BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G30450.1
Length=649
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491707 jgi|Araly1|491707|fgenesh2_kg.7__1140__AT4G30450.1 894 0.0
> Ahg491707 jgi|Araly1|491707|fgenesh2_kg.7__1140__AT4G30450.1
Length=638
Score = 894 bits (484), Expect = 0.0
Identities = 596/648 (92%), Gaps = 15/648 (2%)
Strand=Plus/Plus
Query 3 CTAATCAAGTTACACTATAAACTCAAACACATCTATCGGCAAGTCTTAACACACGAAGAT 62
||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 1 CTAATCAAGTTACACTATAAACTCAAATACATCGATCGGCAAGTCTTAACACACGAAGAT 60
Query 63 TTCCAAAATGGCTAAGGCCGAAGGTCTTTTTCTTCTTGGTTTAGTAGTTATTTCAAGTTT 122
|||||||||||||| |||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 61 TTCCAAAATGGCTAGGGCCCAAGGTCTTTTTCTTCTTGGTTTATTAGTTATTTCAAGTTT 120
Query 123 AGTTATGTTAACCGAGAGCCGACTCGCAAGAAAAGACTTGGGGATTGACCTAGGTGGGAT 182
|||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||
Sbjct 121 AGTTATGTTAACCGAGAGCCGAGTCGCAAGAAAAGACTTGGGGCTTGACCTAGGTGGGAT 180
Query 183 TGGAATCGGTTTGGGCGTTGGATTGGGGATTGGTCTTGGCGGCGGGTCGGGCTCCGGTGC 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TGGAATCGGTTTGGGCGTTGGATTGGGGATTGGTCTTGGCGGCGGGTCGGGCTCCGGTGC 240
Query 243 TGGTGCAGGTTCTGGATCAGGTTCAGGTTCCAGATCATCATCTAGCTCCAGCTCATCATC 302
|||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 241 TGGTGCAGGTTCTGGATCAGGTTCAGGTTCCAGATCATCATCTAGCTCTAGCTCGTCATC 300
Query 303 AAGTTCGAGTTCTAGTGGTTCGGGTGGTTCAGCTGGTTCATCTGCCGGTTCATTTGCTGG 362
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 301 AAGTTCGAGTTCTAGTGGTTCGGGTGGTTCAGCTGGTTCATCTGCTGGTTCATTTGCTGG 360
Query 363 CTCTAGAGCTGGATCAGGATCTGGTAACTAAATTATAATA---A-TTACTTTTCGACTTA 418
|||| |||||||||||||||||||||||||||||||||| | ||| ||||| |||||
Sbjct 361 ATCTAAAGCTGGATCAGGATCTGGTAACTAAATTATAATATGCAGTTAATTTTCTACTTA 420
Query 419 AAGTGTGAAACAATAAGTATGTTTTATGTTTTTGGTTCGTCGTAGTTAATATCGTATGTA 478
||||||||||| ||||||||||| |||||| |||||| |||||| ||| |||||||||||
Sbjct 421 AAGTGTGAAACTATAAGTATGTTGTATGTTGTTGGTTTGTCGTAATTAGTATCGTATGTA 480
Query 479 CGGAAT-GGAATGAATAATTTGTTACCGTAAGTTATGTTTTGTTTGAGCGAGTGTGTGTA 537
|| ||| ||| ||||||| ||| || ||||||||||||| |||||| ||||| |
Sbjct 481 CGAAATTGGA-TGAATAAACTGTCGCCATAAGTTATGTTTTATTTGAG----TGTGT--A 533
Query 538 CCTAGCTTACTCTCTCTATTCAAGTCTTTCACCAAAAGTAGAATCTCTTTAGATTTGGAA 597
|||||||||||||||| |||||||| ||| ||||||||||||||||||||||||||||
Sbjct 534 CCTAGCTTACTCTCTCAATTCAAGTATTTTGCCAAAAGTAGAATCTCTTTAGATTTGGAT 593
Query 598 CAGAACATGTTTGATTAATCGTAAATTATTGGTAATTCGAATTTGAGA 645
|||| |||||| || ||||||||||| ||||||| ||||||||||
Sbjct 594 CAGAGCATGTTCAATCAATCGTAAATT---GGTAATTTGAATTTGAGA 638
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23788700208
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5