BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G30550.1
Length=1106
Score E
Sequences producing significant alignments: (Bits) Value
Ahg328661 jgi|Araly1|328661|fgenesh1_pm.C_scaffold_7000888 1110 0.0
Ahg899717 jgi|Araly1|899717|Al_scaffold_0004_367 457 9e-128
> Ahg328661 jgi|Araly1|328661|fgenesh1_pm.C_scaffold_7000888
Length=747
Score = 1110 bits (601), Expect = 0.0
Identities = 703/752 (93%), Gaps = 7/752 (1%)
Strand=Plus/Plus
Query 209 ATGGTGGTTATTGAGCAGAAGAAGAGGTTTGCTTTGTTTTTAGCGACGTGTGATTCAGAG 268
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGTGGTGGTTGAGCAGAAGAAGAGGTTTGCTTTGTTTTTAGCGACGTGTGATTCAGAG 60
Query 269 TTCGTGAAGAAGACTTACGGTGGTTACTTCAATGTCTTCGTTTCAACTTTCGGCGAAGAA 328
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 61 TTCGTGAAGAAGACTTACGGTGGTTACTTCAATGTCTTCGTTTCGACTTTCGGCGATGAA 120
Query 329 GGTGAGCAATGGGATCTATTCCGAGTCATCGACGGACAA-TTTCCCGACGAGAATGATTT 387
||||||||||||||||||||||||||||| ||||| | | ||||||||||| || |||||
Sbjct 121 GGTGAGCAATGGGATCTATTCCGAGTCATTGACGG-CGACTTTCCCGACGAAAAGGATTT 179
Query 388 AGACAAGTACGACGGTTTCGTTATCAGTGGTAGTCCACATGATGCTTTCGGAGACGCCGA 447
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 180 AGACAAGTACGACGGTTTCGTTATCAGTGGTAGTCCACATGATGCTTTCGGAGACGTCGA 239
Query 448 TTGGATTGTTAAGCTTTGCGAAGTTTGTCAGAAACTTGATC-ACATGAAGAAGAAAGTTC 506
||||||||||||||||||||| ||||||||||||||||| | |||||||||||||||| |
Sbjct 240 TTGGATTGTTAAGCTTTGCGAGGTTTGTCAGAAACTTGA-CGACATGAAGAAGAAAGTCC 298
Query 507 TCGGCATCTGCTTCGGCCACCAGATAATTACTAGAGTTAAAGGTGGGAAGATAGGAAGAG 566
|||||||||| || ||||||||||||||||||||||| ||||||||||| |||||||| |
Sbjct 299 TCGGCATCTGTTTTGGCCACCAGATAATTACTAGAGTCAAAGGTGGGAAAATAGGAAGGG 358
Query 567 CACTCAAAGGTGCAGATATGGGACTTAGAAGCATAACCATAGCGAAAGACAATGAAAAAC 626
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 359 CACTCAAAGGTGCAGATATGGGACTTAGAAGCATAACCATAGCGAAGGACAATGAAAAAC 418
Query 627 TACGAGGTTACTTTGGAGACGTTGAGGTCCCAGCATCTTTAGCTATTATAAAATGTCATC 686
|||| ||||||||||||||| |||| || ||||||||||||||||||||||| ||||
Sbjct 419 TACGCCGTTACTTTGGAGACG---AGGTACCGGCATCTTTAGCTATTATAAAATGCCATC 475
Query 687 AGGATGAAGTGTTGGAACTTCCTGAGTCTGCTACACTACTTGCTTCTTCTGAGGTATGTA 746
|||||||||| |||||||| ||||||||||||||| ||||||| ||||||||||| ||
Sbjct 476 AGGATGAAGTTTTGGAACTCCCTGAGTCTGCTACATTACTTGCATCTTCTGAGGTTTGCG 535
Query 747 ACGTCGAGATGTTCTCTATTGGAGATCATTTTTTCTGTATTCAAGGGCATCCAGAGTATA 806
| || ||||||||||||||||||||| |||||||||| || ||||||||||| |||||||
Sbjct 536 AGGTTGAGATGTTCTCTATTGGAGATAATTTTTTCTGCATCCAAGGGCATCCCGAGTATA 595
Query 807 ACAAAGAGATTCTGTTTGAGATTGTGGACCGAGTCCTTAATATGAAGCTGATGGAGCAAG 866
|||||||||||||||||||||| || ||||| || |||||||||| |||||||||||||
Sbjct 596 ACAAAGAGATTCTGTTTGAGATCGTCGACCGTGTTTTTAATATGAAACTGATGGAGCAAG 655
Query 867 AGTTTGCGGATAAGGCAAAGAGTACGATGGAGACTGCGCAACCAGACAGGATTCTATGGC 926
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 656 AGTTTGCGGATAAGGCAAAGAGCACGATGGAGACTGCGCAACCAGACAGGATTCTATGGC 715
Query 927 AGAAGCTCTGCAAAAACTTCCTGAAAGGTTGA 958
||||||||||||||||||||||||||||||||
