BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G30490.1 Length=1947 Score E Sequences producing significant alignments: (Bits) Value Ahg491701 jgi|Araly1|491701|fgenesh2_kg.7__1134__AT4G30490.1 2608 0.0 > Ahg491701 jgi|Araly1|491701|fgenesh2_kg.7__1134__AT4G30490.1 Length=1859 Score = 2608 bits (1412), Expect = 0.0 Identities = 1610/1704 (94%), Gaps = 20/1704 (1%) Strand=Plus/Plus Query 238 GAATTGAATTTGCATTGATCGTAGATGAGACCAATCATTAGGTTATCATCTCTCAGTAGA 297 ||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||| Sbjct 175 GAATTGAATTTGCATTGATCGTAGATGAGACCAATCATTAGATCATCATCTCTCAGTAGA 234 Query 298 ATTAGATGGGCTCTAAGGAACAATCAAGAACGTTATTCTTCAACTTTCTACTCCAAAAGC 357 |||||||||||||| ||||||||||||||||| |||||||||||||| ||||| |||||| Sbjct 235 ATTAGATGGGCTCTGAGGAACAATCAAGAACGCTATTCTTCAACTTTATACTCGAAAAGC 294 Query 358 CGCAAACTTTTGATCGGTGTCAATCAAAATCAAGCTCTGCTGAATACAAACACTGATAAT 417 || |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 295 CGTAAACTTTTGATCGGTGTCAATCAAAATCAAGCTCTGGTGAATACAAACACTGATAAT 354 Query 418 TCAAGTTTGTATTCAAGGTCAAGTATCTTTAGAGGCTTATCAGCAGAAGCAGTAGAAGCA 477 |||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||| Sbjct 355 TCAAGTTTGTATTCGAGGTTAAGTATCTTTAGAGGCTTATCAGCAGAAGCAGTAGAAGCT 414 Query 478 GCTGATCCTGCTACTACTAGGGTCACCGTCTCAGATGTGAATAGAACAGGTCCTCTTGTT 537 |||| ||||||||| |||||| |||||||||||||||||||||||||||| || |||||| Sbjct 415 GCTGGTCCTGCTACCACTAGGCTCACCGTCTCAGATGTGAATAGAACAGGCCCGCTTGTT 474 Query 538 GAGTATGAGAGAAGAATCAGTAATGGTGAACTCATGACTGGTGATATCTGCCAAATTAGT 597 |||||||| |||||||||| | ||||||||||||||||||||||||||||||||||| || Sbjct 475 GAGTATGAAAGAAGAATCAATGATGGTGAACTCATGACTGGTGATATCTGCCAAATTGGT 534 Query 598 GCATTGAGAGAGCTTCAGAGACTATATGATGAGCTTGTGGATTCAGTAGATACATGTCGT 657 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 535 GCATTGAGAGAGCTTCAGAGACTATATGATGAGCTTGTGGATTCAGTAGATACTTGTCGT 594 Query 658 TTAGATCGGTATAATACTTCTGATAAATCCTCAAGAAGTCGTTGGTTTTGGTCTCGGCTC 717 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 595 TTAGATCGGTATAATACTTCTGATAAATCCTCAAGAAGTCGTTGGTTTTGGTCTCGGCTC 654 Query 718 ATGCCACAGACTTCTTACTCACCCGTCAAAGGATTATACCTTTATGGAGGTGTAGGTACA 777 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||| Sbjct 655 ATGCCGCAGACTTCTTACTCACCCGTCAAAGGATTATACCTTTATGGAGGTGTAGGCACA 714 Query 778 GGAAAAACCATGTTGATGGACTTATTCTTTGATCAACTGCCTTGTACTTGGAAGAAGCAG 837 |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 715 GGAAAAACCATGTTGATGGACTTATTCTTTGATCAATTGCCTTGTACTTGGAAGAAGCAG 