BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G30610.1
Length=1702
Score E
Sequences producing significant alignments: (Bits) Value
Ahg491690 jgi|Araly1|491690|fgenesh2_kg.7__1123__AT4G30610.1 2479 0.0
Ahg320208 jgi|Araly1|320208|fgenesh1_pm.C_scaffold_4000265 558 4e-158
Ahg343953 jgi|Araly1|343953|fgenesh1_pg.C_scaffold_4000295 207 2e-52
> Ahg491690 jgi|Araly1|491690|fgenesh2_kg.7__1123__AT4G30610.1
Length=1589
Score = 2479 bits (1342), Expect = 0.0
Identities = 1509/1590 (95%), Gaps = 10/1590 (1%)
Strand=Plus/Plus
Query 53 GaaaaaaaaaGCGTGGAGAGTGTGTGAGAGGACACGAAATGGCAAGAACCCATTTCATTT 112
||| ||||||| || ||||||||||||||||||||||||||||||||| |||| ||||||
Sbjct 1 GAAGAAAAAAGTGTAGAGAGTGTGTGAGAGGACACGAAATGGCAAGAATCCATCTCATTT 60
Query 113 TCCTTCTTCTTGTAGCTCTTTTATCGACAACATTT-C--CATCATCATCATCTTCAAGAG 169
|||||||| |||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct 61 TCCTTCTTTTTGTAGCTCTTTTATCGACAACATTTCCATCATCATCATCATCTTCAAGAG 120
Query 170 AGCAAGAGAAGGACAGAATCAAAGCACTTCCAGGCCAACCAAAAGTGGCATTCTCACAAT 229
||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||
Sbjct 121 AGCAAGAGAAGGACAGAATCAAAACACTTCCAGGGCAACCAAAAGTGGCATTCTCACAAT 180
Query 230 ACTCAGGCTATGTCAATGTTAACCAGTCTCATGGTCGTGCCCTCTTCTATTGGCTTACTG 289
||||||||||||||||||||||| | |||||||||||||| ||||| |||||||||||||
Sbjct 181 ACTCAGGCTATGTCAATGTTAACGAATCTCATGGTCGTGCTCTCTTTTATTGGCTTACTG 240
Query 290 AGTCATCTTCTCCTTCTCCCCACACCAAGCCCCTTCTTCTTTGGCTCAATGGAGGACCGG 349
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 241 AGTCATCTTCTCCTTCTCCCCAAACCAAGCCCCTTCTTCTTTGGCTCAATGGAGGACCGG 300
Query 350 GCTGCTCGTCGATTGCTTATGGAGCTTCAGAGGAAATTGGACCGTTTCGTATCAACAAAA 409
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 GCTGCTCGTCGATTGCTTATGGAGCTTCAGAGGAAATTGGACCGTTTCGTATCAACAAAA 360
Query 410 CCGGTTCCAATCTCTATCTCAACAAGTTCGCTTGGAACAAAGACGCAAACCTTCTGTTTC 469
||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 361 CCGGTTCCAATCTCTATCTCAACAAGTTCTCTTGGAACAAAGACGCAAACCTTTTGTTTC 420
Query 470 TTGAATCACCGGCCGGAGTTGGATATTCCTACACGAACACAAGCTCCGATCTTAAAGACT 529
||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| || |
Sbjct 421 TTGAATCACCGGCGGGAGTTGGATATTCCTACACGAACACAAGTTCCGATCTTAAGGATT 480
Query 530 CCGGAGATGAACGAACAGCTCAAGACAACTTGATATTTCTTATCAAATGGTTATCGAGAT 589
||||||||| | |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 481 CCGGAGATGCGCAAACAGCTCAAGACAACTTGATATTTCTTATCAAATGGTTATCGAAAT 540
