BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G30500.1
Length=746
Score E
Sequences producing significant alignments: (Bits) Value
Ahg353759 jgi|Araly1|353759|fgenesh1_pg.C_scaffold_7000932 809 0.0
> Ahg353759 jgi|Araly1|353759|fgenesh1_pg.C_scaffold_7000932
Length=522
Score = 809 bits (438), Expect = 0.0
Identities = 495/523 (95%), Gaps = 2/523 (0%)
Strand=Plus/Plus
Query 72 ATGGCGAATCAAGGAGCAAAGAAGAGGAAAGATGAGAACGCTCGACACATGGCTAAGCTC 131
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGCGAATCAAGGAGCAAAGAAGCGGAAAGATGAGAACGCTCGACACATGGCTAAGCTC 60
Query 132 CGTCTCATTATGATCCT-TTGCAACATTTTGTATGTCCTAGTGAGGGTTATAATTTCGCA 190
||||| || ||||| || |||||||||||||||||| |||||||||| |||||||||||
Sbjct 61 CGTCTTATAATGAT-CTGCTGCAACATTTTGTATGTCATAGTGAGGGTGATAATTTCGCA 119
Query 191 TTCAAGTCATACCTGGAAAAATTGGATTGGTCTTGTGTTAACATCGTTAGGTTACGGGAT 250
|||||| |||||||||||| ||||||||||||||||| |||||||||||||||||| ||
Sbjct 120 TTCAAGCCATACCTGGAAACATTGGATTGGTCTTGTGGTAACATCGTTAGGTTACGCCAT 179
Query 251 TCCATATAAGCTTCTTCATCAAATGGCAAAGCCTAGTGTTAGTGATGCTGGTGAACTTCT 310
||| |||||||||||| |||||||||||||||||||||||||||||| ||||||||||||
Sbjct 180 TCCTTATAAGCTTCTTAATCAAATGGCAAAGCCTAGTGTTAGTGATGATGGTGAACTTCT 239
Query 311 TGATGGTGGATTTGACATGAGCACTCCTGGAATGTGTGGATATTTGCATGATGTACTCTA 370
||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 240 TGACGGTGGATTTGACATGAGCACTGGTGGAATGTGTGGATATTTGCATGATGTACTCTA 299
Query 371 CATCACCTGCTTTGTGCAGGTCGGATCTATCATCTCTGGAAAGTTTTGGTACGCGTATTT 430
||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||
Sbjct 300 CATCACCTGCTTTGTGCAGCTCGGATCTATCATCTCTGGAAAGTTTTGGTACGCATATTT 359
Query 431 AGTGATCCCTGCATTTGGAGCATACAAAGCTTCTGGTCTTATTAAGGGACTATTGTCACA 490
|||||| |||||||||||||| ||||||||||||||||||||||||||| ||||||||||
Sbjct 360 AGTGATTCCTGCATTTGGAGCCTACAAAGCTTCTGGTCTTATTAAGGGATTATTGTCACA 419
Query 491 TGGTTCAGAGGGAGGTGTTGAGGATGAGAAGACTCGCAAAAAGAGGGAGAAGATGGAGAG 550
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 420 TGGTTCAGAGGGAGGTGTAGAGGATGAGAAGACTCGCAAAAAGAGGGAGAAGATGGAGAA 479
Query 551 AAAAGCTTCTAGAGGACAAGTCGTTAAGACAAGATCTCGATGA 593
|||||||||||||||||||||||| ||||||||||| ||||||
Sbjct 480 AAAAGCTTCTAGAGGACAAGTCGTCAAGACAAGATCACGATGA 522
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27486623157
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5