BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G30480.2
Length=1165
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491703 jgi|Araly1|491703|fgenesh2_kg.7__1136__AT4G30480.2 1746 0.0
> Ahg491703 jgi|Araly1|491703|fgenesh2_kg.7__1136__AT4G30480.2
Length=1128
Score = 1746 bits (945), Expect = 0.0
Identities = 1080/1143 (94%), Gaps = 18/1143 (2%)
Strand=Plus/Plus
Query 8 CATCTT-GACCCTTCTTCTTCTCTATCGAGTGCTCTGGATTCTGATTTGATTTGTGAGGA 66
|||||| || ||||||||||||| | | ||| |||||||||| ||||| | ||||
Sbjct 1 CATCTTGGA-CCTTCTTCTTCTC--T--A--GCT-TGGATTCTGA---GATTTCTTAGGA 49
Query 67 AAGCTAGATCGACGATCGAATAAGTCTCGCGCTGAAATCTATCTTTGTGCAAGCAAACTC 126
||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||
Sbjct 50 AAGCTAGATCGACGATCGAATAAGTCTCGCGTTGAAATCTCTCTTTGTGCAAGCAAACTC 109
Query 127 TCGAAGAACCTTAGATTGAAGATGGTACTGATCGAATCAAGTGAGAGTGAAGACGAGATC 186
|||||||||| |||||||||||||||||||||||||||||||||| |||| || ||||||
Sbjct 110 TCGAAGAACCCTAGATTGAAGATGGTACTGATCGAATCAAGTGAGGGTGAGGATGAGATC 169
Query 187 CTCATCAAAAACGAACCAAAGCCAGCGTCTTCATCCTCACCGCAACCCACGGAGACGAAA 246
|||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||
Sbjct 170 CTCATCAAAAACGAACCAAAGCCATCGTCTTCATCCTCACCGCAACCCATGGAGACGAAA 229
Query 247 CAAGTCGACGGAGATGATTCCGATGGGTTCGAAACTGCCAGCGAACGTGAAATTAGCGAT 306
||||||||||||||||||||||| || ||||| |||||||||||||||||| ||||||||
Sbjct 230 CAAGTCGACGGAGATGATTCCGACGGTTTCGAGACTGCCAGCGAACGTGAAGTTAGCGAT 289
Query 307 GAAGAAGGAGAGGAAGATGGTACCAAAAATGACGCCGTCACGAGTCAGGAGGAACCACAG 366
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 290 GAAGAAGGAGAGGAAGATGGTACCAAAAACGACGCCGTCACGAGTCAGGAGGAACCACAA 349
Query 367 CACTCGGAGAAGAAGGAAGAGCA-GATTGAGCTAATGAGTGAAGGAGAAGCCATAGTCGA 425
|||||||||| ||||| |||||| | |||||||||||||||||||||||| |||||||||
Sbjct 350 CACTCGGAGACGAAGGGAGAGCATG-TTGAGCTAATGAGTGAAGGAGAAGTCATAGTCGA 408
Query 426 CGACGGATCAAACAAGGAGAAAGCTTTGGCAGAAGCAAATGAGGCTAAAGCGGAAGGAAA 485
||||||||||| | ||||||||||| |||||||||||||||||||||||| |||||||||
Sbjct 409 CGACGGATCAATCCAGGAGAAAGCTATGGCAGAAGCAAATGAGGCTAAAGTGGAAGGAAA 468
Query 486 TAAACTGTTCGTTAATGGCCTTTATGAAGAAGCATTGTCAAAGTATGCTTTTGCTTTAGA 545
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 469 TAAACTGTTCGTTAATGGCCTTTATGAAGAAGCATTGTCAAAGTATGCTTGTGCTTTAGA 528
Query 546 GCTTGTTCAGGAGTTACCTGAGTCTATAGAGCTTCGATCCATATGCTATTTAAACAGAGG 605
||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||
Sbjct 529 GCTTGTTCAGGAGTTTCCTGAGTCTATAGAGCTTCGATCCATATGCCATTTAAACAGAGG 588
Query 606 TGTATGTTTCCTCAAATTGGGTAAATGTGAAGAAACAATCAAGGAATGCACAAAAGCCTT 665
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 589 TGTATGTTTCCTCAAATTGGGTAAATGTGAAGAAACGATCAAGGAATGCACAAAAGCCTT 648
Query 666 AGAGCTAAATCCTACCTACAATAAGGCCTTGGTTCGAAGGGCTGAAGCACACGAGAAACT 725
|||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||
Sbjct 649 AGAGCTAAATCCTACCTACACTAAGGCCTTGGTTCGAAGGGCAGAAGCACACGAGAAACT 708
Query 726 TGAACACTTCGAAGATGCTGTCACGGACCTGAAGAAGATCTTAGAACTTGATCCTTCAAA 785
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 709 TGAACATTTCGAAGATGCTGTCACGGACCTGAAGAAGATCTTAGAACTTGATCCTTCAAA 768
Query 786 TGATCAAGCTAGGAAAGGGATTCGACGTCTTGAACCTCTTGCTGCTGAGAAGCGAGAAAA 845
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 769 TGATCAAGCTAAGAAAGGGATTCGACGTCTTGAACCTCTTGCTGCTGAGAAGCGAGAAAA 828
Query 846 GATGAAAGAAGAAGCTATAACTAAGCTGAAGGAGATGGGAAACTCGATTTTGGGTCGATT 905
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 829 GATGAAAGAAGAGGCTATAACTAAGCTGAAGGAGATGGGAAACTCGATTTTGGGTCGATT 888
Query 906 TGGAATGAGTGTGGACAACTTTAAGGCGGTTAAAGATCCCAACACTGGCTCCTACTCTCT 965
||| ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 889 TGGGATGAGTGTGGACAACTTCAAGGCTGTTAAAGATCCCAACACTGGCTCCTACTCTCT 948
Query 966 TTCTTTCCAAAACTAGTTTAATATCGTAGTTGCTCTTGATGTATTGCTTCTACCACTTAA 1025
||||||||||||||||| |||||||||||| | |||||||||||||||||||||||||||
Sbjct 949 TTCTTTCCAAAACTAGTATAATATCGTAGTGG-TCTTGATGTATTGCTTCTACCACTTAA 1007
Query 1026 ATGTTTAGCAACAATCTGGTTAATATTGCAATGTGTTATTGTTCTTGATGCATACATGAA 1085
|||||||||||||| |||||| ||||||||||||||||||||| |||||||| ||||||
Sbjct 1008 -TGTTTAGCAACAATATGGTTAGTATTGCAATGTGTTATTGTTCCTGATGCATTCATGAA 1066
Query 1086 AAGATGCAATTTCATTAG-ATTTAATATAGCAGTAAATCGAAAATTCAATGTTACAACAA 1144
||||||||||| | || | ||||||||||||||||||| ||||||||||||||||||||
Sbjct 1067 AAGATGCAATT-CTTTTGGATTTAATATAGCAGTAAATAAAAAATTCAATGTTACAACAA 1125
Query 1145 TGG 1147
|||
Sbjct 1126 TGG 1128
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43460125380
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5