Query 590 TTCCTCAATACAAATACAGAGACTTCTATATCGCTGGTGAAAGCTATGCCGGGCATTATG 649
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 541 TTCCTCAATACAAATACAGAGACTTCTATATCGCTGGTGAAAGCTACGCCGGGCATTATG 600
Query 650 TTCCTCAGCTTGCCAAAAAGATAAATGACTACAACAAAGCTTTCTCCAAACCAATCATTA 709
|||||||||||||||||||||| |||||||||||||||||||||| ||||| |||||||
Sbjct 601 TTCCTCAGCTTGCCAAAAAGATCCATGACTACAACAAAGCTTTCTCTAAACCCATCATTA 660
Query 710 ATCTCAAAGGATTCTTGGTGGGAAATGCAGTGACGGACAATCAGTACGACAGTATAGGAA 769
|||||||||||||| |||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 661 ATCTCAAAGGATTCATGGTGGGAAACGCAGTGACGGACAATCAGTACGACAGTATAGGTA 720
Query 770 CAGTAACTTACTGGTGGACTCACGCAATTATCTCCGACAAAAGCTACAAGTCAATCCTCA 829
|||||||||||||||||||||||||||| |||||||||||| ||||||||| |||||||
Sbjct 721 CAGTAACTTACTGGTGGACTCACGCAATCGTCTCCGACAAAACCTACAAGTCCATCCTCA 780
Query 830 AATACTGCAATTTCACGGTGGAGAGAGTTTCCGACGATTGCGACAATGCGGTTAACTACG 889
|||| |||||||||||||||||||||||||| ||||||||||||| ||||||||||| |
Sbjct 781 AATATTGCAATTTCACGGTGGAGAGAGTTTCAGACGATTGCGACACCGCGGTTAACTATG 840
Query 890 CTATGAACCATGAGTTTGGTGACATTGATCAGTACAGCATTTACACCCCAACGTGCGTGG 949
|||||||||| ||||| ||||||||||||||||| |||||||||||||| ||||||||||
Sbjct 841 CTATGAACCACGAGTTCGGTGACATTGATCAGTATAGCATTTACACCCCGACGTGCGTGG 900
Query 950 CTGCTCAACAGAAGAAGAACACA-ACCGGTTTCTTTGTGCGGATGAAGAACACACTCTTG 1008
|||| || ||||||||||||| | |||||||||||||| || ||||||||||||||||||
Sbjct 901 CTGCACATCAGAAGAAGAACA-ATACCGGTTTCTTTGTACGAATGAAGAACACACTCTTG 959
Query 1009 CGTAGACGGTTAGTGTCTGGCTATGATCCTTGTACGGAGAGTTATGCAGAGAAGTATTTT 1068
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 960 CGTAGACGGTTAGTGTCTGGCTATGATCCTTGTACGGAGAGTTATGCAGAGAAGTATTTT 1019
Query 1069 AACCGTCCCGATGTTCAGAGAGCCATGCACGCTAATGTTACTGGAATTCGCTATAAATGG 1128
||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 1020 AACCGTCAGGATGTTCAGAGAGCTATGCACGCTAATGTTACTGGAATTCGCTATAAATGG 1079
Query 1129 ACAGCTTGCAGTGATGTTCTGATCAAGACCTGGAAAGATTCGGACAAGACCATGTTGCCC 1188
|||||||||||||||| ||||||||||| |||||||||||| |||||||| |||||||||
Sbjct 1080 ACAGCTTGCAGTGATGCTCTGATCAAGAACTGGAAAGATTCCGACAAGACGATGTTGCCC 1139
Query 1189 ATATACAAGGAACTTGCAGCGTCCGGTTTGAGGATCTGGATTTTCAGCGGTGATACAGAC 1248
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1140 ATATACAAGGAACTTGCAGCGTCTGGTTTGAGGATCTGGATTTTCAGCGGTGATACAGAT 1199
