BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G30540.1
Length=778
Score E
Sequences producing significant alignments: (Bits) Value
Ahg353756 jgi|Araly1|353756|fgenesh1_pg.C_scaffold_7000929 1155 0.0
> Ahg353756 jgi|Araly1|353756|fgenesh1_pg.C_scaffold_7000929
Length=753
Score = 1155 bits (625), Expect = 0.0
Identities = 706/746 (95%), Gaps = 2/746 (0%)
Strand=Plus/Plus
Query 1 ATGGTGAAGCAGATAAGAAGATACGCTCTATTTCAAGCCACGCCAGATTCTGAGTTCGTG 60
|||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1 ATGGTGAAGCAGGTAAGAAGATACGCTCTATTTCAGGCCACGCCAGATTCTGAGTTCGTG 60
Query 61 AAGGAGATGTACGGAGGCTACTTCAACGTATTCGTGTCGGCTTTCGGAGACGAAGGAGAG 120
|||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 61 AAGGAGATGTACGGAGGCTACTTCAACGTATTTGTGTCAGCTTTCGGAGACGAAGGAGAG 120
Query 121 CAATGGGATCTTTTCCGTGTGATCGACGGCGAGTTTCCTCGCGACGAAGATCTTGAGAAG 180
||||||||||||||||||||||| ||||||||||||||||| ||||| ||||||||||||
Sbjct 121 CAATGGGATCTTTTCCGTGTGATAGACGGCGAGTTTCCTCGTGACGACGATCTTGAGAAG 180
Query 181 TATGAGGGATTCGTCATTAGTGGGAGTTTACATGACGCTTTCACAGAAGAGGATTGGATC 240
||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 181 TATGACGGATTCGTCATTAGCGGGAGTTTACATGACGCTTTCACAGAAGAGGATTGGATC 240
Query 241 ATTGAGCTTTGCTCTGTTTGCAAAAAACTTGATGTGATGAAGAAGAAAATTCTTGGCATA 300
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 ATTGAGCTTTGCACTGTTTGCAAAAAACTTGATGTGATGAAGAAGAAAATTCTTGGCATA 300
Query 301 TGCTTTGGTCACCAGATCATATGTAGAGTAAGAGGTGGGAAAGTGGGAAGGGCTCGTAAA 360
||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||| |
Sbjct 301 TGCTTTGGTCACCAGATAATATGTAGAATAAGAGGTGGGAAAGTGGGAAGGGCTCGTAGA 360
Query 361 GGACCAGACATAGGCCTCGGTAACATAACGATCGTTCAAGATGTGATCAAACCGGGTGAT 420
||||||||| ||||||| |||||||||||||||||| ||||| |||||||||| |||| |
Sbjct 361 GGACCAGACCTAGGCCTGGGTAACATAACGATCGTTAAAGATTTGATCAAACCAGGTGGT 420
Query 421 TACTTCGATCAAATCGAGTCATTGTCGATCATACAATGTCATCGAGACGAAGTACTTGAG 480
||||||||| ||| ||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 421 TACTTCGATGAAACCGAGTCATTGTCGATCATAAAATGTCATCGAGACGAAGTACTTGAG 480
Query 481 CCTCCAGAGTCGGCTAGAGTCATAGGATTCTCAGACAAA-TGCGACGTTGAGATATTCTC 539
|||| |||||||| | |||||| |||||||| || ||| |||||||| |||||||||||
Sbjct 481 GCTCCTGAGTCGGCCATAGTCATTGGATTCTCGGA-AAAGTGCGACGTAGAGATATTCTC 539
Query 540 AGTGGAAGATCACTTGCTTTGCTTTCAAGGTCATCCCGAGTATAACAAAGAGATTCTCCT 599
||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 540 AGTAGAAGATCACTTGCTTTGCTTTCAAGGTCATCCCGAGTATAACAAGGAGATTCTCCT 599
Query 600 TGAGATCATTGATCGTGTCCACAAGATCAAATTTGTTGAGGAGGAAATTTTGGAGAAAGC 659
|||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 600 TGAGATCATTGATCGTGTCCACAAGATCAAATTTATTGAGGAGGAAATTGTGGAGAAAGC 659
Query 660 AAAGGATTCGATCAAGAAGTTTGAACCAGACACGCAGCGTTTGCACATGCTTTGCAAGAA 719
|||||| |||||| ||||| |||||||||||||||||||||| |||||||||||||||||
Sbjct 660 AAAGGACTCGATCGAGAAGATTGAACCAGACACGCAGCGTTTACACATGCTTTGCAAGAA 719
Query 720 TTTTCTGAAAGGACGAAGAACCCACT 745
|||||| |||||||||||||||||||
Sbjct 720 TTTTCTCAAAGGACGAAGAACCCACT 745
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 28706556501
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5