BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G30560.1
Length=2395
Score E
Sequences producing significant alignments: (Bits) Value
Ahg328660 jgi|Araly1|328660|fgenesh1_pm.C_scaffold_7000887 3557 0.0
Ahg320206 jgi|Araly1|320206|fgenesh1_pm.C_scaffold_4000263 1805 0.0
> Ahg328660 jgi|Araly1|328660|fgenesh1_pm.C_scaffold_7000887
Length=2202
Score = 3557 bits (1926), Expect = 0.0
Identities = 2111/2203 (96%), Gaps = 2/2203 (0%)
Strand=Plus/Plus
Query 54 ATGTTAGACTGTGGCAAAAAAGCAGTCAAATCACAAGTAATCAGTGGCCGTCTCGAGAAG 113
||||||||||||| |||||||||||| |||||||||||||||||||||| |||||||||
Sbjct 1 ATGTTAGACTGTGCCAAAAAAGCAGTGAAATCACAAGTAATCAGTGGCCATCTCGAGAAA 60
Query 114 TTTGTAAGGTTGGATAGTATGGATTCTAGGTACTCGCAGACTTCTGATACTGGTCTAAAC 173
||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||
Sbjct 61 TTTGTAAGGTTGGATAGTATGGATTCTAGGTACTCTCAGACTTCTGATGCTGGTCTAAAC 120
Query 174 AGATGCACTCTCAATTTACAAGGACCAACACGTGGTGGTGGTGCTCAGGGAAACAATGTA 233
||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||
Sbjct 121 AGATGCACTCTCAATCTACAAGGACCAACACGTGGTGGTGGTGCTCAGGGCAACAATGTT 180
Query 234 TCTTCTGGTTCCTTTAAGAAAGGGTTTAGAAAAGGTTCTAAAGGTCTTTGGTCTATAGGA 293
||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||
Sbjct 181 TCTTCTGGTTCCTTTAAGAAAGGATTTAGAAAAGGCTCTAAAGGTCTTTGGTCTATAGGT 240
Query 294 AGATCAATTGGTTTAGGGGTTTCACGAGCAGTTTTTCCTGAAGATCTTAAAGTATCAGAG 353
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 AGATCAATTGGTTTGGGGGTTTCACGAGCAGTTTTTCCTGAAGATCTTAAAGTATCAGAG 300
Query 354 AAGAAGATTTTTGATCCACAGGACAAGTTTCTTTTGCTCTGTAACAAACTGTTTGTTACT 413
||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 301 AAGAAGATTTTTGATCCACAGGACAAGTTTCTTTTGCTCTGCAACAAGCTGTTTGTTACT 360
Query 414 TCTTGCATTCTCGCTGTGTCTGTGGATCCGCTCTTCTTGTATCTTCCGTTTGTTAAGGAT 473
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 361 TCTTGCATTCTCGCTGTGTCTGTGGATCCGCTCTTCTTGTATCTTCCTTTTGTTAAGGAT 420
Query 474 AATGAGAAATGTATCGGTATAGACCGGAAG-TTGGCTATTATAGCAACAACGCTGCGGAC 532
||||||||||||||||||||||||||| || |||||||| ||||||||||| ||||||||
Sbjct 421 AATGAGAAATGTATCGGTATAGACCGG-AGATTGGCTATCATAGCAACAACACTGCGGAC 479
Query 533 AGTAATTGATGCGTTTTATCTTTTTCACATGGCTCTTCGGTTTAGAACAGCTTTTGTCGC 592
||| || |||||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct 480 AGTGATCGATGCGTTTTATCTTTTTCATATGGCTCTTCGGTTTAGGACAGCTTTTGTCGC 539