Query 1249 TCGGTGGTTCCAGTGACCGCGACACGGTTTTCCCTCAGCCATCTTAATCTCCCGGTGAAA 1308
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1200 TCGGTGGTTCCAGTGACCGCGACACGGTTTTCCCTCAGCCATCTCAATCTCCCGGTGAAA 1259
Query 1309 ACTCGTTGGTATCCTTGGTACACTGATAACCAGGTGGGAGGATGGACAGAGGTTTACAAG 1368
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1260 ACTCGTTGGTATCCTTGGTACTCTGATAACCAGGTGGGAGGATGGACAGAGGTTTACAAG 1319
Query 1369 GGACTGACCTTTGCAACGGTACGAGGGGCAGGCCACGAGGTGCCTTTATTTGAACCAAAG 1428
|| ||||||||||||||| || |||| |||||||| ||||||||||||||||||||||||
Sbjct 1320 GGCCTGACCTTTGCAACGATAAGAGGAGCAGGCCATGAGGTGCCTTTATTTGAACCAAAG 1379
Query 1429 CGTGCTCTCATTCTTTTCAGATCATTCTTGGCCGGGAAGGAACTCCCAAGATCTTATTAG 1488
||||||||||||||||||||||||||||||||||| || || ||||||||||||||||||
Sbjct 1380 CGTGCTCTCATTCTTTTCAGATCATTCTTGGCCGGAAAAGAGCTCCCAAGATCTTATTAG 1439
Query 1489 CTACTTTAATAACCTAAACATAGAGTAAGAGAAAATGTCCCG-AAGG-ACAATTTGGCTA 1546
||||||||||||||| ||||||||||||||||||||||||| || | ||||||||||||
Sbjct 1440 CTACTTTAATAACCTTAACATAGAGTAAGAGAAAATGTCCCCCAAAGCACAATTTGGCTA 1499
Query 1547 CCAGATTAGGAACCTATTCCGAGTAAACTCGGTATTCTTCTAC-tttttt-tt-CTGTTA 1603
|||||||||||||||||||||||||||||||| |||||||||| |||||| || ||||||
Sbjct 1500 CCAGATTAGGAACCTATTCCGAGTAAACTCGGAATTCTTCTACCTTTTTTCTTTCTGTTA 1559
Query 1604 AAAGCTCGATTCATTTCCACAATTTGGAAA 1633
||||||||||||||||||||||||||||||
Sbjct 1560 AAAGCTCGATTCATTTCCACAATTTGGAAA 1589
> Ahg320208 jgi|Araly1|320208|fgenesh1_pm.C_scaffold_4000265
Length=1425
Score = 558 bits (302), Expect = 4e-158
Identities = 904/1185 (76%), Gaps = 79/1185 (7%)
Strand=Plus/Plus
Query 344 GACCGGGCTGCTCGTCGATTGCTTATGGAGCTTCAGAGGAAATTGGACCGTTTCGTATCA 403
|||| |||||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 278 GACCAGGCTGCTCGTCGATTGCTTATGGAGCTTCAGAGGAAATTGGACCATTTCGGATCA 337
Query 404 ACAAAACCGGTTCCAATCTCTATCTCAACAAGTTCGCTTGGAACAAAGACGCAAACCTTC 463
||||||||||| |||||| ||||||||||| || ||||||||| ||| |||||||||
Sbjct 338 GCAAAACCGGTTACAATCTTTATCTCAACAACTTTTCTTGGAACACAGAGGCAAACCTTT 397
Query 464 TGTTTCTTGAATCACCGGCCGGAGTTGGATATTCCTACACGAACACAAGCTCCGATCTTA 523
| ||||| ||||| || | || ||||||| ||| ||||| ||||||||||||||| ||
Sbjct 398 TATTTCTGGAATCGCCTGTTGGTGTTGGATTTTCATACACTAACACAAGCTCCGAT-TTC 456
Query 524 A-AGACTCCGGAGATGAACGAACAGCTCAAGACAACTTGATATTTCTTATCAAAT-GGTT 581
||| |||||||| ||||| |||||||| || || ||||||||||||| ||| | || |
