTTCGTTAGATGGTATCTTTCTTATTACGGATACAATACTAAAGCCAAGCT 1490
Query 1496 TGTACATTAACCGTGACTATTATTAT--T-ATTTTTAATGAAATTAtttttttCTTTCTC 1552
|||||||||||| ||||||||||||| | ||||||||||||||||||||||||||||||
Sbjct 1491 TGTACATTAACCATGACTATTATTATAATTATTTTTAATGAAATTATTTTTTTCTTTCTC 1550
Query 1553 CCATACATTTTATATGATTCGTTTCTTTTAGGATTATTATAAAATCTAAATGATTCGTTT 1612
||||||||||||||||||||||| |||| |||||||| | ||| ||||||| ||||||||
Sbjct 1551 CCATACATTTTATATGATTCGTT-CTTT-AGGATTAT-A-AAA-TCTAAATTATTCGTTT 1605
Query 1613 CTCTTAAGACAAGC 1626
||||||||||||||
Sbjct 1606 CTCTTAAGACAAGC 1619
> Ahg935483 jgi|Araly1|935483|scaffold_403471.1
Length=1363
Score = 399 bits (216), Expect = 2e-110
Identities = 698/922 (76%), Gaps = 68/922 (7%)
Strand=Plus/Plus
Query 573 TTCAACAATTACTACGATCCGTCGT-TGAAACGTGCTCGTAGATCTCTGTTG-TCG-TCG 629
|||||| ||||||||||||| || | ||||||| || | | | || ||| ||| |
Sbjct 408 TTCAACGATTACTACGATCCATC-TCTGAAACGAGCAAG-ACA-AGCT-TTGCTCGAAAG 463
Query 630 -AGAGGGATCTTCGTCGTTGAAGGAGATC-TAAACGACG-CGAAGCTG-TTAGCAAAGCT 685
|| ||||||||| |||| |||||||| | ||||||||| |||| || || | |||||
Sbjct 464 AAGTGGGATCTTCATCGTAGAAGGAGA-CATAAACGACGTCGAA-TTGCTTCG-TAAGCT 520
Query 686 TTTCGATG-TGGT-TGCTTTCACTCACGTGATGCATCTCGCTGCTCAAGCTGGTGTTA-G 742
||| | | | || | | ||||| ||||| |||||| | || ||||||||||||| || |
Sbjct 521 ATTC-AAGATCGTCT-CCTTCACACACGTTATGCATTTAGCAGCTCAAGCTGGTG-TACG 577
Query 743 ATACGCTTTGGAGAATCCTCA-ATCGTATGTTCATAGCAACATCGCCGGACTTGTGAATC 801
||||| |||| || ||| | || |||||||||||||||||||||||| |||| ||||
Sbjct 578 GTACGCAATGGAAAACCCT-AGCTCTTATGTTCATAGCAACATCGCCGGATTTGTCAATC 636
Query 802 TTCTCGAGATTTGCAAAGCGGCGAATCCTCAGCCGGCGATAGTTTGGGCTTCATCGAGCT 861
| |||||||| |||||| | | |||||| || || || ||||| |||||||| || ||||
Sbjct 637 TCCTCGAGATCTGCAAATCTGTGAATCCACAACCTGCTATAGTCTGGGCTTCGTCTAGCT 696
Query 862 CCGTTTATGGACTCAACGA-GAAAGTTCCATTCTCTGA-ATCTGACCGGACGGATCAACC 919
|||| || ||||||||| | ||||||||| ||||| || | || || ||||||||
Sbjct 697 CCGTCTACGGACTCAAC-ACGAAAGTTCCGTTCTCGGAGA-AAGATAAAACAGATCAACC 754
Query 920 GGCGAGTCTCTACGCCGCAACGAAAAAAGCCGGCGAAGAAATCACCCACACTTATAACCA 979
||||||| | |||||||| || ||||||||||||||||| ||| | || || ||||||||
Sbjct 755 GGCGAGTTTATACGCCGCGACTAAAAAAGCCGGCGAAGAGATCGCACATACCTATAACCA 814
Query 980 TATTTACGGTCTT-GC-CATTACCGGTTTAAGATTCTTCACGGTTTACGGACCATGGGGT 1037
|| || || || | | | ||||| ||||| || |||||||| || ||||| |||||
Sbjct 815 CATCTATGG-ATTATCTC-TAACCGGATTAAGGTTTTTCACGGTGTATGGACCTTGGGGA 872
Query 1038 AGACCGGATATGGCTTACTTCTCCTTCACCAGAA-ACATCCTACAAGGTAAACCGA--TC 1094
||||| || ||||| || |||| |||||| | || | || ||| |||| ||| ||| ||
Sbjct 873 AGACCAGACATGGCGTATTTCTTCTTCACTA-AAGATATTCTAAAAGGCAAATCGATTTC 931
Query 1095 -ACAATC-TACCGGGGCAAAAACCGGGTCGATTTAGCCCGGGATTTCACATACATCGACG 1152
| | || | ||| | || | ||| || | || |||||||||| ||||||||||
Sbjct 932 GATATTCGAATCGGCG-AATCA-CGGAACG--GTGGCTAGGGATTTCACTTACATCGACG 987
Query 1153 ATATAGTGAAAGGATGTTTAG-GATCTCTGGATTCATCGG-GTAAAAGTACCGG--GTCG 1208
||||||||||||||||||||| | | || ||| | ||| | || ||||| || || |
Sbjct 988 ATATAGTGAAAGGATGTTTAGCGG-CGCTAGATACGGCGGAG-AAGAGTACAGGAAGT-G 1044
Query 1209 G-GTGGTAAAAA-ACGTGGAGCAGCACCGTACCG-GATATTTAACCTGGGAAACACATCT 1265
| | || || || | | || | || | | | | | |||||||| |||||||| ||
Sbjct 1045 GAG-GG-AAGAAGA-GAGGTCCGGCGCAATTGAGAG-TGTTTAACCTCGGAAACACGTCG 1100
Query 1266 CCGGTTACAGTACC-GATTCTGGTG-GATATATTGGAGA-AGCATTT-AAAGGTGAAAGC 1321
||||| | || | ||| |||||| || |||||||||| | || || |||| |||| ||
Sbjct 1101 CCGGTGCCGGTTTCAGAT-CTGGTGAGA-ATATTGGAGAGA-CAATTGAAAG-TGAAGGC 1156
Query 1322 GAAGAGGAACTTCG-TGGAGATGCCAGGAAACGGCGACGTACCGTTCACACATGCCAATA 1380
||||| ||| || | | |||||||| ||||||| ||||| ||||| || ||||| ||||
Sbjct 1157 GAAGAAGAATTT-GATTAAGATGCCACGAAACGGTGACGTTCCGTTTACTCATGCTAATA 1215
Query 1381 TTAGCTCAGCCCGAAA-TGAA-TTCGGGTATAAACCGACAACCGATTTGGAAACCGGGTT 1438
|||| | ||| | || ||| || || ||||||||||| || |||||| ||||||| ||
Sbjct 1216 TTAGTTTAGCTC-AACGTGAGCTT-GGTTATAAACCGACGACGGATTTGCAAACCGGTTT 1273
Query 1439 GAAGAAGTTCGTTAGATGGTAT 1460
||||||||| || |||||||||
Sbjct 1274 GAAGAAGTTTGTGAGATGGTAT 1295
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 60944392000
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5