BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: halleri_transcript_ahg.fa 32,672 sequences; 38,939,717 total letters Query= AT4G30510.1 Length=1261 Score E Sequences producing significant alignments: (Bits) Value Ahg944939 jgi|Araly1|944939|scaffold_701168.1 1609 0.0 > Ahg944939 jgi|Araly1|944939|scaffold_701168.1 Length=979 Score = 1609 bits (871), Expect = 0.0 Identities = 943/979 (96%), Gaps = 0/979 (0%) Strand=Plus/Plus Query 141 GAGCCTTTGTTATTGTTGAGATGTTGTATAGCTCAGATCTACTTGCAATTGTTGGAGCTG 200 |||| ||||||||||||||||||||||||||||||||||||||||| |||||||| |||| Sbjct 1 GAGCTTTTGTTATTGTTGAGATGTTGTATAGCTCAGATCTACTTGCCATTGTTGGTGCTG 60 Query 201 GTGAACAGGCTTCTCTATCCCCACGGCGTCTTTGTTTGTTCAAGACCACAACGGGTTTAC 260 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 GTGAACAGGCTTCTCTATCCCCACGGCGTCTTTGTTTGTTCAAGACCACAACGGGTTTAC 120 Query 261 CTCTTAGGGAATTGAATTTTTTAACTTCTATACTCGCTGTTCGTATGAACAAGAAAAGAC 320 |||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| Sbjct 121 CTCTTAGGGAATTGAACTTTTTAACTTCTATACTCGCTGTCCGTATGAACAAGAAAAGAC 180 Query 321 TTGTTGTTGTGCTGCTAGAGAAAACATTCGTTTACGACTTGAATACTCTTGTCATGCTTG 380 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 181 TTGTTGTTGTGCTGCTAGAGAAAACATTCGTTTACGACTTGAATACTCTTGTCATGCTTG 240 Query 381 ATACTATCGACACCGTGCCAAATCCAAAAGGTCTATCTGCATTCTCTCCATCTCTTGAAG 440 |||||||| | |||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 241 ATACTATCTATACCGTGCCAAATCCTAAAGGTCTATCTGCATTCTCTCCATCTCTTGAAG 300 Query 441 GCTGCTACTTAGCTGTTCCAGCTAGTACGACGAAAGGATCTGTTTTGGTGTATAACGTCA 500 |||||||||||||||||||||||||| |||||||||| || ||||||||||||||||||| Sbjct 301 GCTGCTACTTAGCTGTTCCAGCTAGTGCGACGAAAGGGTCGGTTTTGGTGTATAACGTCA 360 Query 501 TGGATTTGCAGTCTCATAGTGAGATTGATGCACATCGTTCTCCATTGGCTGCGATTGCAC 560 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct 361 TGGATTTGCAGTCTCATAGTGAGATAGATGCACATCGTTCTCCATTGGCTGCGATTGCAC 420 Query 561 TGTCTTCAAATGGAATGTACATTGCTACAGGATCTGAGCAAGGAACCTTGATCCGAGTCC 620 | || ||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 421 TCTCATCAAATGGAATGTACATTGCTACAGCTTCTGAGCAAGGAACCTTGATCCGAGTCC 480 Query 621 ATCTTGTTTCAGAAGCAACTAAGTCATATAGTTTCAGGAGAGGAACATACCCATCTACTA 680 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 481 ATCTTGTTTCGGAAGCAACTAAGTCATATAGTTTCAGGAGAGGAACATACCCATCTACTA 540 Query 681 TATATTCACTGTCTTTTGGACCATCGACACAGCTTCCAGATATATTAATTGCAACTAGTT 740 |||| |||||||||||||||||||||||||||||||| ||||||||||||||||| |||| Sbjct 541 TATACTCACTGTCTTTTGGACCATCGACACAGCTTCCGGATATATTAATTGCAACGAGTT 600 Query 741 CTTCAGGCTCCATTCATGCCTTCTCTTTAAGTTTGGCCATAAACCAAAGAAGCAAAAGGT 800 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 601 CTTCAGGCTCCATTCATGCCTTCTCTTTAAGTTTGGCCATAAACCAAAGAAGCAAAAGGT 660 Query 801 CTACTAGCTTTCTTGGATCGGTTCTTCCCGACAGTGTGAGTGATGCACTAGATCCAGCTC 860 |||| |||||||||||||| |||||||| ||||| ||||||||||||||||||||||||| Sbjct 661 CTACCAGCTTTCTTGGATCAGTTCTTCCGGACAGCGTGAGTGATGCACTAGATCCAGCTC 720 Query 861 ATCATCATGTGCTTCAAAACGCAGTTTCTTCCGGGATTAGAAGTTATGCCGTGGTTAGGA 920 ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 721 ATCATCATGTGCTTCAAAACGCAGTTTCTTCCGGGATTAGAAGTTATGCAGTGGTTAGGA 780 Query 921 AGATAGACAAACTTGAAGGAACATCATCTCCATCTCATTTTACATCTCTTAGAGCAACGG 980 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 781 AGATAGACAAACTTGAAGGAACATCATCTCCATCTCAGTTTACATCTCTTAGAGCAACGG 840 Query 981 TATCGGTGATCACTTATAACGGATATTTCCAGGAGTATACGCTAAGTATCAATAACAAGA 1040 |||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 841 TATCGGTGATTACTTATAACGGGTATTTCCAGGAGTATACGCTAAGTATCAATAACAAGA 900 Query 1041 ATGAGTCTCTATGGACACTGGAACGTGAATTCAATCTCTTCTCCATAACCACCGGGTGAT 1100 |||||||| |||||||| |||||||||||||||| |||||||| ||||| |||||||||| Sbjct 901 ATGAGTCTTTATGGACAATGGAACGTGAATTCAACCTCTTCTCAATAACAACCGGGTGAT 960 Query 1101 GTATACAACCAAATATCAA 1119 ||||| || |||||| ||| Sbjct 961 GTATAAAATCAAATACCAA 979 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 47119925412 Database: halleri_transcript_ahg.fa Posted date: Sep 25, 2014 2:02 AM Number of letters in database: 38,939,717 Number of sequences in database: 32,672 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5