Sbjct 457 GTAGAATCCGGAGACGAACGTACAGCTCAGGATAATTTGATATTTCTTA-CAAGTTGGAT 515
Query 582 ATCGAGATTTCCTCAATACAAATACAGAGACTTCTATATCGCTGGTGAAAGCTATGCCGG 641
|| ||||||||||| ||| |||| ||||| ||||| || | |||||||||||| |||||
Sbjct 516 GTCAAGATTTCCTCAGTACCAATATAGAGATTTCTACATTGTTGGTGAAAGCTACGCCGG 575
Query 642 GCATTATGTTCCTCAGCTTGCCAAAAAGATAAATGACTACAACAAAGCTTTCTCCAAA-C 700
|||||||||||||||||| |||||||| || |||| |||||||| | || | ||| |
Sbjct 576 GCATTATGTTCCTCAGCTCGCCAAAAAAATTTATGAGTACAACAAGGATTGCAA-AAATC 634
Query 701 CAATCATTAATCTCAAAGGATTCTTGGTGGGAAATGCAGTGACGGACAATCAGTA-CGAC 759
|| | || || |||||||| ||| |||| || || ||| || |||||| | | ||||
Sbjct 635 CAGTAATCAACCTCAAAGGTTTCATGGTTGGTAACCCAGAGATGGACAAA-ACCAACGAC 693
Query 760 AGTA-TAGGAAC-AGTAACTTACTGGTGGACTCACGCAATTATCTCCGACAAAAGCTACA 817
| | |||| || | |||| || |||||| ||||||| || ||||| ||| |||||
Sbjct 694 AA-ACTAGGGACCA-TAACGTATTGGTGGTCTCACGCTATGATCTCAGACGCTTCCTACA 751
Query 818 AGT-CAATCCTC-AAATACTGCAATTTCACGGTGGAGAGAGTT-TCCGAC-GATTGCGAC 873
| | || ||||| ||| ||||| |||||| | ||||| | || || || || || |
Sbjct 752 ATTGCA-TCCTCGAAA-ACTGCGATTTCAAAGCGGAGAAA-TTCTC-GAAAGAATGT-A- 805
Query 874 AATGCGGT-TA-ACT-ACGCTATGAA-CCATGAGTTTGGTGACATTGATCAGTACAGCAT 929
| | || || | | ||||| | | || || ||||| ||||| ||||||||||||||
Sbjct 806 ATTCCGCCATATA-TGACGCT--GCAGCC--GACTTTGGCGACATCGATCAGTACAGCAT 860
Query 930 TTACACCCC-AACGTGCGTGGCTGCTCAACAGAAGAA-GAACACA-ACCG-GTTTCTTTG 985
||||| || || ||| || | | ||| | | || |||| || ||| |||| |
Sbjct 861 CTACACACCTAA-GTGTGTACCACCACAAGACCA-AACGAAC-CAGACCAAGTTT----G 913
Query 986 TGCGGATGAAG-AACA--CACTCTTGCGTAGACGGTTAGT-GTCTGG-CTAT--GATCCT 1038
||| ||||| | || | || | | || || ||| | || | | || || |||
Sbjct 914 TGCAGATGATGCAA-ATGCAAACAA-C-TAAACCGTTTTTAGTA-GATCAATACGACCCT 969
Query 1039 TGTACGGAGAGTTATGCAGAGA-AGTATTTTAACCGTCCCGATGTTCAGA-GAGCCATGC 1096
||||| || | ||||| |||| | |||| ||||||||| || || || | |||| ||||
Sbjct 970 TGTACCGAAAACTATGCCGAGATA-TATTATAACCGTCCTGAGGTACA-ACGAGCTATGC 1027
Query 1097 ACGCTAATGTTACTGGAATTCGC-TATAAATGGACAGCTTGCAGTGA-T--GT-TCTGAT 1151
||||||| |||| |||| | ||||| ||||| ||||||||||| | || | ||||
Sbjct 1028 ACGCTAACCACACTGCCATTC-CATATAAGTGGACCGCTTGCAGTGACTCTGTGTTTGAT 1086
Query 1152 CAA--G-ACCTGGAAAGATTCGGACAAGACCATGTTGCCCATATACAAGGAACT--T-GC 1205
|| | | |||| |||||| ||||| | |||||||| |||||||||||||| | ||