Query 593 CCCTTCTTCTCGGGTTTTTGGTCGAGGCGAACTTGTGATTGACCCTGCACAGATAGCAAA 652
|||||||||| |||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct 540 CCCTTCTTCTAGGGTTTTTGGGCGAGGCGAACTTGTGATCGACCCTGCACAGATAGCAAA 599
Query 653 ACGTTATTTGCAGCAGTATTTCATCATTGACTTTCTCTCTGTGCTTCCACTTCCACAGAT 712
||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 600 ACGGTATTTGCAGCAGTATTTCATCATTGACTTTCTCTCTGTGCTTCCGCTTCCACAGAT 659
Query 713 TGTAGTTTGGAGATTTCTTTACATCTCTAAAGGTGCAAGTGTGCTAGCAACAAAGCGGGC 772
||||||||||||||||||| ||||||| ||||||||||||||| ||||||||||||||
Sbjct 660 TGTAGTTTGGAGATTTCTTGGCATCTCTGGAGGTGCAAGTGTGCTGGCAACAAAGCGGGC 719
Query 773 ATTGCGATCTATCATTTTAGTTCAATATATTCCAAGATTCATTCGGTTGTATCCTTTGAG 832
|||||||| ||||||||| ||||||||||||| || ||||||||| | |||||||||||
Sbjct 720 GTTGCGATCGATCATTTTACTTCAATATATTCCGAGGTTCATTCGGCTATATCCTTTGAG 779
Query 833 CTCAGAGTTAAAGAGAACAGCTGGTGTTTTTGCTGAAACTGCTTGGGCTGGTGCAGCTTA 892
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 780 CTCAGAGTTAAAGAGAACAGCTGGTGTTTTTGCTGAAACTGCTTGGGCTGGTGCAGCTTA 839
Query 893 TTACTTGCTACTCTACATGCTCGCAAGCCATATTGTTGGGGCTATATGGTACTTATTGGC 952
||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||
Sbjct 840 TTACTTGCTACTCTACATGCTCGCAAGTCATATTGTTGGGGCTTTATGGTACTTATTGGC 899
Query 953 CTTGGAACGTTATAATGGATGCTGGACCAAGGTTTGCAGTAATAGCAGCTTGGACTGTCA 1012
||| ||||| |||||||||||||||| ||||| |||| |||||| ||| ||||||||||
Sbjct 900 CTTAGAACGCTATAATGGATGCTGGAGCAAGGCTTGCGGTAATAATAGCCTGGACTGTCA 959
Query 1013 CAGAAACTTCCTGTTTTGTGGTAATGAAAAAATGGATGGTTATGCAGCTTGGACTACCAT 1072
||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||
Sbjct 960 AAGAAACTTCCTGTTTTGTGGTAATGAAAATATGGATGGTTATGCAGCTTGGTCTACCAT 1019
Query 1073 CAAAGATTCTGTTCTGCAATTAAATTGCCCAGTTAATACAACCGATAATCCTCCTTTTGA 1132
||||||||||||||| ||| |||||| ||||||||||||||||||||||||||||||||
Sbjct 1020 CAAAGATTCTGTTCTTCAAACAAATTGTCCAGTTAATACAACCGATAATCCTCCTTTTGA 1079
Query 1133 TTTTGGGATCTACTTAAGAGCCTTGTCCTCTGGCATTGTCTCATCTAAGAGCTTTGTCTC 1192
||| || ||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1080 TTTCGGAATCTACTTAAGAGCCCTGTCCTCTGGCATTGTCTCATCTAAGAGCTTTGTCTC 1139
Query 1193 TAAGTACTTCTTCTGTTTATGGTGGGGACTTCAGAATCTCAGCACTCTTGGTCAAGGGCT 1252