774 Query 838 AGGATACATTTCCATGATTTCATGTTGAGTGTTCATAGCCGCTTGCAAAAGCACAAGGGT 897 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 775 AGGATACATTTCCATGATTTCATGTTGAGTGTTCATAGCCGCTTGCAAAAGCACAAGGGT 834 Query 898 TTATCAGATCCACTTGAAGTTGTTGCCCAAGAGATAGCTCATGATGCAATCTTACTATGT 957 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 835 TTATCAGATCCACTTGAAGTTGTTGCCCAAGAGATAGCTCATGATGCAATCTTACTATGT 894 Query 958 CTAGATGAGTTCATGGTAACTGATGTTGCAGATGCTCTAATACTAAACCGACTCTTTGGA 1017 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 895 CTAGATGAGTTCATGGTAACTGATGTTGCAGATGCTCTGATACTAAACCGACTCTTTGGA 954 Query 1018 CATCTGTTTAGCAATGGTGTTATTCTTGTTGCTACATCGAATCGGAATCCTGATAAACTC 1077 ||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 955 CATCTCTTTAGCAATGGCGTTATTCTTGTTGCTACATCGAATCGGAATCCTGATAAACTC 1014 Query 1078 TATGAAGGAGGACTCCAAAGAGATCTGTTCCTACCTTTCATTTCTTCATTGAAGGAACGA 1137 |||||||||||||||||||| ||||| ||||||||||| || || ||||||||||||||| Sbjct 1015 TATGAAGGAGGACTCCAAAGGGATCTCTTCCTACCTTTTATCTCCTCATTGAAGGAACGA 1074 Query 1138 AGTGTGGTTCATGAGATCGGTTCAGCGGTTGATTACCGGAAACTAACTTCGGCTGAGCAA 1197 |||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||| Sbjct 1075 AGTGTGGTTCATGAGATCGGCTCAGAGGTTGATTACCGGAAACTAACTTCGGCTGAGCAA 1134 Query 1198 GGATTCTACTTCATTGGTAAAGATCTTTCGACCCTTTTGAAACAGAAGTTCCGACAATTG 1257 |||||||||||||| |||||||||||||||||||| |||||||||||||||| |||| || Sbjct 1135 GGATTCTACTTCATCGGTAAAGATCTTTCGACCCTATTGAAACAGAAGTTCCAACAACTG 1194 Query 1258 ATTGGAGACAATGTTGTTGCCCGTCCACAGGTAGTAGAAGTGGTGATGGGAAGAAAATTA 1317 |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 1195 ATTGGAGACAATGTTGTTGCGCGTCCACAGGTAGTAGAAGTGGTGATGGGAAGAAAATTA 1254 Query 1318 CAGATTCCATTAGGTGCCAATGGATGTGCATACTTTCCTTTTGAAGAGCTATGTGACCGA 1377 |||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 1255 CAGATTCCTTTAGGTGCCAATGGATGTGCATACTTTCCTTTTGAAGAGTTATGTGACCGA 1314 Query 1378 CCTCTTGGAGCTGCGGATTACTTCGGTTTGTTCAAGAAGTTTCATACTCTTGCCTTGGAC 1437 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1315 CCTCTTGGAGCTGCGGATTACTTCGGTTTGTTCAAGAAGTTTCATACTCTTGCCTTGGAC 1374 Query 1438 GAAATTCCAGTGTTTGGGCTTCATAACCGTACTGCTGCATATAGATTCGTCACGCTAGTC 1497 | |||||||||||| |||||||||||||| |||||||| ||||||||||||||||||||| Sbjct 1375 GGAATTCCAGTGTTCGGGCTTCATAACCGCACTGCTGCGTATAGATTCGTCACGCTAGTC 1434 Query 1498 GATGTAATGTATGAGAACAGAGCGAGGTTGTTGTGTACAGCTGAAGCAAATCCTCAAGAA 1557 ||||||||||||||||||||||||||||||||||| ||||||||||||| |||| |||| Sbjct 