BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G30470.1
Length=1379
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491705 jgi|Araly1|491705|fgenesh2_kg.7__1138__AT4G30470.1 1886 0.0
Ahg481248 jgi|Araly1|481248|fgenesh2_kg.4__308__AT2G23910.1 832 0.0
> Ahg491705 jgi|Araly1|491705|fgenesh2_kg.7__1138__AT4G30470.1
Length=1340
Score = 1886 bits (1021), Expect = 0.0
Identities = 1141/1196 (95%), Gaps = 20/1196 (2%)
Strand=Plus/Plus
Query 1 AACAGAAAAATAGTTCACCCAACTTTCTCCTATTAATACTTGCCTCTTCTCTCTTCCTAC 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 AACAGAAAAATAGTTCACCCAACTTTCTCCTATTAATACTTGCCTCTTCTCTCTTCCTAC 60
Query 61 TTCTAACCTTC-T-TT-TT-CTC--CTTCATCACACACATATACACACGCTTTCGTTTAA 114
||||||||||| | || || ||| |||||||||||||||||||||||||||||||||||
Sbjct 61 TTCTAACCTTCTTCTTCTTCCTCTTCTTCATCACACACATATACACACGCTTTCGTTTAA 120
Query 115 ACTCTCTCTGTTTCAATCATTAATCAGAAAGAAGCAACACAA-ATATGGATCACGACAAG 173
|||||||||| |||||||| |||||| ||||||||||| || |||||||||||||||||
Sbjct 121 ACTCTCTCTGCTTCAATCAATAATCA-CAAGAAGCAACA-AACATATGGATCACGACAAG 178
Query 174 TCTACTTCTTGTTGCTGCGTTCTTGATGCTTCCACTTATGTTGGTTTCTGGATTCTCAAG 233
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 179 TCCACTTCTTGTTGCTGCGTTCTTGATGCTTCCACTTATGTTGGTTTCTGGATTCTCAAG 238
Query 234 AAATTGCTTAGCAGAGGATACTCTGTTCACGCAGCGATTCGTAGAAACGGGGAGAGTGAA 293
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 239 AAATTGCTTAGCAGAGGATACTCTGTTCACGCAGCTATTCGTAGAAACGGGGAGAGTGAA 298
Query 294 ATTGAGGAGATGATCAGAGAGATGGAAACAACAGAAGAGAGATTAGTGGTGTACGATGTA 353
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 299 ATTGAGGAGATGATCAGAGAGATGGAAACAACAGAAGAGAGATTAGTGGTGTACGATGTA 358
Query 354 GATGTGTTGGATTATCAAAGCATACTTGTCTCTCTCAAGACATGTAACGTTGTCTTCTGT 413
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 GATGTGTTGGATTATCAAAGCATACTTGTCTCTCTCAAGACATGTAACGTTGTCTTCTGT 418
Query 414 TGCTTAGACAGCCCTGAAGGGTACGATGAGAAGGAGGTGGATTTGGAAGTGAGAGGAGCG 473
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 419 TGCTTAGATAGCCCTGAAGGGTACGATGAGAAGGAGGTGGATTTGGAAGTGAGAGGAGCC 478
Query 474 ATCAATGTGGTGGAAGCGTGTGGAAGAACAGAGAGTATAGAGAAGATTGTGTTTTCTTCT 533
||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||
Sbjct 479 ATCAATGTGGTGGAAGCATGTGGAAGAACAGAGAGTATAGAGAAGATTGTGTTCTCTTCT 538
Query 534 TCATTAACAGCTTCAATTTGGAGAGACAACATTGGAACTCAAAAGGATGTTGATGAGAAG 593
|| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 539 TCGTTAACAGCTTCAATTTGGAGAGACAACATTGGAACTCAGAAGGATGTTGATGAGAAG 598
Query 594 TGTTGGAGTGACCAAGACTTCTGTCGCAGCAAGAAGTTGTGGCATGCACTGGCAAAGATG 653
|||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||
Sbjct 599 TGTTGGAGTGACCAAGACTTCTGTCGCAACAAGAAGTTGTGGCATGCATTGGCAAAGATG 658
Query 654 TTGTCGGAGAAAGCAGCTTGGGCATTAGCCATGGACCGTAGGCTCAACATGGTCTCTATC 713
||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 659 TTGTCAGAGAAAGCAGCTTGGGCATTAGCCATGGACCGTAGGCTCAATATGGTCTCTATC 718
Query 714 AACCCTGGTCTTGTCGTCGGACCATCTGTCGCACAACACAACGCTAGGCCCACCATGTCA 773