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1140 TAAGTACTTCTTCTGTTTATGGTGGGGACTTCAGAATCTCAGCACTCTTGGTCAAGGGCT 1199
Query 1253 TGAAACCAGCACATACCCTGGAGAAGTTATATTCTCCATAGCACTTGCCATTGCTGGACT 1312
| ||||||| |||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 1200 TCAAACCAGTACATACCCTGGAGAGGTTATATTCTCCATAGCACTTGCTATTGCTGGACT 1259
Query 1313 TCTTCTCTTTGCTCTTCTTATTGGAAACATGCAGACTTATCTTCAATCCCTTACAATCCG 1372
|||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 1260 TCTTCTCTTTGCTCTTCTTATTGGAAACATGCAGACTTATCTTCAATCCCTTACTATACG 1319
Query 1373 GCTTGAAGAAATGAGAGTGAAAAGACGTGATTCAGAACAGTGGATGCATCATCGAATGCT 1432
||||||||||||||||||||||||||| || |||||||||||||||| ||||||||||||
Sbjct 1320 GCTTGAAGAAATGAGAGTGAAAAGACGCGACTCAGAACAGTGGATGCGTCATCGAATGCT 1379
Query 1433 TCCACCGGAACTGCGAGAACGAGTCAGACGATATGACCAGTACAAATGGTTGGAGACACG 1492
|||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1380 TCCACCAGAACTGCGGGAACGAGTCAGACGATATGACCAGTACAAATGGTTGGAGACACG 1439
Query 1493 CGGAGTTGATGAAGAGAATTTGGTTCAGAACCTCCCAAAGGATCTGAGAAGAGATATCAA 1552
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1440 CGGAGTTGATGAAGAGAACTTGGTTCAGAACCTCCCAAAGGATCTGAGAAGAGATATCAA 1499
Query 1553 ACGCCATCTCTGTCTGGCTTTGGTTCGGAGGGTTCCATTGTTTGAGAATATGGATGAGAG 1612
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1500 ACGCCATCTCTGTCTGGCTTTGGTTCGGAGGGTTCCATTGTTTGAGAATATGGATGAGAG 1559
Query 1613 GCTGCTCGATGCAATCTGTGAGCGGTTGAAGCCGTGTCTGTACACAGAGAGCTCTTATTT 1672
||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1560 GCTGCTCGATGCAATTTGTGAGCGGTTGAAGCCGTGTCTGTACACGGAGAGCTCTTATTT 1619
Query 1673 GGTTCGGGAAGGCGACCCGGTTAACGAGATGCTCTTCATTATCCGTGGTCGGCTTGAGAG 1732
|||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1620 GGTTCGGGAAGGAGACCCGGTTAATGAGATGCTCTTCATTATCCGTGGTCGGCTTGAGAG 1679
Query 1733 TGTGACCACCGATGGCGGAAGAAGCGGTTTCTTCAACCGCAGTTTGCTTAAAGAAGGAGA 1792
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1680 TGTGACCACCGATGGCGGAAGAAGTGGTTTCTTCAACCGCAGTTTGCTTAAAGAAGGAGA 1739
Query 1793 TTTCTGTGGGGAAGAGCTTTTGACATGGGCACTTGATCCCAAATCTGGTTCCAACCTACC 1852
||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 1740 TTTCTGTGGGGAAGAGCTTTTGACATGGGCACTTGATCCCAAATCCGGATCCAACCTACC 1799
Query 1853 ATCCTCTACCAGAACCGCAAAGGCTCTAACTGAAGTAGAGGCTTTTGCTTTGATAGCAGA 1912