1435 GATGTAATGTATGAGAACAGAGCGAGGTTGTTGTGCACAGCTGAAGCAAGTCCTTTAGAA 1494 Query 1558 CTTTTGGAAAAGATTATAACAATCTCAGAGGCGAAATCGATGGGTCCAAGAACATCATCA 1617 || |||||||||||| ||||||||||||||||||||||||||| ||||||||||||||| Sbjct 1495 CTCTTGGAAAAGATTGTAACAATCTCAGAGGCGAAATCGATGGCTCCAAGAACATCATCG 1554 Query 1618 AGATCAAGAAAGAACGATGTTACTGAGCTCTGCGTGGATAACGAATTAGGTTTCGCAAAA 1677 |||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||| Sbjct 1555 AGATCAAGAAAGAACGATGTGACTGAGCTCTGCGTAGATAACGAATTAGGTTTCGCAAAA 1614 Query 1678 GACAGAACCATCAGTAGATTAACAGAAATGAACAGCAAAGAATACTTGGAGCACCATGCC 1737 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 1615 GACAGAACCATCAGTAGATTAACAGAAATGAACAGCAAAGAATACTTGGAGCAGCATGCC 1674 Query 1738 ATAACACACAATCTGTAACACTCATACTAGACCCTTGATGATTCTTCATGGGATTCTTCA 1797 |||||||| ||||||||||||| | || |||||||||||| || ||||||||| || | Sbjct 1675 ATAACACAGAATCTGTAACACTGACACAAGACCCTTGATGGTTTTTCATGGGAGTC---A 1731 Query 1798 ATTAAATCCTATAATAGCTTATTGTATTTTCTGTATCACACCAACAGATTGATCCGAACC 1857 || | | | | | || ||||||| |||||||||||||||||||||| |||||| Sbjct 1732 AT-AG--C-T-T----G-TT---GTATTTTATGTATCACACCAACAGATTGATACGAACC 1778 Query 1858 ATGAAAAGGAAATTGTTTTTCCATTGTTGTAACATTGAATTTTCGATTTACTGCTATATT 1917 ||||||||||||| | | |||||||||||| |||||||||| ||||||||||||||| Sbjct 1779 ATGAAAAGGAAATAATAT--CCATTGTTGTAATATTGAATTTTTTATTTACTGCTATATT 1836 Query 1918 AAATCTAAT-GAAATTGCATCTTT 1940 ||||| || ||| |||||||||| Sbjct 1837 AAATCCAAAAGAA-TTGCATCTTT 1859 Score = 180 bits (97), Expect = 4e-44 Identities = 114/121 (94%), Gaps = 5/121 (4%) Strand=Plus/Plus Query 1 ATCTTCCTTATTTGACTACATCTCCGTTTATTCTTGGGtctctctctatctctctTATCC 60 ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 1 ATCTTCCTTATTTGACTACATCTCCGTTTATTCTTGGGTCTCTCT--ATCTCTCTTATCC 58 Query 61 AGATTTATCATCGTC-ATTACATATAAACA--TCAAACTTAACTTTTCAATATTCTCATT 117 |||||||||||| || |||||||||||||| |||||||||||||||||||||||| ||| Sbjct 59 AGATTTATCATCATCCATTACATATAAACACATCAAACTTAACTTTTCAATATTCTAATT 118 Query 118 C 118 | Sbjct 119 C 119 Score = 78.7 bits (42), Expect = 2e-13 Identities = 52/56 (93%), Gaps = 3/56 (5%) Strand=Plus/Plus Query 136 TCTAATTCTTATCCGGATCCGATTTCTCTCATACAAAGATTCTGTTTTTCTTCTTG 191 |||||||||||||||||||||||||||| ||||||||||| |||||||||| ||| Sbjct 112 TCTAATTCTTATCCGGATCCGATTTCTC--ATACAAAGATTTTGTTTTTCTT-TTG 164 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 73171360645 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5