BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G30490.1
Length=1947
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491701 jgi|Araly1|491701|fgenesh2_kg.7__1134__AT4G30490.1 2608 0.0
> Ahg491701 jgi|Araly1|491701|fgenesh2_kg.7__1134__AT4G30490.1
Length=1859
Score = 2608 bits (1412), Expect = 0.0
Identities = 1610/1704 (94%), Gaps = 20/1704 (1%)
Strand=Plus/Plus
Query 238 GAATTGAATTTGCATTGATCGTAGATGAGACCAATCATTAGGTTATCATCTCTCAGTAGA 297
||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct 175 GAATTGAATTTGCATTGATCGTAGATGAGACCAATCATTAGATCATCATCTCTCAGTAGA 234
Query 298 ATTAGATGGGCTCTAAGGAACAATCAAGAACGTTATTCTTCAACTTTCTACTCCAAAAGC 357
|||||||||||||| ||||||||||||||||| |||||||||||||| ||||| ||||||
Sbjct 235 ATTAGATGGGCTCTGAGGAACAATCAAGAACGCTATTCTTCAACTTTATACTCGAAAAGC 294
Query 358 CGCAAACTTTTGATCGGTGTCAATCAAAATCAAGCTCTGCTGAATACAAACACTGATAAT 417
|| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 295 CGTAAACTTTTGATCGGTGTCAATCAAAATCAAGCTCTGGTGAATACAAACACTGATAAT 354
Query 418 TCAAGTTTGTATTCAAGGTCAAGTATCTTTAGAGGCTTATCAGCAGAAGCAGTAGAAGCA 477
|||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||
Sbjct 355 TCAAGTTTGTATTCGAGGTTAAGTATCTTTAGAGGCTTATCAGCAGAAGCAGTAGAAGCT 414
Query 478 GCTGATCCTGCTACTACTAGGGTCACCGTCTCAGATGTGAATAGAACAGGTCCTCTTGTT 537
|||| ||||||||| |||||| |||||||||||||||||||||||||||| || ||||||
Sbjct 415 GCTGGTCCTGCTACCACTAGGCTCACCGTCTCAGATGTGAATAGAACAGGCCCGCTTGTT 474
Query 538 GAGTATGAGAGAAGAATCAGTAATGGTGAACTCATGACTGGTGATATCTGCCAAATTAGT 597
|||||||| |||||||||| | ||||||||||||||||||||||||||||||||||| ||
Sbjct 475 GAGTATGAAAGAAGAATCAATGATGGTGAACTCATGACTGGTGATATCTGCCAAATTGGT 534
Query 598 GCATTGAGAGAGCTTCAGAGACTATATGATGAGCTTGTGGATTCAGTAGATACATGTCGT 657
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 535 GCATTGAGAGAGCTTCAGAGACTATATGATGAGCTTGTGGATTCAGTAGATACTTGTCGT 594
Query 658 TTAGATCGGTATAATACTTCTGATAAATCCTCAAGAAGTCGTTGGTTTTGGTCTCGGCTC 717
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 595 TTAGATCGGTATAATACTTCTGATAAATCCTCAAGAAGTCGTTGGTTTTGGTCTCGGCTC 654
Query 718 ATGCCACAGACTTCTTACTCACCCGTCAAAGGATTATACCTTTATGGAGGTGTAGGTACA 777
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 655 ATGCCGCAGACTTCTTACTCACCCGTCAAAGGATTATACCTTTATGGAGGTGTAGGCACA 714
Query 778 GGAAAAACCATGTTGATGGACTTATTCTTTGATCAACTGCCTTGTACTTGGAAGAAGCAG 837
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 715 GGAAAAACCATGTTGATGGACTTATTCTTTGATCAATTGCCTTGTACTTGGAAGAAGCAG 774
Query 838 AGGATACATTTCCATGATTTCATGTTGAGTGTTCATAGCCGCTTGCAAAAGCACAAGGGT 897
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 775 AGGATACATTTCCATGATTTCATGTTGAGTGTTCATAGCCGCTTGCAAAAGCACAAGGGT 834
Query 898 TTATCAGATCCACTTGAAGTTGTTGCCCAAGAGATAGCTCATGATGCAATCTTACTATGT 957
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 835 TTATCAGATCCACTTGAAGTTGTTGCCCAAGAGATAGCTCATGATGCAATCTTACTATGT 894
Query 958 CTAGATGAGTTCATGGTAACTGATGTTGCAGATGCTCTAATACTAAACCGACTCTTTGGA 1017
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 895 CTAGATGAGTTCATGGTAACTGATGTTGCAGATGCTCTGATACTAAACCGACTCTTTGGA 954
Query 1018 CATCTGTTTAGCAATGGTGTTATTCTTGTTGCTACATCGAATCGGAATCCTGATAAACTC 1077
||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 955 CATCTCTTTAGCAATGGCGTTATTCTTGTTGCTACATCGAATCGGAATCCTGATAAACTC 1014
Query 1078 TATGAAGGAGGACTCCAAAGAGATCTGTTCCTACCTTTCATTTCTTCATTGAAGGAACGA 1137
|||||||||||||||||||| ||||| ||||||||||| || || |||||||||||||||
Sbjct 1015 TATGAAGGAGGACTCCAAAGGGATCTCTTCCTACCTTTTATCTCCTCATTGAAGGAACGA 1074
Query 1138 AGTGTGGTTCATGAGATCGGTTCAGCGGTTGATTACCGGAAACTAACTTCGGCTGAGCAA 1197
|||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||
Sbjct 1075 AGTGTGGTTCATGAGATCGGCTCAGAGGTTGATTACCGGAAACTAACTTCGGCTGAGCAA 1134