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1800 ATCCTCTACCAGAACCGCAAAGGCTCTAACTGAAGTAGAGGCTTTTGCTTTGATAGCCGA 1859
Query 1913 TGAGCTCAAATTTGTGGCTAGCCAGTTCAGAAGACTACACAGCAGGCAAGTTCAACACAC 1972
|||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1860 TGAGCTTAAATTTGTGGCTAGCCAGTTCAGGAGACTACACAGCAGGCAAGTTCAACACAC 1919
Query 1973 ATTCAGATTCTACTCGCAACAATGGAGAACTTGGGCTGCTATCTTCATACAAGCCGCGTG 2032
||||||||||||||| ||||||||||| |||||||||||||| ||||||||||| || ||
Sbjct 1920 ATTCAGATTCTACTCACAACAATGGAGGACTTGGGCTGCTATTTTCATACAAGCGGCATG 1979
Query 2033 GCGACGATACGTgaagaagaagaaacttgagcaactcaggaaagaagaagaagaaggaga 2092
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1980 GCGACGATATGTGAAGAAGAAGAAACTTGAGCAACTCAGGAAAGAAGAAGAAGAAGGAGA 2039
Query 2093 agGATCAGTTACTAGCATCAGAGCGACGTTCCTGGCTTCAAAGTTTGCTGCAAATGCACT 2152
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2040 AGGATCAGTTACTAGCATCAGAGCGACGTTCCTGGCTTCAAAGTTTGCTGCAAATGCACT 2099
Query 2153 TCGTAAAGTTCACAAGAACCGTATTGAAGCAAAGTCTACTATAGAACTTGTGAAATATCA 2212
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 2100 TCGTAAAGTTCACAAGAACCGTATTGAAGCAAAGTCTACTAAAGAACTTGTGAAATATCA 2159
Query 2213 GAAGCCTTCAGAACCTGATTTCTCTGCTGATGATACTAGTTGA 2255
|||||||||||||||||||||||||||||||||| || |||||
Sbjct 2160 GAAGCCTTCAGAACCTGATTTCTCTGCTGATGATCCTTGTTGA 2202
> Ahg320206 jgi|Araly1|320206|fgenesh1_pm.C_scaffold_4000263
Length=2241
Score = 1805 bits (977), Expect = 0.0
Identities = 1710/2061 (83%), Gaps = 61/2061 (3%)
Strand=Plus/Plus
Query 63 TGTGGCAAAAAAGCAGTCAAATCACAAGTAATCAGTGGCCGTCTCGAGAAGTTTGTAAGG 122
|||||| ||||| ||||||||| ||||| |||||||||| | |||||||||||| |||
Sbjct 13 TGTGGCCCAAAAGGAGTCAAATCTCAAGTCATCAGTGGCCAACGCGAGAAGTTTGTGAGG 72
Query 123 TTGGATAGTATGGATTCTAGGTACTCGCAGACTTCTGATACTGGTCTAAACAGATGCAC- 181
|| ||||||||||| || |||||||| || | ||| || || |||||||||| ||||||
Sbjct 73 TTAGATAGTATGGACTCGAGGTACTCCCAAAGTTCCGAAACGGGTCTAAACAAATGCACA 132
Query 182 TCTCAATTTACAAGGACCAACACGTGGTGGTGGTGCTCAGGGAAACAATGTATCTTCTGG 241
| | ||| |||||||||| | | | || | | |||| |||| ||| ||| |||||
Sbjct 133 T-TGAATATACAAGGACCTA-A--TCGT--T-ATACTCAAGGAAGCAAAACATCATCTGG 185
Query 242 TTCCTTTAAGAAAGGGTTTAGAAAAGGTTCTA-AAGGTCTTTGGTCTATAGGAAGATCAA 300
