BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G30620.1
Length=718
Score E
Sequences producing significant alignments: (Bits) Value
Ahg944926 jgi|Araly1|944926|scaffold_701155.1 845 0.0
Ahg899725 jgi|Araly1|899725|Al_scaffold_0004_375 433 1e-120
Ahg335341 jgi|Araly1|335341|fgenesh1_pg.C_scaffold_1001906 353 8e-97
> Ahg944926 jgi|Araly1|944926|scaffold_701155.1
Length=591
Score = 845 bits (457), Expect = 0.0
Identities = 540/578 (93%), Gaps = 13/578 (2%)
Strand=Plus/Plus
Query 29 AGGAGAACAATGGCTTCGACGGCTACGAAC-ACTGATTTCTTCAAGACTTTGCTTTCTCC 87
||||||| |||||||||||||||| || || ||||||||||||||| |||||||||||||
Sbjct 15 AGGAGAAGAATGGCTTCGACGGCTTCG-ACTACTGATTTCTTCAAGCCTTTGCTTTCTCC 73
Query 88 TTTCTCAAATGGGAATGCGGCGCAACGAAGT-AGTAGACAGAACATTGTTTGGTTAAATC 146
|||||| |||||||||||||||||||||| | |||||||||||| | || ||||||||||
Sbjct 74 TTTCTCCAATGGGAATGCGGCGCAACGAA-TCAGTAGACAGAACGTGGTATGGTTAAATC 132
Query 147 GGAAGCAA-TCTGGAAATAAT--AA--CAGATCTCTTCGTGTTAATGGATTATTCGGAGG 201
| ||| || |||||||||||| || | |||||||||||||||||||||||||||||||
Sbjct 133 GAAAG-AATTCTGGAAATAATCAAAGTC-GATCTCTTCGTGTTAATGGATTATTCGGAGG 190
Query 202 CGGAAAAAAGGACAATAAAGAGGATGGACAATCAAAGGCAGGAATTCTAGGTAACATGCA 261
|||||||||||||| |||||||||||||||||||||||||| || || |||||||||||
Sbjct 191 TGGAAAAAAGGACAACAAAGAGGATGGACAATCAAAGGCAGGTATACTTGGTAACATGCA 250
Query 262 GAATTTGTATGAGACAGTGAAGAAAGCTCAAATGGTTGTTCAAGTAGAGGCTGTTAGAGT 321
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 251 GAATTTGTATGAGACTGTGAAGAAAGCTCAAATGGTTGTTCAAGTAGAGGCTGTTAGAGT 310
Query 322 GCAGAAGGAGCTTGCTGTTGCTGAATTTGATGGTTATTGTCAAGGCGAGCTTGTCAAGGT 381
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 311 GCAGAAGGAGCTTGCTGTTGCTGAATTTGATGGTTATTGTGAAGGCGAGCTTGTCAAGGT 370
Query 382 TACATTATCAGGTAACCAGCAACCAATTCGCACTGATATCACTGATGCAGCAATGGAGTT 441
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 371 TACATTATCAGGTAACCAGCAACCAATTCGCACTGATATCACTGATGCAGCAATGGAATT 430
Query 442 AGGTTCTGAAAAACTTTCACTGCTGGTCACAGAAGCATACAAAGACGCACATTC-AAAGA 500
||| || |||||||||||||| |||||||||||||||||||| || || ||| | ||| |
Sbjct 431 AGGCTCCGAAAAACTTTCACTACTGGTCACAGAAGCATACAAGGAAGCTCATGCTAAA-A 489
Query 501 GTGTACTGGCTATGAAAGAAAGAATGAGTGATCTTGCGCAGAGCTTAGGGATGCCACCAG 560
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 490 GTGTACTGGCTATGAAAGAAAGAATGAGTGATCTTGCGCAGAGCTTAGGGATGCCACCGG 549
Query 561 GCCTTGATGGATTAAAGTAACAAAACTTAATCTTTTTT 598
|||||||||||||||||||||||||| |||||||||||
Sbjct 550 GCCTTGATGGATTAAAGTAACAAAACCTAATCTTTTTT 587
> Ahg899725 jgi|Araly1|899725|Al_scaffold_0004_375
Length=549
