BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G30590.1
Length=803
Score E
Sequences producing significant alignments: (Bits) Value
Ahg944929 jgi|Araly1|944929|scaffold_701158.1 800 0.0
> Ahg944929 jgi|Araly1|944929|scaffold_701158.1
Length=595
Score = 800 bits (433), Expect = 0.0
Identities = 546/596 (92%), Gaps = 25/596 (4%)
Strand=Plus/Plus
Query 76 aagtaaaaaatccaaaTTATGGGAATCATAGTTCCAGTTTTGACCCTTGTCTTCCTCTT- 134
||| ||||| |||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 4 AAG-AAAAAGTCCAAAAAATGGGAATCATAGTTCCAGTTTTGACCCTTGTCTTCCTCTTA 62
Query 135 GTTTGCTAAAGTGAGCCATGGTGCCTCCAATCCTAGGGTGATTCTAGTTGGTGGATCTGT 194
| || | |||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 63 G-TTACGAAAGTGAGCCATGGTGCCTCCAATCCTAGGGTGATTCTGGTCGGTGGATCTGT 121
Query 195 GGGATCATGGAAGGTTCCTGATTCTCCTAACAACACTCTCAATCACTGGGCCGAGAACAA 254
|||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 122 GGGATCGTGGAAGGTTCCTGATTCTCCCAACAACACTCTCAATCACTGGGCCGAGAACAA 181
Query 255 CCGTTTCAAAGTCGGCGACTTCATCGTGTGGAAGTACGACATGAAAGTAGATTCGGTACT 314
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 182 TCGTTTCAAAGTCGGCGACTTCATCGTGTGGAAGTACGACATGAAAGTAGATTCGGTACT 241
Query 315 ACAAGTGACAAAAGAAGATTACGAGAGC-TGTAACACAGCAAATCCCTTGAAGCAATACA 373
|||||||||||||||||||||||||| | ||||||||||||||||||||||||||||| |
Sbjct 242 ACAAGTGACAAAAGAAGATTACGAGA-CTTGTAACACAGCAAATCCCTTGAAGCAATATA 300
Query 374 ATGATGGAAACACTAAGGTTGCGCTTGACAAATCTGGCCCTTACTTCTTCATTAGTGGTG 433
|||||||| |||||||||||| ||||||||||||||||||||| ||||||||||||||||
Sbjct 301 ATGATGGAGACACTAAGGTTGAGCTTGACAAATCTGGCCCTTATTTCTTCATTAGTGGTG 360
Query 434 CTCCTGGTAACTGCGCTAAAGGCGAAAAGATTACCCTTGTTGTTTTGGCTGAACGCAAAT 493
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 CTCCTGGTAACTGCGCTAAAGGCGAAAAGATTACCCTTGTTGTTTTGGCTGAACGCAAAT 420
Query 494 CCGGTGGTGGCAGCAGCAGCGGTGACGCTCCTAAGGTTTCTCCTGTTAGTCCTACGGCTC 553
|||||||||| | || || | | ||| | ||||||||||| | | |||||||
Sbjct 421 CCGGTGGTGGT-G--GC-GC--T--C-CTC--A-GGTTTCTCCTG--A-T---ACGGCTC 462
Query 554 AAACTCCAGCTCCAGCTCCCGGTCCAGCTGCAGCCCATAACGCTGCGG-TGGGGTTGAAG 612
|||||||| |||||||||| | ||||| ||| || ||||||||||||| ||| ||||||
Sbjct 463 AAACTCCATCTCCAGCTCCAGCTCCAGGTGCCGCTCATAACGCTGCGGCTGGA-TTGAAG 521
Query 613 GTTGCAAGCGGTTGGTTCTTGACCGCAGTCGTGGTTGGTTTGGCTATGGCTTAGAG 668
|||| |||||||||||||||||||||||||||| |||||||||| |||||||||||
Sbjct 522 GTTGGAAGCGGTTGGTTCTTGACCGCAGTCGTGATTGGTTTGGCCATGGCTTAGAG 577
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29659629426
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5