|| ||||||||||| ||||||||||| || | | || |||||||||||||| ||||| |
Sbjct 186 ATCTTTTAAGAAAGGTTTTAGAAAAGGATC-AGAGGGACTTTGGTCTATAGGTAGATCGA 244
Query 301 TTGGTTTAGGGGTTTCACGAGCAGTTTTTCCTGAAGATCTTAAAGTATCAGAGAAGAAGA 360
|||| | || ||||| || || || ||||| ||||||||| |||| |||||||||||||
Sbjct 245 TTGGGCTCGGTGTTTCGCGTGCTGTGTTTCCAGAAGATCTTGAAGTCTCAGAGAAGAAGA 304
Query 361 TTTTTGATCCACAGGACAAGTTTCTTTTGCTCTGTAACAAACTGTTT-GTTACTTCTTGC 419
| ||||||||||| |||||||||||||| ||||| ||| || | ||| || |||| ||
Sbjct 305 TATTTGATCCACAAGACAAGTTTCTTTTACTCTGCAAC-AAGTTTTTCGTCGCTTCGTGT 363
Query 420 ATTCTCGCTGTGTCTGTGGATCCGCTCTTCTTGTATCTTCCGTTTGTTAAGGATAATGAG 479
|| ||||| || || |||||||| ||||||||||||||||||||| |||| ||||| | |
Sbjct 364 ATACTCGCAGTATCCGTGGATCCACTCTTCTTGTATCTTCCGTTTATTAATGATAAAGCG 423
Query 480 AAATGTATCGGTATAGACCGGAAGTTGGCTATTATAGCAACAACGCTGCGGACAGTAATT 539
|||||| | |||||||| ||||| |||| || |||| ||| || | ||||||| ||
Sbjct 424 AAATGTGTTGGTATAGATCGGAAACTGGCAATCATAGTAACTACAATAAGGACAGTTATA 483
Query 540 GATGCGTTTTATCTTTTTCACATGGCTCTTCGGTTTAGAACAGCTTTTGTCGC-CCCTTC 598
||| |||||||||| ||||| |||||||| |||||||||||||||| ||| || ||| ||
Sbjct 484 GATTCGTTTTATCTCTTTCATATGGCTCTACGGTTTAGAACAGCTTATGTTGCTCCC-TC 542
Query 599 TTCTCGGGTTTTTGGTCGAGGCGAACTTGTGATTGACCCTGCACAGATAGCAAAACGTTA 658
|| ||||||||||||||||| || ||||| || ||||||||||||||||| || || ||
Sbjct 543 GTCACGGGTTTTTGGTCGAGGAGAGCTTGTTATAGACCCTGCACAGATAGCTAAGCGGTA 602
Query 659 TTTGCAGCAGTATTTCATCATTGACTTT-CTCTCTGTGCTTCCACTTCCACAGATTGTAG 717
| |||| ||||||||||||||||| ||| || || || ||||| ||||||||||| |||
Sbjct 603 TCTGCAACAGTATTTCATCATTGA-TTTACTTTCCGTTCTTCCGGTTCCACAGATTATAG 661
Query 718 TTTGGAGATT--TCTTTACATCTCTAAAGGTGC-AAGTGTGCTAGCAACAAAGCGGGCA- 773
|||||||||| ||| ||| | || | ||||| || |||||| || ||||| | |||
Sbjct 662 TTTGGAGATTCCTCTATAC-T-TCGAGGGGTGCGAA-TGTGCTGGCGACAAAACAAGCAC 718
Query 774 TTGCGATCTATCATTTTAGTTCAATATATTCCAAG-ATTCATTCGGTTGTATCCTTTGAG 832
|| ||| |||| | ||||||||||||| || | ||| |||| |||||||||| ||
Sbjct 719 TT-AGATATATCGTGCTAGTTCAATATATCCCGCGTTTTC-TTCGAATGTATCCTTTAAG 776
Query 833 CTCAG-AGTTAAAGAGAACAGCTGGTGTTTTTGCTGAAACTGCTTGGGCTGGTGCAGCTT 891
|||| | | ||| |||||||| || || || ||||||||||||||||| |||||||| |
Sbjct 777 TTCAGAACTGAAA-AGAACAGCCGGGGTCTTCGCTGAAACTGCTTGGGCGGGTGCAGCCT 835