Sbjct 716 AGAAGCTCTGCAAAAACTTCCTGAAAGGTTGA 747
> Ahg899717 jgi|Araly1|899717|Al_scaffold_0004_367
Length=756
Score = 457 bits (247), Expect = 9e-128
Identities = 589/753 (78%), Gaps = 28/753 (4%)
Strand=Plus/Plus
Query 213 TGGTTATTGAGCAGAAGAAGAGGTTTGCTTTGTTT-TTAGCGACGTGTGATTCAGA-GTT 270
|||||| ||||| || ||||| |||||||||||| || || || | |||||| | |||
Sbjct 2 TGGTTAATGAGC--AA-AAGAGATTTGCTTTGTTTCTT-GCCACAAGCGATTCA-ACGTT 56
Query 271 CGTGAAGAAGACTTACGGTGGTTACTTCAATGTCTTCGTTTCAACTTTCGGCGAAGAAGG 330
||||||||| || || || || || ||||| || || ||||| ||||| || ||||| ||
Sbjct 57 CGTGAAGAAAACGTATGGAGGATATTTCAACGTGTTTGTTTCGACTTTTGGTGAAGATGG 116
Query 331 TGAGCAATGGGATCTATTCCGAGTCATCGACGGACAATTTCCCGACGAGAATGATTTAGA 390
||||||||||||||| || ||||| |||||||| | ||||| ||||| || ||| | ||
Sbjct 117 TGAGCAATGGGATCTGTTTCGAGTGATCGACGGTGAGTTTCCGGACGATAAGGATCTGGA 176
Query 391 CAAGTACGACGGTTTCGTTATCAGTGGTAGTCC-ACATGATGCTTTCGGAGACGCCGATT 449
|||||||||||||| ||||||||||| || || ||||||||||| || || | ||||
Sbjct 177 TAAGTACGACGGTTTTGTTATCAGTGGAAG-CCTTCATGATGCTTTTGGTGATGATGATT 235
Query 450 GGATTGTTAAGCTTTGCGAAGTTTGTCAGAAACTTGATC-ACATGAAGAAGAAAGTTCTC 508
|||| ||||||||||| |||| || |||||||| | ||||||||||||| |||||
Sbjct 236 GGATCGTTAAGCTTTGTTCTCTTTGCCAAAAACTTGA-CGACATGAAGAAGAAGGTTCTT 294
Query 509 GGCATCTGCTTCGGCCACCAGATAATTACTAGAGTTAAAGGTGGGAAGATAGGAAGAGC- 567
|| |||||||| |||||||||||| | | |||| | ||||| ||||| || ||||| ||
Sbjct 295 GGTATCTGCTTTGGCCACCAGATACTAAGTAGAATCAAAGGAGGGAAAATCGGAAGGGCG 354
Query 568 ACTCAAAGGTGCAGATATGGGACTTAGAAGCATAACCATAGCGAAAGACAATGAAAAACT 627
| | | |||| ||||||||||| ||||||||||| || | |||||| | ||||
Sbjct 355 AGT-ATAGGTTTGGATATGGGACTAAGAAGCATAACAATGGTTAAAGACGCGGTGAAACC 413
Query 628 ACGAGGTTACTTTGG-AGACGTTGAGGTCCCAGCATCTTTAGCTATTATAAAATGTCATC 686
| ||||||||||| || | || ||| | ||| |||| ||||||||||| ||||
Sbjct 414 GGGTGGTTACTTTGGAAG-C-CAGA-TTCCGA-AATCACTAGCCATTATAAAATGCCATC 469
Query 687 AGGATGAAGTGTTGGAACTTCCTGAGTCTGCTACACTACTTGCTTCTTCTGAGGTATGTA 746
| |||||||| || ||||| |||||||| || ||| | ||||||| ||| || || |
Sbjct 470 AAGATGAAGTTTTTGAACTCCCTGAGTCAGCCACATTGCTTGCTTATTCAGACAAATACA 529
Query 747 ACGTCGAGATGT-TCTCTAT-TGGAGATCATTTTTTCTGTATTCAAGGGCATCCAGAGTA 804
|||| ||||||| | || || |||| | || || | | || ||||| ||||| |||||
Sbjct 530 ACGTTGAGATGTGT-TC-ATATGGAAACCACTTCCTAGGCATCCAAGGTCATCCTGAGTA 587
Query 805 TAACAAAGAGATTCTGTTT-GAGATTGTGGACCGAGTCCTTAATATGAAGCTGATGGAGC 863
|||||||||||||| ||| ||||| | || || ||| | ||| ||||| |||||||||
Sbjct 588 CAACAAAGAGATTCT-TTTCGAGATCATTGATCGCGTCGTCAATTTGAAGTTGATGGAGC 646
Query 864 AAGAGTTTGCGGATAAGGCAAAGAGTA-CGATGGAGACTGCGCAACCAGA-CAGGATTCT 921
||||||||||||||||||| ||| | | ||||||| | |||| ||||||| | ||| |
Sbjct 647 AAGAGTTTGCGGATAAGGCCAAG-GCAACGATGGATAATGCGGAACCAGATC-GGAAGCA 704
Query 922 ATGGCAGAAGCTCTGCAAAAACTTCCTGAAAGG 954
|||||||| |||||||||||||| ||||||||
Sbjct 705 ATGGCAGACTCTCTGCAAAAACTTTCTGAAAGG 737
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41210873277
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5