BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G30580.1
Length=1291
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491693 jgi|Araly1|491693|fgenesh2_kg.7__1126__AT4G30580.1 1842 0.0
> Ahg491693 jgi|Araly1|491693|fgenesh2_kg.7__1126__AT4G30580.1
Length=1268
Score = 1842 bits (997), Expect = 0.0
Identities = 1148/1220 (94%), Gaps = 13/1220 (1%)
Strand=Plus/Plus
Query 1 TGAGCAAATCCCACGCATGTTTTTGCTCCAGATTCCGCCATGGATGTCGCTTCTGCTCGG 60
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TGAGCAAATCTCACGCATGTTTTTGCTCCAGATTCCGCCATGGATGTCGCTTCTGCTCGG 60
Query 61 AGCATCTCTTCACATCCTTCATATTATGGAAAACCGATTTGTTCATCACAATCATCGTTG 120
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||
Sbjct 61 AGCATCTCTTCACATCCTTCATATTATGGAAAACCGATTTGTTCATCGCAATCATCGCTG 120
Query 121 ATTCGGATTTCGAGGGATAAAGTTTGTTGCTTTGGTCGCATTTCTAATGGCAT-GACGAG 179
||||||||||||||||||||||| ||||| |||||||| ||||||||||||| | ||||
Sbjct 121 ATTCGGATTTCGAGGGATAAAGTGTGTTGTTTTGGTCGTATTTCTAATGGCACAG-CGAG 179
Query 180 CTTTACTACTTCCCTTCATGCTGTCCCGAGTGAAAAATTTATGGGCGAAACAAGACGTAC 239
||||| |||||||||||||||||||||||||| |||||||||||||||||||||| ||||
Sbjct 180 CTTTAGTACTTCCCTTCATGCTGTCCCGAGTGGAAAATTTATGGGCGAAACAAGAAGTAC 239
Query 240 TGGCATTCAATGGTCTAACCGCTCTTTAAGACATGATCCTTACAGATTTCTTGATAAGAA 299
|||| ||||||||| || ||||||||||||| |||||||||||||||| |||||||||
Sbjct 240 TGGCGTTCAATGGTGTAGCCGCTCTTTAAGATGGGATCCTTACAGATTTCATGATAAGAA 299
Query 300 ATCAC-CTAGATCAAGTCAATTGGCAAGAGATATCACTGTGAGAGCAGATCTTTCAGGAG 358
||||| | |||| |||| ||||||||||| |||||||||||||| |||||||||||||||
Sbjct 300 ATCACTC-AGATTAAGTGAATTGGCAAGAAATATCACTGTGAGATCAGATCTTTCAGGAG 358
Query 359 CTGCAACCCCTGACTCTTCTTTTCCTGAACCAGAGATTAAGTTGAGCTCAAGACTCAGAG 418
|||||||||||| ||||||| ||| ||||||||||||||||||||||||||||||||||
Sbjct 359 TTGCAACCCCTGAATCTTCTTATCCGGAACCAGAGATTAAGTTGAGCTCAAGACTCAGAG 418
Query 419 GGATATTCTTTTGTGTTGTTGCTGGCATTTCGGCTACTTTTCTCATTGTCCTGATGATTA 478
|||||| ||||||||||||||||| |||||| || ||||||||||||||||||||||||
Sbjct 419 GGATATGCTTTTGTGTTGTTGCTGCCATTTCTGCCACTTTTCTCATTGTCCTGATGATTG 478
Query 479 TTGGGCATCCGTTCGTCCTTCTCTTCGATCCCTATAGGAGAAAATTCCACCACTTCATTG 538
||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 479 TTGGGCATCCGTTCGTCCTTCTCTTCGATCCCTATAGGAGAAAATTCCATCACTTTATTG 538
Query 539 CTAAACTTTGGGCTTCCATAAGCATTTATCCGTTTTACAAAATCAACATCGAGGGTTTGG 598