Query 1198 GGATTCTACTTCATTGGTAAAGATCTTTCGACCCTTTTGAAACAGAAGTTCCGACAATTG 1257
|||||||||||||| |||||||||||||||||||| |||||||||||||||| |||| ||
Sbjct 1135 GGATTCTACTTCATCGGTAAAGATCTTTCGACCCTATTGAAACAGAAGTTCCAACAACTG 1194
Query 1258 ATTGGAGACAATGTTGTTGCCCGTCCACAGGTAGTAGAAGTGGTGATGGGAAGAAAATTA 1317
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1195 ATTGGAGACAATGTTGTTGCGCGTCCACAGGTAGTAGAAGTGGTGATGGGAAGAAAATTA 1254
Query 1318 CAGATTCCATTAGGTGCCAATGGATGTGCATACTTTCCTTTTGAAGAGCTATGTGACCGA 1377
|||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1255 CAGATTCCTTTAGGTGCCAATGGATGTGCATACTTTCCTTTTGAAGAGTTATGTGACCGA 1314
Query 1378 CCTCTTGGAGCTGCGGATTACTTCGGTTTGTTCAAGAAGTTTCATACTCTTGCCTTGGAC 1437
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1315 CCTCTTGGAGCTGCGGATTACTTCGGTTTGTTCAAGAAGTTTCATACTCTTGCCTTGGAC 1374
Query 1438 GAAATTCCAGTGTTTGGGCTTCATAACCGTACTGCTGCATATAGATTCGTCACGCTAGTC 1497
| |||||||||||| |||||||||||||| |||||||| |||||||||||||||||||||
Sbjct 1375 GGAATTCCAGTGTTCGGGCTTCATAACCGCACTGCTGCGTATAGATTCGTCACGCTAGTC 1434
Query 1498 GATGTAATGTATGAGAACAGAGCGAGGTTGTTGTGTACAGCTGAAGCAAATCCTCAAGAA 1557
||||||||||||||||||||||||||||||||||| ||||||||||||| |||| ||||
Sbjct 1435 GATGTAATGTATGAGAACAGAGCGAGGTTGTTGTGCACAGCTGAAGCAAGTCCTTTAGAA 1494
Query 1558 CTTTTGGAAAAGATTATAACAATCTCAGAGGCGAAATCGATGGGTCCAAGAACATCATCA 1617
|| |||||||||||| ||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1495 CTCTTGGAAAAGATTGTAACAATCTCAGAGGCGAAATCGATGGCTCCAAGAACATCATCG 1554
Query 1618 AGATCAAGAAAGAACGATGTTACTGAGCTCTGCGTGGATAACGAATTAGGTTTCGCAAAA 1677
|||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 1555 AGATCAAGAAAGAACGATGTGACTGAGCTCTGCGTAGATAACGAATTAGGTTTCGCAAAA 1614
Query 1678 GACAGAACCATCAGTAGATTAACAGAAATGAACAGCAAAGAATACTTGGAGCACCATGCC 1737
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1615 GACAGAACCATCAGTAGATTAACAGAAATGAACAGCAAAGAATACTTGGAGCAGCATGCC 1674
Query 1738 ATAACACACAATCTGTAACACTCATACTAGACCCTTGATGATTCTTCATGGGATTCTTCA 1797
|||||||| ||||||||||||| | || |||||||||||| || ||||||||| || |
Sbjct 1675 ATAACACAGAATCTGTAACACTGACACAAGACCCTTGATGGTTTTTCATGGGAGTC---A 1731
Query 1798 ATTAAATCCTATAATAGCTTATTGTATTTTCTGTATCACACCAACAGATTGATCCGAACC 1857
|| | | | | | || ||||||| |||||||||||||||||||||| ||||||
Sbjct 1732 AT-AG--C-T-T----G-TT---GTATTTTATGTATCACACCAACAGATTGATACGAACC 1778
Query 1858 ATGAAAAGGAAATTGTTTTTCCATTGTTGTAACATTGAATTTTCGATTTACTGCTATATT 1917
||||||||||||| | | |||||||||||| |||||||||| |||||||||||||||
Sbjct 1779 ATGAAAAGGAAATAATAT--CCATTGTTGTAATATTGAATTTTTTATTTACTGCTATATT 1836
Query 1918 AAATCTAAT-GAAATTGCATCTTT 1940
||||| || ||| ||||||||||
Sbjct 1837 AAATCCAAAAGAA-TTGCATCTTT 1859
Score = 180 bits (97), Expect = 4e-44
Identities = 114/121 (94%), Gaps = 5/121 (4%)
Strand=Plus/Plus
Query 1 ATCTTCCTTATTTGACTACATCTCCGTTTATTCTTGGGtctctctctatctctctTATCC 60
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1 ATCTTCCTTATTTGACTACATCTCCGTTTATTCTTGGGTCTCTCT--ATCTCTCTTATCC 58
Query 61 AGATTTATCATCGTC-ATTACATATAAACA--TCAAACTTAACTTTTCAATATTCTCATT 117
|||||||||||| || |||||||||||||| |||||||||||||||||||||||| |||
Sbjct 59 AGATTTATCATCATCCATTACATATAAACACATCAAACTTAACTTTTCAATATTCTAATT 118
Query 118 C 118
|
Sbjct 119 C 119
Score = 78.7 bits (42), Expect = 2e-13
Identities = 52/56 (93%), Gaps = 3/56 (5%)
Strand=Plus/Plus
Query 136 TCTAATTCTTATCCGGATCCGATTTCTCTCATACAAAGATTCTGTTTTTCTTCTTG 191
|||||||||||||||||||||||||||| ||||||||||| |||||||||| |||
Sbjct 112 TCTAATTCTTATCCGGATCCGATTTCTC--ATACAAAGATTTTGTTTTTCTT-TTG 164
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73171360645
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5