Sbjct 1087 -AACTGGAATTGGAGAGATTCCGACAATTCAATGTTGCCGATATACAAGGAACTCATTGC 1145
Query 1206 AGCGTCCGGTTTGAGGATCTGGATTT-TCAGCGGTGATACAGACTCGGTGGTTCCAGTGA 1264
|| | ||| | || || ||| | | | || ||||||||||| |||||| |||||||||
Sbjct 1146 TGC-T--GGTATAAGAATATGGGTCTAT-AGTGGTGATACAGATTCGGTGATTCCAGTGA 1201
Query 1265 CCGCGACACGGTTTTCCCTCAGCCATCTTAATCTCCCGGTGAAAACTCGTTGGTATCCTT 1324
| ||||| |||||||| |||||| | || ||||| | || |||||||| ||||| ||||
Sbjct 1202 CAGCGACTCGGTTTTCTCTCAGCAAACTCAATCTTACAGTTAAAACTCGCTGGTACCCTT 1261
Query 1325 GGTACACTGATAACCAGGTGGGAGGATGGACAGAGGTTTACAAGGGACTGACCTTTGCAA 1384
||||| | | |||||||| |||||| | ||||| || ||| |||| || ||||||| |
Sbjct 1262 GGTACTCCGGGAACCAGGTAGGAGGACGAACAGAAGTATACGAGGGGCTTACCTTTGTGA 1321
Query 1385 CGGTACGAGGGGCAGGCCACGAGGTGCCTTTATTTGAACC--AAAGCGTGCTCTCATTCT 1442
||||| ||||||| |||||||||||||| || || |||| |||| ||| || |||||
Sbjct 1322 CGGTAAGAGGGGCGGGCCACGAGGTGCCATTCTTCCAACCGCAAAG--TGCGCTAATTCT 1379
Query 1443 TTTCAGATCATTCTTGGCCGGGAAGGAACTCCCAAGATCTTATTA 1487
||| ||||| |||||||| || || || || ||||||| ||||||
Sbjct 1380 TTTAAGATCGTTCTTGGCTGGAAAAGAGCTTCCAAGATATTATTA 1424
> Ahg343953 jgi|Araly1|343953|fgenesh1_pg.C_scaffold_4000295
Length=669
Score = 207 bits (112), Expect = 2e-52
Identities = 219/269 (81%), Gaps = 13/269 (5%)
Strand=Plus/Plus
Query 586 AGATTTCCTCAATACAAATACAGAGACTTCTATATCGCTGGTGAAAGCTATGCCGGGCAT 645
|||||||||| ||| |||| ||||| ||||| || |||||||||||||| || || |||
Sbjct 7 AGATTTCCTCTGTACCAATATAGAGATTTCTACATTGCTGGTGAAAGCTACGCTGGTCAT 66
Query 646 TATGTTCCTCAGCTTGCCAAAAAGATAAATGACTACAACAAAGCTTTCTCCAA-AC-CA- 702
|||||||||||||||||||||||||| || ||||||||||||||| ||| || |
Sbjct 67 TATGTTCCTCAGCTTGCCAAAAAGATCCATCTCTACAACAAAGCTTTAAACAACACACCC 126
Query 703 ATCATTAATCTCAAAGGATTCTTGGTGGGAAATGCAG-TGACGGACAATCAGTACGACAG 761
|||||||| |||||||||||| |||| ||||||| || | | |||||| || ||||||||
Sbjct 127 ATCATTAACCTCAAAGGATTCATGGTCGGAAATGGAGAT-ATGGACAAGCATTACGACAG 185
Query 762 TAT-AGGAACAGTAACT-TACTG-GTGGACTCACGCAATTATCTCCGACAAAAGCT-ACA 817
|| |||||| | | | || || |||| | |||||||| ||||| |||||| || |||
Sbjct 186 -ATTAGGAACCGCCA-TGTA-TGCGTGGTCACACGCAATGATCTCTGACAAAT-CTTACA 241
Query 818 AGTCAATCCTCAAATACTGCAATTTCACG 846
|||| ||||||||| |||||| ||||||
Sbjct 242 AGTCTATCCTCAAACACTGCAGCTTCACG 270
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 63839250620
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5