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 539 CTAAACTTTGGGCTTCCATAAGCATTTATCCGTTTTACAAAATCAACATCGAGGGTTTGG 598
Query 599 AGAATCTGCCATCATCAGACACTCCTGCTGTATATGTTTCAAACCACCAAAGTTTTCTGG 658
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 599 AGAATCTGCCGTCATCAGACACTCCTGCTGTATATGTTTCAAACCACCAAAGTTTTCTGG 658
Query 659 ATATCTACACACTTCTTAGTCTTGGAAAAAGCTTTAAGTTCATCAGCAAGACAGGGATAT 718
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 659 ATATCTACACACTTCTCAGTCTTGGAAAAAGCTTTAAGTTCATCAGCAAGACAGGGATAT 718
Query 719 TCGTAATTCCCATCATCGGTTGGGCCATGTCCATGATGGGTGTCGTTCCCTTGAAG-CGG 777
|||| |||||||| |||||||||||||||| ||||||||||||||||||||| ||| |||
Sbjct 719 TCGTTATTCCCATTATCGGTTGGGCCATGTACATGATGGGTGTCGTTCCCTT-AAGGCGG 777
Query 778 ATGGACCCAAGAAGCCAAGTGGATTGCTTAAAACGCTGCATGGAACTTTTAAAGAAGGGA 837
|||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 778 ATGGACCCAAGAAGTCAAGTGGATTGCTTAAAACGCTGCATGGAACTCTTAAAGAAGGGA 837
Query 838 GCATCTGTGTTTTTCTTCCCAGAAGGAACACGGAGTAAGGATGGTCGGTTAGGTTCTTTC 897
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 838 GCATCTGTGTTTTTCTTCCCAGAAGGAACACGGAGTAAGGATGGTCGGTTAGGTCCTTTC 897
Query 898 AAGAAAGGCGCATTTACAGTGGCTGCGAAGACCGGAGTTGCAGTAGTTCCAATAACGCTA 957
||||||||||||||||| |||||||| ||||| |||||||||||||||||||||||||||
Sbjct 898 AAGAAAGGCGCATTTACGGTGGCTGCTAAGACGGGAGTTGCAGTAGTTCCAATAACGCTA 957
Query 958 ATGGGAACAGGCAAAATCATGCCAACGGGTAGTGAAGGTATACTGAACCATGGGAATGTG 1017
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 958 ATGGGAACAGGCAAAATCATGCCAACAGGTAGTGAAGGTATACTGAACCATGGGAATGTG 1017
Query 1018 AGAGTTATCATCCATAAACCAATACATGGAAGCAAAGCGGATGTTCTTTGCAACGAGGCC 1077
||||| ||||||||||| |||||||| |||||||||||||||| |||||||||||| ||
Sbjct 1018 AGAGTGATCATCCATAAGCCAATACACGGAAGCAAAGCGGATGATCTTTGCAACGAAGCG 1077
Query 1078 AGAAGCAAGATTGCAGAATCAATGGATCTCT-AAGCTGATCTCAGAAGTTGTC-TTTT-G 1134
|||||||||||||| ||||| |||||||||| ||||||||||| || |||| |||| |
Sbjct 1078 AGAAGCAAGATTGCGGAATCTATGGATCTCTTAAGCTGATCTCGGACCTTGTTGTTTTTG 1137
Query 1135 CTGCGTCTCTGATGAACATTGAGAAGCTTTAATTTTTACATGTGGAAGAATTAAAT--GT 1192
| |||||||||||||||| ||||||||| ||||||||||||||||||||||||||| ||
Sbjct 1138 CAGCGTCTCTGATGAACAATGAGAAGCTATAATTTTTACATGTGGAAGAATTAAATATGT 1197
Query 1193 TGAGA-TCTTTTTTAGTCAA 1211
||||| | ||||||||||||
Sbjct 1198 TGAGAAT-TTTTTTAGTCAA 1216
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48263612922
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5