|||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 719 AACCCTGGTCTTATCGTCGGACCATCGGTCGCACAACACAACGCTAGGCCCACCATGTCA 778
Query 774 TACCTTAAAGGAGCTGCACAAATGTATGAGAATGGTGTGTTAGCTTATGTAGACGTTAAG 833
||||| |||||||||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 779 TACCTCAAAGGAGCTGCACAAATGTATGAGAATGGTGTGTTAGCGTACGTAGACGTTAAG 838
Query 834 TTTCTAGCGGACGTTCATATTAGAGCATTCGAGGATGTTTCAGCTTGCGGTCGATACTTC 893
||| ||||||| ||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 839 TTTTTAGCGGATGTTCATATTAGAGCATTCGAGGATGTTTCGGCTTGCGGTCGATATTTC 898
Query 894 TGCTTCAACCAAATCGTCAACACAGAAGAAGAAGCTCTCAAGCTAGTGGAGAGTTTGTCT 953
|||||||||||||||||||||||||||||||||||||||||||| |||||| | ||||||
Sbjct 899 TGCTTCAACCAAATCGTCAACACAGAAGAAGAAGCTCTCAAGCTTGTGGAGCGCTTGTCT 958
Query 954 CCTTTGATTCCTATGCCACCGAGGTATGAGAATGAGATGCACGGAAGTGAAGTTTACGAA 1013
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 959 CCTTTGATACCTATGCCACCGAGGTATGAGAATGAGATGCACGGAAGTGAAGTTTACGAA 1018
Query 1014 GAAAGATTAAGGAACAACAAATTAAGCAAGCTGGTAGAAGCTGGCTCTGCTTGTTAAAGA 1073
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1019 GAAAGATTAAGGAACAATAAATTAAGCAAGCTGGTAGAAGCTGGCTCTGCTTGTTAAAGA 1078
Query 1074 AAGATTTCACAATTTAAATTGAAAGA-GACGAGATTATACaaa-aa-aaaG--TTGTAAT 1128
||||||||| ||||||||| ||| | || ||||||||||||| || |||| |||||||
Sbjct 1079 AAGATTTCATAATTTAAATCCAAA-ATGAAGAGATTATACAAACAAGAAAGGATTGTAAT 1137
Query 1129 TTGTATATTGATCTTCT-C--ATAGATGCATGTGTTG-CTTGTGAACTATTaaaaa 1180
||||||||||||||||| | |||||||||||||||| | ||||||||| |||||
Sbjct 1138 TTGTATATTGATCTTCTTCTCATAGATGCATGTGTTGTCC-GTGAACTATCAAAAA 1192
Score = 209 bits (113), Expect = 4e-53
Identities = 138/149 (93%), Gaps = 5/149 (3%)
Strand=Plus/Plus
Query 1223 TATATGAGTAGt-ttt-ttttttttGGCTGGGGGCACAATATGAATGTTTTCTAATTTTT 1280
|||||||||||| ||| |||||||| ||||||||||||||||||||| ||||||||||
Sbjct 1193 TATATGAGTAGTCTTTCTTTTTTTTTGCTGGGGGCACAATATGAATG--CTCTAATTTTT 1250
Query 1281 GTTAAACATATT-AAATCTTGGTGGGAGAGTTGTCGTATACGAACCTTTTAAAGCGATGT 1339
|||||||||||| ||| |||||||||||||||||||||||||||||| |||||||||||
Sbjct 1251 GTTAAACATATTAAAAAATTGGTGGGAGAGTTGTCGTATACGAACCTTATAAAGCGATGT 1310
Query 1340 TTCCTATAATTGTGCAATAATAATATGAA 1368
|||||||||||||||||||||| ||||||
Sbjct 1311 TTCCTATAATTGTGCAATAATAGTATGAA 1339
> Ahg481248 jgi|Araly1|481248|fgenesh2_kg.4__308__AT2G23910.1
Length=1126
Score = 832 bits (450), Expect = 0.0
Identities = 768/922 (83%), Gaps = 20/922 (2%)
Strand=Plus/Plus
Query 159 ATGGATCACGACAAGTCTACTTCTTGTTGCTGCGTTCTTGATGCTTCCACTTATGTTGGT 218
||| |||| || ||| | | |||||||||||| ||||||||||||||||||||||| |||
Sbjct 7 ATGAATCAAGAAAAGCCCATTTCTTGTTGCTGTGTTCTTGATGCTTCCACTTATGTGGGT 66
Query 219 TTCTGGATTCTCAAGAAATTGCTTAGC-AGAGGATACTCTGTTCACGCAGCGATTCGTAG 277
|||||||||||||||| |||||| | | ||||| ||||||||||||||||| || ||||
Sbjct 67 TTCTGGATTCTCAAGAGATTGCTCA-CTAGAGGTTACTCTGTTCACGCAGCTATCCGTAA 125
Query 278 AAACGGGGAGAGTGAAATTGAGGA-GATGATCAGAGAGATGGAAAC-AACAGAAGAGAGA 335