Score = 433 bits (234), Expect = 1e-120
Identities = 343/394 (87%), Gaps = 13/394 (3%)
Strand=Plus/Plus
Query 173 TCTCTTCGTGTTAATGGATTATTCGGAGGCGGAAA-AAAGGACAATAA-A--GAGGATGG 228
||||||||||| |||||||||||||| || ||||| ||| || ||||| | || |||||
Sbjct 136 TCTCTTCGTGTCAATGGATTATTCGGTGGTGGAAACAAA-GATAATAACAGTGAAGATGG 194
Query 229 ACAATCAAAGGCA-GGA-ATTCTAGGTAACATGCAGAATTTGTATGAGACAGTGAAGAAA 286
||||||||||||| ||| ||| | ||||| ||||||||| |||||||||| |||||||||
Sbjct 195 ACAATCAAAGGCAGGGATATT-T-GGTAATATGCAGAATATGTATGAGACTGTGAAGAAA 252
Query 287 GCTCAAATGGTTGTTCAAGTAGAGGCTGTTA-GAGTGCAGAAGGAGCTT-GCTGTTGCTG 344
|||||||||||||||||||| || ||||| | | || || || ||| || |||| || |
Sbjct 253 GCTCAAATGGTTGTTCAAGTCGAAGCTGT-ACGTGTCCAAAAAGAG-TTAGCTGCCGCAG 310
Query 345 AATTTGATGGTTATTGTCAAGGCGAGCTTGTCAAGGTTACATTATCAGGTAACCAGCAAC 404
||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||
Sbjct 311 AATTTGATGGTTATTGTGAAGGCGAGCTTGTCAAGGTTACGTTATCAGGTAACCAGCAAC 370
Query 405 CAATTCGCACTGATATCACTGATGCAGCAATGGAGTTAGGTTCTGAAAAACTTTCACTGC 464
|||| || |||||||| || || ||||||||||| ||||||||||||||||| |||| |
Sbjct 371 CAATCCGTACTGATATAACCGAGGCAGCAATGGAATTAGGTTCTGAAAAACTGTCACAAC 430
Query 465 TGGTCACAGAAGCATACAAAGACGCACATTCAAAGAGTGTACTGGCTATGAAAGAAAGAA 524
| ||||||||||||||||| |||||||| | |||||||| ||||||||||||| ||||
Sbjct 431 TTGTCACAGAAGCATACAAGGACGCACACGCGAAGAGTGTGGTGGCTATGAAAGAGAGAA 490
Query 525 TGAGTGATCTTGCGCAGAGCTTAGGGATGCCACC 558
||||||| ||||||||||||||||| ||||||||
Sbjct 491 TGAGTGACCTTGCGCAGAGCTTAGGCATGCCACC 524
> Ahg335341 jgi|Araly1|335341|fgenesh1_pg.C_scaffold_1001906
Length=447
Score = 353 bits (191), Expect = 8e-97
Identities = 210/219 (96%), Gaps = 1/219 (0%)
Strand=Plus/Plus
Query 235 AAAGGCAGGAATTCTAGGTAACATGCAGAATTTGTATGAGACAGTGAAGAAAGCTCAAAT 294
||| ||||| || || |||||||||||||||||||||||||| |||||||||||||||||
Sbjct 109 AAA-GCAGGTATACTTGGTAACATGCAGAATTTGTATGAGACTGTGAAGAAAGCTCAAAT 167
Query 295 GGTTGTTCAAGTAGAGGCTGTTAGAGTGCAGAAGGAGCTTGCTGTTGCTGAATTTGATGG 354
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 168 GGTTGTTCAAGTAGAGGCTGTTAGAGTGCAGAAGGAGCTTGCTGTTGCTGAATTTGATGG 227
Query 355 TTATTGTCAAGGCGAGCTTGTCAAGGTTACATTATCAGGTAACCAGCAACCAATTCGCAC 414
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 228 TTATTGTGAAGGCGAGCTTGTCAAGGTTACATTATCAGGTAACCAGCAACCAATTCGCAC 287
Query 415 TGATATCACTGATGCAGCAATGGAGTTAGGTTCTGAAAA 453
|||||||||||||||||||||||| ||||| || |||||
Sbjct 288 TGATATCACTGATGCAGCAATGGAATTAGGCTCCGAAAA 326
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 26419181481
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5