BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G30510.1
Length=1261
Score E
Sequences producing significant alignments: (Bits) Value
Ahg944939 jgi|Araly1|944939|scaffold_701168.1 1609 0.0
> Ahg944939 jgi|Araly1|944939|scaffold_701168.1
Length=979
Score = 1609 bits (871), Expect = 0.0
Identities = 943/979 (96%), Gaps = 0/979 (0%)
Strand=Plus/Plus
Query 141 GAGCCTTTGTTATTGTTGAGATGTTGTATAGCTCAGATCTACTTGCAATTGTTGGAGCTG 200
|||| ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 1 GAGCTTTTGTTATTGTTGAGATGTTGTATAGCTCAGATCTACTTGCCATTGTTGGTGCTG 60
Query 201 GTGAACAGGCTTCTCTATCCCCACGGCGTCTTTGTTTGTTCAAGACCACAACGGGTTTAC 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GTGAACAGGCTTCTCTATCCCCACGGCGTCTTTGTTTGTTCAAGACCACAACGGGTTTAC 120
Query 261 CTCTTAGGGAATTGAATTTTTTAACTTCTATACTCGCTGTTCGTATGAACAAGAAAAGAC 320
|||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 121 CTCTTAGGGAATTGAACTTTTTAACTTCTATACTCGCTGTCCGTATGAACAAGAAAAGAC 180
Query 321 TTGTTGTTGTGCTGCTAGAGAAAACATTCGTTTACGACTTGAATACTCTTGTCATGCTTG 380
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 TTGTTGTTGTGCTGCTAGAGAAAACATTCGTTTACGACTTGAATACTCTTGTCATGCTTG 240
Query 381 ATACTATCGACACCGTGCCAAATCCAAAAGGTCTATCTGCATTCTCTCCATCTCTTGAAG 440
|||||||| | |||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 241 ATACTATCTATACCGTGCCAAATCCTAAAGGTCTATCTGCATTCTCTCCATCTCTTGAAG 300
Query 441 GCTGCTACTTAGCTGTTCCAGCTAGTACGACGAAAGGATCTGTTTTGGTGTATAACGTCA 500
|||||||||||||||||||||||||| |||||||||| || |||||||||||||||||||
Sbjct 301 GCTGCTACTTAGCTGTTCCAGCTAGTGCGACGAAAGGGTCGGTTTTGGTGTATAACGTCA 360
Query 501 TGGATTTGCAGTCTCATAGTGAGATTGATGCACATCGTTCTCCATTGGCTGCGATTGCAC 560
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 361 TGGATTTGCAGTCTCATAGTGAGATAGATGCACATCGTTCTCCATTGGCTGCGATTGCAC 420
Query 561 TGTCTTCAAATGGAATGTACATTGCTACAGGATCTGAGCAAGGAACCTTGATCCGAGTCC 620
| || ||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 421 TCTCATCAAATGGAATGTACATTGCTACAGCTTCTGAGCAAGGAACCTTGATCCGAGTCC 480
Query 621 ATCTTGTTTCAGAAGCAACTAAGTCATATAGTTTCAGGAGAGGAACATACCCATCTACTA 680
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 481 ATCTTGTTTCGGAAGCAACTAAGTCATATAGTTTCAGGAGAGGAACATACCCATCTACTA 540
Query 681 TATATTCACTGTCTTTTGGACCATCGACACAGCTTCCAGATATATTAATTGCAACTAGTT 740
|||| |||||||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct 541 TATACTCACTGTCTTTTGGACCATCGACACAGCTTCCGGATATATTAATTGCAACGAGTT 600
Query 741 CTTCAGGCTCCATTCATGCCTTCTCTTTAAGTTTGGCCATAAACCAAAGAAGCAAAAGGT 800
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 CTTCAGGCTCCATTCATGCCTTCTCTTTAAGTTTGGCCATAAACCAAAGAAGCAAAAGGT 660
Query 801 CTACTAGCTTTCTTGGATCGGTTCTTCCCGACAGTGTGAGTGATGCACTAGATCCAGCTC 860
|||| |||||||||||||| |||||||| ||||| |||||||||||||||||||||||||
Sbjct 661 CTACCAGCTTTCTTGGATCAGTTCTTCCGGACAGCGTGAGTGATGCACTAGATCCAGCTC 720
Query 861 ATCATCATGTGCTTCAAAACGCAGTTTCTTCCGGGATTAGAAGTTATGCCGTGGTTAGGA 920
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 721 ATCATCATGTGCTTCAAAACGCAGTTTCTTCCGGGATTAGAAGTTATGCAGTGGTTAGGA 780
Query 921 AGATAGACAAACTTGAAGGAACATCATCTCCATCTCATTTTACATCTCTTAGAGCAACGG 980
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 781 AGATAGACAAACTTGAAGGAACATCATCTCCATCTCAGTTTACATCTCTTAGAGCAACGG 840
Query 981 TATCGGTGATCACTTATAACGGATATTTCCAGGAGTATACGCTAAGTATCAATAACAAGA 1040
|||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 841 TATCGGTGATTACTTATAACGGGTATTTCCAGGAGTATACGCTAAGTATCAATAACAAGA 900
Query 1041 ATGAGTCTCTATGGACACTGGAACGTGAATTCAATCTCTTCTCCATAACCACCGGGTGAT 1100
|||||||| |||||||| |||||||||||||||| |||||||| ||||| ||||||||||
Sbjct 901 ATGAGTCTTTATGGACAATGGAACGTGAATTCAACCTCTTCTCAATAACAACCGGGTGAT 960
Query 1101 GTATACAACCAAATATCAA 1119
||||| || |||||| |||
Sbjct 961 GTATAAAATCAAATACCAA 979
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47119925412
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5