BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: halleri_transcript_ahg.fa
32,672 sequences; 38,939,717 total letters
Query= AT4G30630.1
Length=1341
Score E
Sequences producing significant alignments: (Bits) Value
Ahg944925 jgi|Araly1|944925|scaffold_701154.1 1133 0.0
> Ahg944925 jgi|Araly1|944925|scaffold_701154.1
Length=754
Score = 1133 bits (613), Expect = 0.0
Identities = 712/759 (94%), Gaps = 10/759 (1%)
Strand=Plus/Plus
Query 391 AAATTCACTGAACGGATCCGATGAAGAAGACTAATTTCGTTTCCTCTGCTTCCGGTGGCG 450
||||||||||| |||||||||||||| ||||||||||||| ||||||||||| ||||||
Sbjct 1 AAATTCACTGAGCGGATCCGATGAAGGAGACTAATTTCGTCTCCTCTGCTTCTTGTGGCG 60
Query 451 ATCCCATGATCAGATT-AACCTT-TG-TGCAGGTTCTGGAGTTGGAAAAGGAATTAG-AG 506
|||||||||||||||| | |||| || ||||||||||||||||||||||||||||| ||
Sbjct 61 ATCCCATGATCAGATTCACCCTTATGCAGCAGGTTCTGGAGTTGGAAAAGGAATTAGAAG 120
Query 507 ATAAAGAGAAAGAGATTGGAGATGATTAAACAAAAGAGATTGACCCTCAAGTCAGAAGTT 566
|||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 121 -TAAAGAGAAAGAAATTGGAGATGATTAAACAAAAAAGATTGACCCTCAAGTCAGAAGTT 179
Query 567 AGGTTCTTGAGACGTAGATACGAGCACTTGAAGCAAGATCAAACTCTTGAAACCTCTCCA 626
|||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 180 AGGTTCTTGAGACGTAGATACGAGCACTTGAAGCAAGACCAAACTCTTGAAACATCTCCA 239
Query 627 GAGATGTTGAGATTGTCAGAATCCGGGGGTTTAGAGGTCCCAAGGAAACCAAGTGGCGAA 686
| |||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||
Sbjct 240 AATATGTTGAGATTGTCAGAATCTGGGGGTTCAGAGGTCCCAAGGAAACCAAGTGGCGAA 299
Query 687 AGAAAGAAGCAGTCTGGTGTGAGAGCATCTGTACCATGTTTTGATTTGAAACTGAAGAAT 746
|| |||||||| |||||||||||||||||||| ||||||| ||||||||||| |||||||
Sbjct 300 AGGAAGAAGCACTCTGGTGTGAGAGCATCTGTGCCATGTTCTGATTTGAAACAGAAGAAT 359
Query 747 ACAATTTGCAATGAGAAGGAAGCATTGGCTAATAATGTTGCAAGTTGTGACTTGGATAAG 806
||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||
Sbjct 360 ACAATTTGCAATGAGAAGGAAGCATTGGCTAATAATG---CAAGTTGTGACTTGGAAAAG 416
Query 807 AAGCGAAAAAGGAGCAGAGGAAGCGATGTTTTGACA-TTCCCCGTTTCACTTCCTGACCT 865
||||||| |||||||||||||| ||| ||||||||| ||||| |||||||||||||||||
Sbjct 417 AAGCGAAGAAGGAGCAGAGGAAACGAGGTTTTGACAATTCCC-GTTTCACTTCCTGACCT 475
Query 866 TAACGGAGAGGGAAACACTTCTGGCACTGACAAAGTCCCTGGCTTTGACCTAAACCAGAT 925
||||||||||||||||||||||| ||| ||||||||||| ||||||||||||||||||||
Sbjct 476 TAACGGAGAGGGAAACACTTCTGTCACCGACAAAGTCCCAGGCTTTGACCTAAACCAGAT 535
Query 926 CTCGAGAGAAGAAGAGGAGCCGGAAGTGAATGGTGAACATATGGTCGCGGAAGCAATGAA 985
|||||||||||||||||| |||| ||||||||||||||||||||||| ||||||||||||
Sbjct 536 CTCGAGAGAAGAAGAGGAACCGGCAGTGAATGGTGAACATATGGTCGTGGAAGCAATGAA 595
Query 986 GAATGCAATGCTTGATAACAGGATCAGTGATCTACATGTTGAAAGAAAGTTACCCATTTG 1045
||||||||||| ||||||||| |||||||||||||||| |||||||||||||| |||||
Sbjct 596 GAATGCAATGCGTGATAACAGAATCAGTGATCTACATGGCGAAAGAAAGTTACCAATTTG 655
Query 1046 CGGAGATGTGGAGAAAGAGTTAAATAGAGCAGTGAAGAGGAAGGTTACATGGCAAGATCC 1105
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 656 CGGAGATGTGGAGAAAGAGTTAAACAGAGCAGTGAAGAGGAAGGTTACATGGCAAGATCC 715
Query 1106 AGTGGCTTTAAGTGTTTAGGGTGTTTAGTATGAAATAGG 1144
|||||||||||||||||||||| ||||||||||||||||
Sbjct 716 AGTGGCTTTAAGTGTTTAGGGTTTTTAGTATGAAATAGG 754
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50169758772
Database: halleri_transcript_ahg.fa
Posted date: Sep 25, 2014 2:02 AM
Number of letters in database: 38,939,717
Number of sequences in database: 32,672
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5