Query 892 ATTACTTGCTACTCTACATGCTCGCAAGCCATATTGTTGGGGCTATATGGTACTT-ATTG 950
| |||||| | || |||||||||||||| ||||||||||||||| | ||||| || ||
Sbjct 836 ACTACTTGTTGCTTTACATGCTCGCAAGTCATATTGTTGGGGCTTTGTGGTATTTGCTT- 894
Query 951 GCCTTGGAACGTTATAATGGA-TGCTGGACCAAGGTTTGCAGTAATAGCAGCTTGGACTG 1009
||||| ||||| ||||| || ||||||| | || ||||| |||| | | | ||||
Sbjct 895 GCCTTAGAACGCAATAAT-GACTGCTGGAGTAGGGCTTGCAACAATA--A-CCAGAACTG 950
Query 1010 TCA-CAGAAACTTCCTGTTTTGTGGTAATGAAAAAATGGATGGTTATGCAGC-TTGGACT 1067
| | |||||||||| ||||||||||||| |||| ||| | |||||||| || | ||||
Sbjct 951 T-ACCAGAAACTTCTTGTTTTGTGGTAACCAAAATATGCAAGGTTATGCTGCGTGGGAC- 1008
Query 1068 ACCATCAAAGATTCTGT-TCTGCAATTAAATTGCCCAGTTAATACAACC---GAT--A-A 1120
| || |||| ||| || ||| || |||| ||||| || ||| || ||| | |
Sbjct 1009 AGTATTAAAGTTTC-GTATCTTCAGCTAAAGTGCCCTGTCAATGTGCCCGAGGATGAAGA 1067
Query 1121 TCCTCCTTTTGATTTTGGGATCTACTTAAGAGCCTTGTCCTCTGGCATTGTCTCATCTAA 1180
||||| ||||||||||| ||||||||||||||| | ||||||||||| ||||| ||||
Sbjct 1068 ACCTCCCTTTGATTTTGGAATCTACTTAAGAGCCCTCTCCTCTGGCATCGTCTCGTCTAG 1127
Query 1181 GAGCTTTGTCTCTAAGTACTTCTTCTGTTTATGGTGGGGACTTCAGAATCTCAGCACTCT 1240
|| ||||||||||||||||||||||||||| ||||||||||| |||||||| || || ||
Sbjct 1128 GAACTTTGTCTCTAAGTACTTCTTCTGTTTGTGGTGGGGACTACAGAATCTTAGTACACT 1187
Query 1241 TGGTCAAGGGCTTGAAACCAGCACATACCCTGGAGAAGTTATATTCTCCATAGCACTTGC 1300
|||||||||||||||||||||||||||||||||||| ||||||||||| ||| |||||||
Sbjct 1188 TGGTCAAGGGCTTGAAACCAGCACATACCCTGGAGAGGTTATATTCTCTATAACACTTGC 1247
Query 1301 CATTGCTGGACTTCTTCTCTTTGCTCTTCTTATTGGAAACATGCAGACTTATCTTCAATC 1360
|||||||||||||| |||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 1248 TATTGCTGGACTTCTACTCTTTGCACTTCTCATTGGAAACATGCAGACTTATCTTCAATC 1307
Query 1361 CCTTACAATCCGGCTT-GAAGAAATGAGAGTGAAAAGACGTGATTCAGAACAGTGGATGC 1419
||||| |||||| || ||||||||| |||| ||||||||||| ||||||||||||||||
Sbjct 1308 GCTTACCATCCGG-TTAGAAGAAATGCGAGTCAAAAGACGTGACTCAGAACAGTGGATGC 1366
Query 1420 ATCATCGAATGCTTCCACCGGAACTGCGAGAACGAGTCAGACGATATGACCAGTACAAAT 1479
|||||||||||||||||| |||||||| ||||| || ||||||||||| |||||||| |
Sbjct 1367 GTCATCGAATGCTTCCACCAGAACTGCGGGAACGGGTTAGACGATATGATCAGTACAAGT 1426
Query 1480 GGTTGGAGACACGCGGAGTTGATGAAGAGAAT-TTGGTTCAGAACCTCCCAAAGGATCTG 1538
|||||||||| || || ||||||||||||||| ||| ||||||||||||||||||||||
