BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G30570.1
Length=1025
Score E
Sequences producing significant alignments: (Bits) Value
Ahg944932 jgi|Araly1|944932|scaffold_701161.1 1050 0.0
> Ahg944932 jgi|Araly1|944932|scaffold_701161.1
Length=961
Score = 1050 bits (568), Expect = 0.0
Identities = 650/690 (94%), Gaps = 4/690 (1%)
Strand=Plus/Plus
Query 322 ACTAACCGTGCTGAAGCATCAATCATGGTGACCGAGGTTGATGATCCTTCTAAGTATGGT 381
|||||| | |||||||| ||||| ||||||||| ||||||||||||||||||||||||||
Sbjct 267 ACTAACTGCGCTGAAGCTTCAATTATGGTGACCAAGGTTGATGATCCTTCTAAGTATGGT 326
Query 382 GTGGTGGTTACAGAGGAAGGTACAGCGAGAGTTGAAAGTTTTGTCGAGAAACCGAAACAT 441
||||||||||| || ||||||||||||||||||||||||||||| ||||||||| |||||
Sbjct 327 GTGGTGGTTACGGACGAAGGTACAGCGAGAGTTGAAAGTTTTGTAGAGAAACCGGAACAT 386
Query 442 TTTGTGGGGAACAAGATCAACGCTGGGATATACCTCTTGAGCCCATCTGTTCTTGACAGG 501
||||||||||||||||| |||||||||||||||||||||| |||||||||||| ||||||
Sbjct 387 TTTGTGGGGAACAAGATTAACGCTGGGATATACCTCTTGAACCCATCTGTTCTCGACAGG 446
Query 502 ATTGAGCTGAGAAGGACTTCGATAGAGAAAGAGATATTCCCTAAGATAGCTTCAGAGAAG 561
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 447 ATTGAGCTGAGACGGACTTCGATAGAGAAAGAGATATTCCCTAAGATAGCTTCAGAGAAG 506
Query 562 AAGCTTTACGCGATGGTACTACCTGGTTTTTGGATGGACATTGGTCAACCGAAAGATTAC 621
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 507 AAGCTTTACGCGATGGTACTACCTGGTTTTTGGATGGACATTGGTCAACCGAAAGATTAC 566
Query 622 ATAACCGGGCAAAGAATGTACCTTAACTCTCTAAGAGAGAAAACTCCGCAAGAACTGGCC 681
||||| ||||||||||||||||||||||| |||||||||||| |||||||||| ||||
Sbjct 567 ATAACTGGGCAAAGAATGTACCTTAACTCCCTAAGAGAGAAAGCTCCGCAAGATTTGGCT 626
Query 682 ACAGGGGATAACATAATCGGGAATGTTCTCGTGCACGAA-AGTGCGGTTATAGGAGAAGG 740
||||||||||||||| ||||||||||||| ||| || || |||||||||||||||||||
Sbjct 627 ACAGGGGATAACATATTCGGGAATGTTCTTGTGGAC-AAGAGTGCGGTTATAGGAGAAGC 685
Query 741 TTGCTTGATAGGACCTGATGTGGTGATTGGTCCGGGATGTGTGATTGATTCAGGTGTAAG 800
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 686 TTGCTTGATTGGACCTGATGTGGTGATTGGTCCGGGATGTGTGATTGATTCAGGTGTAAG 745
Query 801 ATTGTTTGGTTGTACTGTAATGCGCGGTGTGTGGATCAAGGAACATGCGTGTATCTCTAA 860
|||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||
Sbjct 746 ATTGTTTGGTTGTACTGTAATGCGCGGTGTTTGGATCAAGGAACATGCGAGTATCTCTAA 805
Query 861 TAGTATCGTGGGATGGGATTCAACCGTTGG-AAGGTGGGCTCGAGTTTTTAATATAACGG 919
|||||| |||||||||||||| || ||||| || |||||||| ||| |||| |||||||
Sbjct 806 TAGTATTGTGGGATGGGATTCGACTGTTGGTAAA-TGGGCTCGGGTTGTTAACATAACGG 864
Query 920 TTCTTGGCAAAGATGTTAACGTCGCCGATGCAGAGGTTTACAACAGTGGGGTTGTTATCG 979
||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||
Sbjct 865 TTCTTGGCAAAGATGTTCACGTCGCCGATGCAGAGGTTTACAACAGCGGGGTTGTTATCG 924
Query 980 AAGAGCAAGGTCTGTGAAACCAGAGCCTAG 1009
||||||||||||||||||||| ||||||||
Sbjct 925 AAGAGCAAGGTCTGTGAAACCCGAGCCTAG 954
Score = 388 bits (210), Expect = 3e-107
Identities = 220/225 (98%), Gaps = 0/225 (0%)
Strand=Plus/Plus
Query 52 ATTGAAGCTCTAAAAGGTGCTGGAGTGACTGAAGTTGTATTAGCTATCAATCACCAACAA 111
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 42 ATTGAAGCTCTAAAAGCTGCTGGAGTGACTGAAGTTGTATTAGCTATCAATCACCAACAA 101
Query 112 CCAGAGGTCATGTTGAACTTTGTGAAAGAATATGAGAAGAAGCTAGAGATTAAGATTACA 171
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 102 CCAGAGGTCATGTTGAATTTTGTGAAAGAATATGAGAAGAAGCTAGAGATTAAGATTACA 161
Query 172 TTTTCCCAAGAAACTGAACCGCTTGGAACAGCAGGGCCTCTCGCGCTGGCTCGGGATAAG 231
|||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 162 TTTTCCCAGGAAACTGAACCGCTTGGGACAGCAGGGCCTCTCGCGCTGGCTCGGGATAAG 221
Query 232 CTGGTCGATGAATCAGGCCAACCCTTTTTTGTACTAAACAGCGAT 276
||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 222 CTGGTCGATGAATCAGGCCAACCCTTTTTTGTACTTAACAGCGAT 266
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38122917000
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5