||||||||| |||| |||| || || || ||||| |||||| | || ||||||||||
Sbjct 126 AAACGGGGATAGTGTGCTTGAAGAGGA-AATTAGAGACATGGAAGCTAA-AGAAGAGAGA 183
Query 336 TTAGTGGTGTACGATGTAGATGTGTTGGATTATCAAAGCATACTTGTCTCTCTCAAGACA 395
|||| ||| || ||||| |||||||| ||||| ||||| || || | |||||||| | |
Sbjct 184 TTAGAGGTTTATGATGTGGATGTGTTAGATTACCAAAGTATCCTCATTTCTCTCAACA-A 242
Query 396 -TGTAACGTTGTCTTCTGTTGCTTAGACAGCCCTGAAGGGTACGAT---GAGAAGGAGGT 451
||||| | ||| |||||||| || |||| ||||||||||| ||| |||||||| ||
Sbjct 243 TTGTAATGCTGTGTTCTGTTGTTTGGACAATCCTGAAGGGTATGATGAGGAGAAGGAAGT 302
Query 452 GGATTTGGAAGTGAGAGGAGCGATCAATGTGGTGGAAGCGTGTGGAAGAACAGAGAGTAT 511
||||||||| ||||||||||| || |||||||||||||| |||| |||||||||||||||
Sbjct 303 GGATTTGGAGGTGAGAGGAGCTATTAATGTGGTGGAAGCATGTGCAAGAACAGAGAGTAT 362
Query 512 AGAGAAGATTGTGTTTTCTTCTTCATTAACAGCTTCAATTTGGAGAGACAACATTGGAAC 571
||||||||||||||| |||||||||||||| ||| ||||||||||||| |||||||||||
Sbjct 363 AGAGAAGATTGTGTTCTCTTCTTCATTAACTGCTGCAATTTGGAGAGATAACATTGGAAC 422
Query 572 TCA-AAAGGATGTTGATGAGAAGTGTTGGAGTGACCAAGACTTCTGTCGCAGCAAGAAGT 630
|| |||| ||||||||||||||||||||||||| | ||||| |||| | || ||||
Sbjct 423 ACAGAAAG-ATGTTGATGAGAAGTGTTGGAGTGATCTTGACTTTTGTCTAAAAAAAAAGT 481
Query 631 TGTGGCATGCACTGGCAAAGATGTTGTCGGAGAAAGCAGCTTGGGCATTAGCCATGGACC 690
|||||||||| || || |||| ||| ||||| ||||| ||||||||||||||||| |
Sbjct 482 TGTGGCATGCTCTTGCGAAGACACAGTCCGAGAAGGCAGCGTGGGCATTAGCCATGGATC 541
Query 691 GTA-GGCTCAACATGGTCTCTATCAACCCTGGTCTTGTCGTCGGACCATCTGTCGCACAA 749
||| || |||||||||| || | ||||| || || |||| |||||||| || || | |
Sbjct 542 GTATGG-TCAACATGGTTTCGGTTAACCCGGGCCTCATCGTTGGACCATCAGTGGCTCTA 600
Query 750 CACAACGCTAGGCCCACCATGTCATACCTTAAAGGAGCTGCACAAATGTATGAGAATGGT 809
|||||| |||| ||||| |||| ||||| |||| | ||||||| |||||||||||||||
Sbjct 601 CACAACCCTAGACCCAC--TGTCTTACCTCAAAG-ATCTGCACAGATGTATGAGAATGGT 657
Query 810 GTGTTAGCTTATGTAGACGTT-AAGTTTCTAGCGGACGTTCATATTAGAGCATTCGAGGA 868
|||||||| || ||||| ||| || ||| | ||||| ||||| ||| |||||||||| ||
Sbjct 658 GTGTTAGCATACGTAGATGTTGAA-TTTGTTGCGGATGTTCACATTCGAGCATTCGAAGA 716
Query 869 TGTTTCAGCTTGCGGTCGATACTTCTGCTTCAACCAAATCGTCAACACAGAAGAAGAAGC 928
| ||| ||||||||| ||||||| |||||||||||||| || || || |||||||||||
Sbjct 717 TACTTCGGCTTGCGGTAGATACTTTTGCTTCAACCAAATTGTGAATACGGAAGAAGAAGC 776
Query 929 TCTCAAGCTAGTGGAGAGTTTGTCTCCTTTGATTCCTATGCCACCGAGGTATGAGAATGA 988
|||||||| || | | | | |||||||| || ||||||||||| ||||||||||| ||
Sbjct 777 CCTCAAGCTTGTACAAACTCTATCTCCTTTAATACCTATGCCACCAAGGTATGAGAAAGA 836
Query 989 GATGCACGGAAGTGAAGTTTACGAAGAAAGATTAAGGAACAACAAATTAAGCAAGCTGGT 1048
|||||| |||||||||||||| ||||| ||||| || ||||| ||| ||| |||||||||
Sbjct 837 GATGCAAGGAAGTGAAGTTTATGAAGAGAGATTGAGAAACAAGAAACTAAACAAGCTGGT 896
Query 1049 AGAAGCTGGCTCTGCTTGTTAA 1070
|||||||| | ||||||||||
Sbjct 897 GGAAGCTGGATTTGCTTGTTAA 918
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51618429618
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5