Sbjct 1427 GGTTGGAGACGCGTGGCGTTGATGAAGAGAATCTTG-TTCAGAACCTCCCAAAGGATCTT 1485
Query 1539 AGAAGAGATATCAAACGCCATCTCTGTCTGGCTTTGGTTCGGAGGGTTCCATTGTTTGAG 1598
||||||||||||||||| ||||||||||| || || || || || |||||||||||||||
Sbjct 1486 AGAAGAGATATCAAACGTCATCTCTGTCTCGCCTTAGTCCGAAGAGTTCCATTGTTTGAG 1545
Query 1599 AATATGGATGAGAGGCTGCTCGATGCAATCTGTGAGCGG-TTGAAGCCGTGTCTGTACAC 1657
|||||||||||||||||||| ||||||||||||||| || || ||||| ||||||| |||
Sbjct 1546 AATATGGATGAGAGGCTGCTAGATGCAATCTGTGAGAGGCTT-AAGCCATGTCTGTTCAC 1604
Query 1658 AGAGA-GCTCTTATTTGGTTCGGGAAGGCGACCCGGTTAACGAGATGCTCTTCATTATCC 1716
|||| | ||||| |||||||| || || || || || || || ||||||||||| || |
Sbjct 1605 TGAGAAG-TCTTACTTGGTTCGTGAGGGAGATCCAGTCAATGAAATGCTCTTCATAATTC 1663
Query 1717 GTGGTCGGCTTGAGAGTGTGACCACCGATGGCGGAAGAAGCGGTTTCTTCAACCGCAGTT 1776
||||| |||| |||||||| ||||| ||||| || |||||||| |||| |||||| ||||
Sbjct 1664 GTGGTAGGCTCGAGAGTGTAACCACTGATGGTGGGAGAAGCGGATTCTACAACCGGAGTT 1723
Query 1777 TGCTTAAAGAAGGAGATTTCTGTGGGGAAGAGCTTTTGACATGGGCACTTGATCCCAAAT 1836
|||||||||||||||||||||| || || ||||||||||||||||| |||||||||||||
Sbjct 1724 TGCTTAAAGAAGGAGATTTCTGCGGTGACGAGCTTTTGACATGGGCGCTTGATCCCAAAT 1783
Query 1837 CTGGTTCCAACCTACCATCCTCTACCAGAACCGCAAAGGCTCT-AACTGAAGTAGAGGCT 1895
| ||||| ||||| || ||||| || ||||||| ||||| || ||| |||||||| |||
Sbjct 1784 CCGGTTCTAACCTCCCGTCCTCAACAAGAACCGTGAAGGC-CTTAACAGAAGTAGAAGCT 1842
Query 1896 TTTGCTTTGATAGCAGATGAGCTCAAATTTGTGGCTAGCCAGTTCAGAAGACTACACAGC 1955
|| ||| ||||||| |||||||| ||||| ||||| ||||||||||||||||| || |||
Sbjct 1843 TTCGCTCTGATAGCCGATGAGCTGAAATTCGTGGCGAGCCAGTTCAGAAGACTCCATAGC 1902
Query 1956 AGGCAAGTTCAACACACATTCAGATTCTACTCGCAACAATGGAGAACTTGGGCTGCTAT- 2014
|| ||||| |||||||| ||||||||||| || || |||||||| |||||||| ||| |
Sbjct 1903 AGACAAGTACAACACACGTTCAGATTCTATTCACAGCAATGGAGGACTTGGGCCGCT-TG 1961
Query 2015 CTTCATACAAGCCGCGTGGCGACGATACGTgaagaagaagaaacttg-agcaactcagga 2073
|||||| |||||||| ||| |||| ||| | |||| ||||||| ||| ||||||| || |
Sbjct 1962 CTTCATGCAAGCCGCATGGAGACGGTACATAAAGAGGAAGAAA-TTGGAGCAACTTAGAA 2020
Query 2074 aagaagaagaagaaggagaag 2094
||||||| ||||||| |||||
Sbjct 2021 AAGAAGAGGAAGAAGAAGAAG 2041
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 90235790405
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5